RNA–Protein interactions for RNA: ENST00000542841.1

SRGAP1-205, Transcript of SLIT-ROBO Rho GTPase activating protein 1, humanhuman

TSL 2

Gene SRGAP1, Length 836 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP1-205ENST00000542841 HRCP23327 699 aa17.07■□□□□ 0.32
SRGAP1-205ENST00000542841 HFM1A2PYH4 1435 aa17.06■□□□□ 0.32
SRGAP1-205ENST00000542841 CLTCL1P53675 1640 aa17.06■□□□□ 0.32
SRGAP1-205ENST00000542841 EP400Q96L91 3159 aa17.05■□□□□ 0.32
SRGAP1-205ENST00000542841 COL22A1Q8NFW1 1626 aaPredicted RBP17.04■□□□□ 0.32
SRGAP1-205ENST00000542841 NPHP3Q7Z494 1330 aa17.04■□□□□ 0.32
SRGAP1-205ENST00000542841 ACIN1Q9UKV3 1341 aaKnown RBP17.04■□□□□ 0.32
SRGAP1-205ENST00000542841 PRAG1Q86YV5 1406 aa17.03■□□□□ 0.32
SRGAP1-205ENST00000542841 MYOM2P54296 1465 aa17.02■□□□□ 0.32
SRGAP1-205ENST00000542841 BCL9LQ86UU0 1499 aa17.02■□□□□ 0.32
SRGAP1-205ENST00000542841 ESCO1Q5FWF5 840 aa17.02■□□□□ 0.32
SRGAP1-205ENST00000542841 KIF1BO60333 1816 aa17.02■□□□□ 0.31
SRGAP1-205ENST00000542841 GJD4Q96KN9 370 aaPredicted RBP17.01■□□□□ 0.31
SRGAP1-205ENST00000542841 RPGRIP1LQ68CZ1 1315 aa17■□□□□ 0.31
SRGAP1-205ENST00000542841 LRPPRCP42704 1394 aaKnown RBP16.99■□□□□ 0.31
SRGAP1-205ENST00000542841 RAB3GAP2Q9H2M9 1393 aa16.99■□□□□ 0.31
SRGAP1-205ENST00000542841 NAIPQ13075 1403 aa16.98■□□□□ 0.31
SRGAP1-205ENST00000542841 FOXO3O43524 673 aa16.98■□□□□ 0.31
SRGAP1-205ENST00000542841 PXDNQ92626 1479 aa16.98■□□□□ 0.31
SRGAP1-205ENST00000542841 ZEB1P37275 1124 aaPredicted RBP16.97■□□□□ 0.31
SRGAP1-205ENST00000542841 XPCQ01831 940 aaPredicted RBP16.97■□□□□ 0.31
SRGAP1-205ENST00000542841 CDC42BPGQ6DT37 1551 aa16.96■□□□□ 0.31
SRGAP1-205ENST00000542841 BLMP54132 1417 aaPredicted RBP16.96■□□□□ 0.3
SRGAP1-205ENST00000542841 UNC5CLQ8IV45 518 aa16.95■□□□□ 0.3
SRGAP1-205ENST00000542841 MARF1Q9Y4F3 1742 aaKnown RBP16.95■□□□□ 0.3
SRGAP1-205ENST00000542841 CLSPNQ9HAW4 1339 aa16.95■□□□□ 0.3
SRGAP1-205ENST00000542841 SF3B2Q13435 895 aaKnown RBP16.93■□□□□ 0.3
SRGAP1-205ENST00000542841 RALGAPBQ86X10 1494 aa16.93■□□□□ 0.3
SRGAP1-205ENST00000542841 NUTM2FA1L443 756 aa16.92■□□□□ 0.3
SRGAP1-205ENST00000542841 CCER1Q8TC90 406 aaPredicted RBP16.92■□□□□ 0.3
SRGAP1-205ENST00000542841 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.92■□□□□ 0.3
SRGAP1-205ENST00000542841 SLIT2O94813 1529 aa16.91■□□□□ 0.3
SRGAP1-205ENST00000542841 PPLO60437 1756 aa16.9■□□□□ 0.3
SRGAP1-205ENST00000542841 DEFB132Q7Z7B7 95 aa16.9■□□□□ 0.3
SRGAP1-205ENST00000542841 SPATA31A3Q5VYP0 1347 aa16.9■□□□□ 0.3
SRGAP1-205ENST00000542841 DHX57Q6P158 1386 aaKnown RBP16.89■□□□□ 0.3
SRGAP1-205ENST00000542841 GLI3P10071 1580 aa16.89■□□□□ 0.3
SRGAP1-205ENST00000542841 WAPLQ7Z5K2 1190 aa16.89■□□□□ 0.29
SRGAP1-205ENST00000542841 SLC4A1APQ9BWU0 796 aaKnown RBP16.89■□□□□ 0.29
SRGAP1-205ENST00000542841 STK26Q9P289 416 aa16.89■□□□□ 0.29
SRGAP1-205ENST00000542841 HAP1P54257 671 aaPredicted RBP16.88■□□□□ 0.29
SRGAP1-205ENST00000542841 SEPT12Q8IYM1 358 aa16.88■□□□□ 0.29
SRGAP1-205ENST00000542841 CCDC144AA2RUR9 1427 aa16.87■□□□□ 0.29
SRGAP1-205ENST00000542841 TECPR2O15040 1411 aa16.87■□□□□ 0.29
SRGAP1-205ENST00000542841 VPS72Q15906 364 aa16.86■□□□□ 0.29
SRGAP1-205ENST00000542841 KRT28Q7Z3Y7 464 aa16.86■□□□□ 0.29
SRGAP1-205ENST00000542841 USP32Q8NFA0 1604 aa16.85■□□□□ 0.29
SRGAP1-205ENST00000542841 ADGRF5Q8IZF2 1346 aa16.85■□□□□ 0.29
SRGAP1-205ENST00000542841 ABCC11Q96J66 1382 aa16.85■□□□□ 0.29
SRGAP1-205ENST00000542841 PSME1Q06323 249 aa16.84■□□□□ 0.29
SRGAP1-205ENST00000542841 KRT27Q7Z3Y8 459 aa16.84■□□□□ 0.29
SRGAP1-205ENST00000542841 CCDC9Q9Y3X0 531 aaKnown RBP16.84■□□□□ 0.29
SRGAP1-205ENST00000542841 KIF1AQ12756 1690 aa16.84■□□□□ 0.29
SRGAP1-205ENST00000542841 ONECUT3O60422 494 aaPredicted RBP16.83■□□□□ 0.28
SRGAP1-205ENST00000542841 BRWD3Q6RI45 1802 aa16.83■□□□□ 0.28
SRGAP1-205ENST00000542841 PLEKHH1Q9ULM0 1364 aa16.83■□□□□ 0.28
SRGAP1-205ENST00000542841 LRP5O75197 1615 aa16.82■□□□□ 0.28
SRGAP1-205ENST00000542841 ANKRD30BQ9BXX2 1392 aa16.82■□□□□ 0.28
SRGAP1-205ENST00000542841 RGL3Q3MIN7 710 aa16.82■□□□□ 0.28
SRGAP1-205ENST00000542841 TMEM132EQ6IEE7 984 aa16.82■□□□□ 0.28
SRGAP1-205ENST00000542841 TNS3Q68CZ2 1445 aa16.81■□□□□ 0.28
SRGAP1-205ENST00000542841 CABLES1Q8TDN4 633 aa16.81■□□□□ 0.28
SRGAP1-205ENST00000542841 FMN2Q9NZ56 1722 aa16.81■□□□□ 0.28
SRGAP1-205ENST00000542841 PLEKHG5O94827 1062 aa16.8■□□□□ 0.28
SRGAP1-205ENST00000542841 BAG6P46379 1132 aa16.8■□□□□ 0.28
SRGAP1-205ENST00000542841 PHF8Q9UPP1 1060 aa16.8■□□□□ 0.28
SRGAP1-205ENST00000542841 KNDC1Q76NI1 1749 aa16.79■□□□□ 0.28
SRGAP1-205ENST00000542841 A0A0G2JS52 829 aa16.79■□□□□ 0.28
SRGAP1-205ENST00000542841 MYT1Q01538 1121 aa16.79■□□□□ 0.28
SRGAP1-205ENST00000542841 LMOD2Q6P5Q4 547 aa16.79■□□□□ 0.28
SRGAP1-205ENST00000542841 PSDA5PKW4 1024 aaPredicted RBP16.78■□□□□ 0.28
SRGAP1-205ENST00000542841 NWD2Q9ULI1 1742 aa16.78■□□□□ 0.28
SRGAP1-205ENST00000542841 YTHDC2Q9H6S0 1430 aaKnown RBP16.78■□□□□ 0.28
SRGAP1-205ENST00000542841 SBNO1A3KN83 1393 aa16.77■□□□□ 0.28
SRGAP1-205ENST00000542841 ARHGEF10O15013 1369 aa16.77■□□□□ 0.28
SRGAP1-205ENST00000542841 SIRT1Q96EB6 747 aa16.77■□□□□ 0.28
SRGAP1-205ENST00000542841 PLCH1Q4KWH8 1693 aa16.77■□□□□ 0.28
SRGAP1-205ENST00000542841 PIK3C2GO75747 1445 aa16.77■□□□□ 0.27
SRGAP1-205ENST00000542841 FAM83GA6ND36 823 aa16.76■□□□□ 0.27
SRGAP1-205ENST00000542841 SPATA31E1Q6ZUB1 1445 aa16.76■□□□□ 0.27
SRGAP1-205ENST00000542841 NRXN1Q9ULB1 1477 aa16.74■□□□□ 0.27
SRGAP1-205ENST00000542841 FAM98CQ17RN3 349 aaKnown RBP16.74■□□□□ 0.27
SRGAP1-205ENST00000542841 IFT172Q9UG01 1749 aa16.73■□□□□ 0.27
SRGAP1-205ENST00000542841 BTG4Q9NY30 223 aa16.72■□□□□ 0.27
SRGAP1-205ENST00000542841 RGPD8O14715 1765 aaPredicted RBP16.72■□□□□ 0.27
SRGAP1-205ENST00000542841 ABCA3Q99758 1704 aa16.71■□□□□ 0.27
SRGAP1-205ENST00000542841 EN1Q05925 392 aaPredicted RBP16.71■□□□□ 0.27
SRGAP1-205ENST00000542841 SAFB2Q14151 953 aaKnown RBP eCLIP16.7■□□□□ 0.26
SRGAP1-205ENST00000542841 PMFBP1Q8TBY8 1022 aa16.7■□□□□ 0.26
SRGAP1-205ENST00000542841 C14orf93Q9H972 538 aaKnown RBP16.7■□□□□ 0.26
SRGAP1-205ENST00000542841 PRAM1Q96QH2 718 aa16.69■□□□□ 0.26
SRGAP1-205ENST00000542841 R3HDM1Q15032 1099 aaKnown RBP16.68■□□□□ 0.26
SRGAP1-205ENST00000542841 MPHOSPH9Q99550 1183 aa16.68■□□□□ 0.26
SRGAP1-205ENST00000542841 ANKARQ7Z5J8 1434 aa16.68■□□□□ 0.26
SRGAP1-205ENST00000542841 CFAP70Q5T0N1 1121 aa16.67■□□□□ 0.26
SRGAP1-205ENST00000542841 FAM182BQ5T319 152 aa16.67■□□□□ 0.26
SRGAP1-205ENST00000542841 POGKQ9P215 609 aa16.67■□□□□ 0.26
SRGAP1-205ENST00000542841 RGPD1P0DJD0 1748 aa16.67■□□□□ 0.26
SRGAP1-205ENST00000542841 NRAPQ86VF7 1730 aa16.67■□□□□ 0.26
SRGAP1-205ENST00000542841 GPRASP1Q5JY77 1395 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms