RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 RPGRIP1LQ68CZ1 1315 aa10.62□□□□□ -0.71
PDLIM5-221ENST00000542407 CFAP70Q5T0N1 1121 aa10.62□□□□□ -0.71
PDLIM5-221ENST00000542407 POLR3GLQ9BT43 218 aa10.62□□□□□ -0.71
PDLIM5-221ENST00000542407 SPATA31D1Q6ZQQ2 1576 aa10.61□□□□□ -0.71
PDLIM5-221ENST00000542407 CFAP44Q96MT7 982 aa10.61□□□□□ -0.71
PDLIM5-221ENST00000542407 PER1O15534 1290 aaPredicted RBP10.6□□□□□ -0.71
PDLIM5-221ENST00000542407 ZBTB47Q9UFB7 747 aaPredicted RBP10.6□□□□□ -0.71
PDLIM5-221ENST00000542407 ZFYVE9O95405 1425 aa10.6□□□□□ -0.71
PDLIM5-221ENST00000542407 EIF3AQ14152 1382 aaKnown RBP10.59□□□□□ -0.71
PDLIM5-221ENST00000542407 ANP32AP39687 249 aaKnown RBP10.59□□□□□ -0.71
PDLIM5-221ENST00000542407 IDI1Q13907 227 aa10.59□□□□□ -0.71
PDLIM5-221ENST00000542407 BCCIPQ9P287 314 aaKnown RBP eCLIP10.59□□□□□ -0.71
PDLIM5-221ENST00000542407 TMF1P82094 1093 aa10.59□□□□□ -0.71
PDLIM5-221ENST00000542407 SLC4A2P04920 1241 aa10.59□□□□□ -0.71
PDLIM5-221ENST00000542407 C14orf93Q9H972 538 aaKnown RBP10.59□□□□□ -0.71
PDLIM5-221ENST00000542407 KTN1Q86UP2 1357 aaKnown RBP10.58□□□□□ -0.72
PDLIM5-221ENST00000542407 HSP90B1P14625 803 aaKnown RBP10.58□□□□□ -0.72
PDLIM5-221ENST00000542407 PIAS4Q8N2W9 510 aaPredicted RBP10.58□□□□□ -0.72
PDLIM5-221ENST00000542407 SLC52A1Q9NWF4 448 aa10.58□□□□□ -0.72
PDLIM5-221ENST00000542407 PARD3Q8TEW0 1356 aa10.58□□□□□ -0.72
PDLIM5-221ENST00000542407 ASXL1Q8IXJ9 1541 aa10.58□□□□□ -0.72
PDLIM5-221ENST00000542407 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.58□□□□□ -0.72
PDLIM5-221ENST00000542407 KDM5AP29375 1690 aaKnown RBP10.58□□□□□ -0.72
PDLIM5-221ENST00000542407 SBNO2Q9Y2G9 1366 aa10.57□□□□□ -0.72
PDLIM5-221ENST00000542407 CHGAP10645 457 aaKnown RBP10.57□□□□□ -0.72
PDLIM5-221ENST00000542407 FBXO31Q5XUX0 539 aaPredicted RBP10.57□□□□□ -0.72
PDLIM5-221ENST00000542407 CHMP4BQ9H444 224 aaKnown RBP10.57□□□□□ -0.72
PDLIM5-221ENST00000542407 MRS2Q9HD23 443 aa10.56□□□□□ -0.72
PDLIM5-221ENST00000542407 ARHGEF28Q8N1W1 1705 aaKnown RBP10.56□□□□□ -0.72
PDLIM5-221ENST00000542407 QRICH2Q9H0J4 1663 aa10.56□□□□□ -0.72
PDLIM5-221ENST00000542407 IPO9Q96P70 1041 aaKnown RBP10.56□□□□□ -0.72
PDLIM5-221ENST00000542407 RALBP1Q15311 655 aa10.54□□□□□ -0.72
PDLIM5-221ENST00000542407 PANK3Q9H999 370 aa10.54□□□□□ -0.72
PDLIM5-221ENST00000542407 LAS1LQ9Y4W2 734 aaKnown RBP10.54□□□□□ -0.72
PDLIM5-221ENST00000542407 MYBBP1AQ9BQG0 1328 aaKnown RBP10.54□□□□□ -0.72
PDLIM5-221ENST00000542407 A2ML1A8K2U0 1454 aa10.54□□□□□ -0.72
PDLIM5-221ENST00000542407 BRD4O60885 1362 aaPredicted RBP10.53□□□□□ -0.72
PDLIM5-221ENST00000542407 VGFO15240 615 aaPredicted RBP10.53□□□□□ -0.72
PDLIM5-221ENST00000542407 ZFP91Q96JP5 570 aaPredicted RBP10.53□□□□□ -0.72
PDLIM5-221ENST00000542407 IPO4Q8TEX9 1081 aaKnown RBP10.53□□□□□ -0.72
PDLIM5-221ENST00000542407 SETD1AO15047 1707 aaKnown RBP10.52□□□□□ -0.72
PDLIM5-221ENST00000542407 BBXQ8WY36 941 aaPredicted RBP10.52□□□□□ -0.73
PDLIM5-221ENST00000542407 LRPPRCP42704 1394 aaKnown RBP10.52□□□□□ -0.73
PDLIM5-221ENST00000542407 NEFMP07197 916 aa10.52□□□□□ -0.73
PDLIM5-221ENST00000542407 CDCA8Q53HL2 280 aa10.51□□□□□ -0.73
PDLIM5-221ENST00000542407 NUTM2DQ5VT03 806 aaPredicted RBP10.51□□□□□ -0.73
PDLIM5-221ENST00000542407 FAM9BQ8IZU0 186 aa10.51□□□□□ -0.73
PDLIM5-221ENST00000542407 TMEM132EQ6IEE7 984 aa10.51□□□□□ -0.73
PDLIM5-221ENST00000542407 PNISRQ8TF01 805 aaKnown RBP10.51□□□□□ -0.73
PDLIM5-221ENST00000542407 CENPJQ9HC77 1338 aaPredicted RBP10.51□□□□□ -0.73
PDLIM5-221ENST00000542407 ZMYM3Q14202 1370 aa10.51□□□□□ -0.73
PDLIM5-221ENST00000542407 ALKQ9UM73 1620 aa10.5□□□□□ -0.73
PDLIM5-221ENST00000542407 TULP4Q9NRJ4 1543 aa10.5□□□□□ -0.73
PDLIM5-221ENST00000542407 CNGB1Q14028 1251 aaPredicted RBP10.5□□□□□ -0.73
PDLIM5-221ENST00000542407 NRXN3Q9Y4C0 1643 aa10.5□□□□□ -0.73
PDLIM5-221ENST00000542407 MLECQ14165 292 aa10.5□□□□□ -0.73
PDLIM5-221ENST00000542407 BRPF3Q9ULD4 1205 aa10.5□□□□□ -0.73
PDLIM5-221ENST00000542407 PTPRMP28827 1452 aa10.5□□□□□ -0.73
PDLIM5-221ENST00000542407 TRAK1Q9UPV9 953 aa10.49□□□□□ -0.73
PDLIM5-221ENST00000542407 NPC1L1Q9UHC9 1359 aa10.49□□□□□ -0.73
PDLIM5-221ENST00000542407 ZBED9Q6R2W3 1325 aa10.49□□□□□ -0.73
PDLIM5-221ENST00000542407 IFNLR1Q8IU57 520 aaPredicted RBP10.48□□□□□ -0.73
PDLIM5-221ENST00000542407 NLRP13Q86W25 1043 aa10.47□□□□□ -0.73
PDLIM5-221ENST00000542407 UBR1Q8IWV7 1749 aa10.47□□□□□ -0.73
PDLIM5-221ENST00000542407 RIMS2Q9UQ26 1411 aa10.47□□□□□ -0.73
PDLIM5-221ENST00000542407 CC2D1BQ5T0F9 858 aaKnown RBP10.47□□□□□ -0.73
PDLIM5-221ENST00000542407 YTHDC2Q9H6S0 1430 aaKnown RBP10.46□□□□□ -0.73
PDLIM5-221ENST00000542407 USP32Q8NFA0 1604 aa10.46□□□□□ -0.74
PDLIM5-221ENST00000542407 TMC1Q8TDI8 760 aa10.46□□□□□ -0.74
PDLIM5-221ENST00000542407 GTF2E1P29083 439 aaPredicted RBP10.45□□□□□ -0.74
PDLIM5-221ENST00000542407 ATF5Q9Y2D1 282 aaPredicted RBP10.45□□□□□ -0.74
PDLIM5-221ENST00000542407 CARD14Q9BXL6 1004 aa10.45□□□□□ -0.74
PDLIM5-221ENST00000542407 DLC1Q96QB1 1528 aa10.45□□□□□ -0.74
PDLIM5-221ENST00000542407 TNRQ92752 1358 aa10.45□□□□□ -0.74
PDLIM5-221ENST00000542407 TEX2Q8IWB9 1127 aa10.44□□□□□ -0.74
PDLIM5-221ENST00000542407 SECISBP2LQ93073 1101 aaKnown RBP10.44□□□□□ -0.74
PDLIM5-221ENST00000542407 C3P01024 1663 aa10.44□□□□□ -0.74
PDLIM5-221ENST00000542407 MAPK8IP2Q13387 824 aaPredicted RBP10.44□□□□□ -0.74
PDLIM5-221ENST00000542407 PUS7Q96PZ0 661 aaKnown RBP10.44□□□□□ -0.74
PDLIM5-221ENST00000542407 KNSTRNQ9Y448 316 aa10.44□□□□□ -0.74
PDLIM5-221ENST00000542407 INSRP06213 1382 aa10.44□□□□□ -0.74
PDLIM5-221ENST00000542407 FER1L4A9Z1Z3 1794 aa10.43□□□□□ -0.74
PDLIM5-221ENST00000542407 BLMP54132 1417 aaPredicted RBP10.43□□□□□ -0.74
PDLIM5-221ENST00000542407 CHRM1P11229 460 aaPredicted RBP10.42□□□□□ -0.74
PDLIM5-221ENST00000542407 TRHP20396 242 aaPredicted RBP10.42□□□□□ -0.74
PDLIM5-221ENST00000542407 KNDC1Q76NI1 1749 aa10.42□□□□□ -0.74
PDLIM5-221ENST00000542407 SENP3-EIF4A1A0A087X0R7 540 aa10.41□□□□□ -0.74
PDLIM5-221ENST00000542407 PPP2R1AP30153 589 aa10.41□□□□□ -0.74
PDLIM5-221ENST00000542407 STAG3Q9UJ98 1225 aa10.41□□□□□ -0.74
PDLIM5-221ENST00000542407 NLRP1Q9C000 1473 aa10.41□□□□□ -0.74
PDLIM5-221ENST00000542407 ESF1Q9H501 851 aaKnown RBP10.41□□□□□ -0.74
PDLIM5-221ENST00000542407 EVC2Q86UK5 1308 aa10.4□□□□□ -0.74
PDLIM5-221ENST00000542407 FTSJ3Q8IY81 847 aaKnown RBP10.4□□□□□ -0.74
PDLIM5-221ENST00000542407 TMEM2Q9UHN6 1383 aa10.4□□□□□ -0.74
PDLIM5-221ENST00000542407 SMG6Q86US8 1419 aaKnown RBP10.4□□□□□ -0.74
PDLIM5-221ENST00000542407 NSD3Q9BZ95 1437 aa10.4□□□□□ -0.74
PDLIM5-221ENST00000542407 IGSF3O75054 1194 aa10.4□□□□□ -0.75
PDLIM5-221ENST00000542407 CANXP27824 592 aaKnown RBP10.39□□□□□ -0.75
PDLIM5-221ENST00000542407 SLC12A5Q9H2X9 1139 aa10.39□□□□□ -0.75
PDLIM5-221ENST00000542407 HSP90AA2PQ14568 343 aaPredicted RBP10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms