RNA–Protein interactions for RNA: ENST00000542113.1

NKRF-204, Transcript of NFKB repressing factor, humanhuman

TSL 3 BASIC

Gene NKRF, Length 3,351 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKRF-204ENST00000542113 WWC1Q8IX03 1113 aa8.74□□□□□ -1.01
NKRF-204ENST00000542113 CLUAP1Q96AJ1 413 aa8.74□□□□□ -1.01
NKRF-204ENST00000542113 CARD14Q9BXL6 1004 aa8.74□□□□□ -1.01
NKRF-204ENST00000542113 ZC3H13Q5T200 1668 aaKnown RBP8.74□□□□□ -1.01
NKRF-204ENST00000542113 QRICH2Q9H0J4 1663 aa8.73□□□□□ -1.01
NKRF-204ENST00000542113 POGZQ7Z3K3 1410 aa8.73□□□□□ -1.01
NKRF-204ENST00000542113 CT47B1P0C2W7 299 aaPredicted RBP8.73□□□□□ -1.01
NKRF-204ENST00000542113 PPLO60437 1756 aa8.73□□□□□ -1.01
NKRF-204ENST00000542113 HECW2Q9P2P5 1572 aa8.73□□□□□ -1.01
NKRF-204ENST00000542113 MYH16Q9H6N6 1097 aa8.73□□□□□ -1.01
NKRF-204ENST00000542113 EVC2Q86UK5 1308 aa8.72□□□□□ -1.01
NKRF-204ENST00000542113 CHGAP10645 457 aaKnown RBP8.72□□□□□ -1.01
NKRF-204ENST00000542113 RGS3P49796 1198 aa8.72□□□□□ -1.01
NKRF-204ENST00000542113 BECN1Q14457 450 aa8.72□□□□□ -1.01
NKRF-204ENST00000542113 ADGRB1O14514 1584 aa8.72□□□□□ -1.01
NKRF-204ENST00000542113 NPATQ14207 1427 aa8.72□□□□□ -1.01
NKRF-204ENST00000542113 IQSEC2Q5JU85 1478 aa8.72□□□□□ -1.01
NKRF-204ENST00000542113 BCAR3O75815 825 aa8.72□□□□□ -1.01
NKRF-204ENST00000542113 UPF2Q9HAU5 1272 aaKnown RBP8.72□□□□□ -1.01
NKRF-204ENST00000542113 ANKRD36BQ8N2N9 1353 aa8.71□□□□□ -1.01
NKRF-204ENST00000542113 VGFO15240 615 aaPredicted RBP8.71□□□□□ -1.01
NKRF-204ENST00000542113 PHF23Q9BUL5 403 aaPredicted RBP8.71□□□□□ -1.02
NKRF-204ENST00000542113 SPINK5Q9NQ38 1064 aaPredicted RBP8.71□□□□□ -1.02
NKRF-204ENST00000542113 SHPRHQ149N8 1683 aa8.71□□□□□ -1.02
NKRF-204ENST00000542113 VIRMAQ69YN4 1812 aaKnown RBP8.7□□□□□ -1.02
NKRF-204ENST00000542113 ABCC3O15438 1527 aa8.7□□□□□ -1.02
NKRF-204ENST00000542113 TRAK1Q9UPV9 953 aa8.7□□□□□ -1.02
NKRF-204ENST00000542113 NFKBIBQ15653 356 aa8.7□□□□□ -1.02
NKRF-204ENST00000542113 CD109Q6YHK3 1445 aa8.69□□□□□ -1.02
NKRF-204ENST00000542113 TCP11L2Q8N4U5 519 aa8.69□□□□□ -1.02
NKRF-204ENST00000542113 RARSP54136 660 aaKnown RBP8.69□□□□□ -1.02
NKRF-204ENST00000542113 GSE1Q14687 1217 aa8.69□□□□□ -1.02
NKRF-204ENST00000542113 RWDD1Q9H446 243 aaPredicted RBP8.69□□□□□ -1.02
NKRF-204ENST00000542113 GLI2P10070 1586 aa8.69□□□□□ -1.02
NKRF-204ENST00000542113 NEO1Q92859 1461 aa8.69□□□□□ -1.02
NKRF-204ENST00000542113 ZFYVE9O95405 1425 aa8.68□□□□□ -1.02
NKRF-204ENST00000542113 ARHGAP31Q2M1Z3 1444 aa8.68□□□□□ -1.02
NKRF-204ENST00000542113 FRMPD1Q5SYB0 1578 aa8.68□□□□□ -1.02
NKRF-204ENST00000542113 SKAP1Q86WV1 359 aa8.68□□□□□ -1.02
NKRF-204ENST00000542113 PNNQ9H307 717 aaKnown RBP8.68□□□□□ -1.02
NKRF-204ENST00000542113 CAMSAP1Q5T5Y3 1602 aa8.68□□□□□ -1.02
NKRF-204ENST00000542113 SLC12A5Q9H2X9 1139 aa8.68□□□□□ -1.02
NKRF-204ENST00000542113 COG6Q9Y2V7 657 aa8.68□□□□□ -1.02
NKRF-204ENST00000542113 ABCC11Q96J66 1382 aa8.68□□□□□ -1.02
NKRF-204ENST00000542113 MTHFSP49914 203 aa8.67□□□□□ -1.02
NKRF-204ENST00000542113 FRAT1Q92837 279 aaPredicted RBP8.67□□□□□ -1.02
NKRF-204ENST00000542113 PIK3C2BO00750 1634 aa8.67□□□□□ -1.02
NKRF-204ENST00000542113 ADGRB2O60241 1585 aa8.67□□□□□ -1.02
NKRF-204ENST00000542113 ATAD2Q6PL18 1390 aa8.67□□□□□ -1.02
NKRF-204ENST00000542113 GGT6Q6P531 493 aa8.67□□□□□ -1.02
NKRF-204ENST00000542113 PANK1Q8TE04 598 aa8.67□□□□□ -1.02
NKRF-204ENST00000542113 SLC52A1Q9NWF4 448 aa8.66□□□□□ -1.02
NKRF-204ENST00000542113 ARHGEF28Q8N1W1 1705 aaKnown RBP8.66□□□□□ -1.02
NKRF-204ENST00000542113 MED14O60244 1454 aa8.66□□□□□ -1.02
NKRF-204ENST00000542113 IGHDP01880 384 aa8.66□□□□□ -1.02
NKRF-204ENST00000542113 ZKSCAN2Q63HK3 967 aa8.66□□□□□ -1.02
NKRF-204ENST00000542113 DMRT2Q9Y5R5 561 aa8.66□□□□□ -1.02
NKRF-204ENST00000542113 NEXMIFQ5QGS0 1516 aa8.66□□□□□ -1.02
NKRF-204ENST00000542113 IL16Q14005 1332 aa8.66□□□□□ -1.02
NKRF-204ENST00000542113 NEUROD2Q15784 382 aa8.65□□□□□ -1.02
NKRF-204ENST00000542113 FTSJ3Q8IY81 847 aaKnown RBP8.65□□□□□ -1.02
NKRF-204ENST00000542113 TULP4Q9NRJ4 1543 aa8.65□□□□□ -1.02
NKRF-204ENST00000542113 U2AF1L5P0DN76 240 aaPredicted RBP8.65□□□□□ -1.02
NKRF-204ENST00000542113 U2AF1Q01081 240 aaKnown RBP eCLIP8.65□□□□□ -1.02
NKRF-204ENST00000542113 TERF2IPQ9NYB0 399 aa8.65□□□□□ -1.02
NKRF-204ENST00000542113 TNNT2P45379 298 aaPredicted RBP8.65□□□□□ -1.03
NKRF-204ENST00000542113 MVPQ14764 893 aaKnown RBP8.64□□□□□ -1.03
NKRF-204ENST00000542113 TMEM132EQ6IEE7 984 aa8.64□□□□□ -1.03
NKRF-204ENST00000542113 RRP7AQ9Y3A4 280 aaKnown RBP8.64□□□□□ -1.03
NKRF-204ENST00000542113 DZIP1LQ8IYY4 767 aaKnown RBP8.63□□□□□ -1.03
NKRF-204ENST00000542113 CHMP4BQ9H444 224 aaKnown RBP8.63□□□□□ -1.03
NKRF-204ENST00000542113 DDX19BQ9UMR2 479 aa8.63□□□□□ -1.03
NKRF-204ENST00000542113 SLC4A3P48751 1232 aa8.63□□□□□ -1.03
NKRF-204ENST00000542113 KIF16BQ96L93 1317 aa8.63□□□□□ -1.03
NKRF-204ENST00000542113 IPO8O15397 1037 aaKnown RBP8.62□□□□□ -1.03
NKRF-204ENST00000542113 ZNF428Q96B54 188 aa8.62□□□□□ -1.03
NKRF-204ENST00000542113 DIP2CQ9Y2E4 1556 aa8.62□□□□□ -1.03
NKRF-204ENST00000542113 HDGFL2Q7Z4V5 671 aaPredicted RBP8.62□□□□□ -1.03
NKRF-204ENST00000542113 PDZRN3Q9UPQ7 1066 aa8.62□□□□□ -1.03
NKRF-204ENST00000542113 USP19O94966 1318 aa8.62□□□□□ -1.03
NKRF-204ENST00000542113 ANKRD26Q9UPS8 1709 aa8.61□□□□□ -1.03
NKRF-204ENST00000542113 A0A1W2PP64 1363 aa8.61□□□□□ -1.03
NKRF-204ENST00000542113 SRPK2P78362 688 aaKnown RBP8.61□□□□□ -1.03
NKRF-204ENST00000542113 SMC4Q9NTJ3 1288 aa8.61□□□□□ -1.03
NKRF-204ENST00000542113 CLTCQ00610 1675 aaKnown RBP8.61□□□□□ -1.03
NKRF-204ENST00000542113 TBC1D32Q96NH3 1257 aa8.61□□□□□ -1.03
NKRF-204ENST00000542113 HDAC1Q13547 482 aaPredicted RBP8.61□□□□□ -1.03
NKRF-204ENST00000542113 PCDHB15Q9Y5E8 787 aa8.61□□□□□ -1.03
NKRF-204ENST00000542113 CALD1Q05682 793 aaKnown RBP8.6□□□□□ -1.03
NKRF-204ENST00000542113 NLRP1Q9C000 1473 aa8.6□□□□□ -1.03
NKRF-204ENST00000542113 EIF5BO60841 1220 aaKnown RBP8.6□□□□□ -1.03
NKRF-204ENST00000542113 TMPOP42166 694 aaKnown RBP8.6□□□□□ -1.03
NKRF-204ENST00000542113 CABP2Q9NPB3 220 aa8.6□□□□□ -1.03
NKRF-204ENST00000542113 COL3A1P02461 1466 aaPredicted RBP8.6□□□□□ -1.03
NKRF-204ENST00000542113 SIGLEC1Q9BZZ2 1709 aa8.59□□□□□ -1.03
NKRF-204ENST00000542113 U2SURPO15042 1029 aaKnown RBP8.59□□□□□ -1.03
NKRF-204ENST00000542113 FRAT2O75474 233 aaPredicted RBP8.59□□□□□ -1.03
NKRF-204ENST00000542113 RLBP1P12271 317 aa8.59□□□□□ -1.03
NKRF-204ENST00000542113 ALDH1L2Q3SY69 923 aa8.59□□□□□ -1.03
NKRF-204ENST00000542113 ATF7IPQ6VMQ6 1270 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms