RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 XPCQ01831 940 aaPredicted RBP13.02□□□□□ -0.33
CLSTN3-212ENST00000541770 VGFO15240 615 aaPredicted RBP13.01□□□□□ -0.33
CLSTN3-212ENST00000541770 PPLO60437 1756 aa13□□□□□ -0.33
CLSTN3-212ENST00000541770 NPHP3Q7Z494 1330 aa13□□□□□ -0.33
CLSTN3-212ENST00000541770 NUTM2FA1L443 756 aa13□□□□□ -0.33
CLSTN3-212ENST00000541770 FOXO3O43524 673 aa12.99□□□□□ -0.33
CLSTN3-212ENST00000541770 CCDC125Q86Z20 511 aa12.99□□□□□ -0.33
CLSTN3-212ENST00000541770 GJD4Q96KN9 370 aaPredicted RBP12.99□□□□□ -0.33
CLSTN3-212ENST00000541770 BRWD3Q6RI45 1802 aa12.99□□□□□ -0.33
CLSTN3-212ENST00000541770 MYOM2P54296 1465 aa12.98□□□□□ -0.33
CLSTN3-212ENST00000541770 BCL9LQ86UU0 1499 aa12.98□□□□□ -0.33
CLSTN3-212ENST00000541770 HFM1A2PYH4 1435 aa12.98□□□□□ -0.33
CLSTN3-212ENST00000541770 NAIPQ13075 1403 aa12.97□□□□□ -0.33
CLSTN3-212ENST00000541770 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.97□□□□□ -0.33
CLSTN3-212ENST00000541770 PLEKHG5O94827 1062 aa12.97□□□□□ -0.33
CLSTN3-212ENST00000541770 CDC42BPGQ6DT37 1551 aa12.97□□□□□ -0.33
CLSTN3-212ENST00000541770 PXDNQ92626 1479 aa12.97□□□□□ -0.33
CLSTN3-212ENST00000541770 STK26Q9P289 416 aa12.96□□□□□ -0.33
CLSTN3-212ENST00000541770 LRPPRCP42704 1394 aaKnown RBP12.95□□□□□ -0.34
CLSTN3-212ENST00000541770 HAP1P54257 671 aaPredicted RBP12.95□□□□□ -0.34
CLSTN3-212ENST00000541770 SF3B2Q13435 895 aaKnown RBP12.95□□□□□ -0.34
CLSTN3-212ENST00000541770 GLI3P10071 1580 aa12.94□□□□□ -0.34
CLSTN3-212ENST00000541770 RPGRIP1LQ68CZ1 1315 aa12.94□□□□□ -0.34
CLSTN3-212ENST00000541770 DEFB132Q7Z7B7 95 aa12.94□□□□□ -0.34
CLSTN3-212ENST00000541770 UNC5CLQ8IV45 518 aa12.94□□□□□ -0.34
CLSTN3-212ENST00000541770 CCDC9Q9Y3X0 531 aaKnown RBP12.94□□□□□ -0.34
CLSTN3-212ENST00000541770 RALGAPBQ86X10 1494 aa12.93□□□□□ -0.34
CLSTN3-212ENST00000541770 WAPLQ7Z5K2 1190 aa12.93□□□□□ -0.34
CLSTN3-212ENST00000541770 RGPD8O14715 1765 aaPredicted RBP12.93□□□□□ -0.34
CLSTN3-212ENST00000541770 BLMP54132 1417 aaPredicted RBP12.93□□□□□ -0.34
CLSTN3-212ENST00000541770 PRAG1Q86YV5 1406 aa12.92□□□□□ -0.34
CLSTN3-212ENST00000541770 SLC4A1APQ9BWU0 796 aaKnown RBP12.92□□□□□ -0.34
CLSTN3-212ENST00000541770 KIF1AQ12756 1690 aa12.92□□□□□ -0.34
CLSTN3-212ENST00000541770 USP32Q8NFA0 1604 aa12.91□□□□□ -0.34
CLSTN3-212ENST00000541770 FMN2Q9NZ56 1722 aa12.91□□□□□ -0.34
CLSTN3-212ENST00000541770 A0A0G2JS52 829 aa12.91□□□□□ -0.34
CLSTN3-212ENST00000541770 MYT1Q01538 1121 aa12.91□□□□□ -0.34
CLSTN3-212ENST00000541770 PLCH1Q4KWH8 1693 aa12.91□□□□□ -0.34
CLSTN3-212ENST00000541770 SLIT2O94813 1529 aa12.9□□□□□ -0.34
CLSTN3-212ENST00000541770 RGL3Q3MIN7 710 aa12.9□□□□□ -0.34
CLSTN3-212ENST00000541770 LMOD2Q6P5Q4 547 aa12.9□□□□□ -0.34
CLSTN3-212ENST00000541770 KRT28Q7Z3Y7 464 aa12.9□□□□□ -0.34
CLSTN3-212ENST00000541770 SEPT12Q8IYM1 358 aa12.9□□□□□ -0.34
CLSTN3-212ENST00000541770 IFT172Q9UG01 1749 aa12.9□□□□□ -0.34
CLSTN3-212ENST00000541770 SPATA31A3Q5VYP0 1347 aa12.89□□□□□ -0.35
CLSTN3-212ENST00000541770 ADGRF5Q8IZF2 1346 aa12.89□□□□□ -0.35
CLSTN3-212ENST00000541770 ACIN1Q9UKV3 1341 aaKnown RBP12.89□□□□□ -0.35
CLSTN3-212ENST00000541770 EP400Q96L91 3159 aa12.89□□□□□ -0.35
CLSTN3-212ENST00000541770 KNDC1Q76NI1 1749 aa12.89□□□□□ -0.35
CLSTN3-212ENST00000541770 TRIM26Q12899 539 aaPredicted RBP12.89□□□□□ -0.35
CLSTN3-212ENST00000541770 TMEM132EQ6IEE7 984 aa12.89□□□□□ -0.35
CLSTN3-212ENST00000541770 PLEKHH1Q9ULM0 1364 aa12.89□□□□□ -0.35
CLSTN3-212ENST00000541770 SRCAPQ6ZRS2 3230 aa12.88□□□□□ -0.35
CLSTN3-212ENST00000541770 PSDA5PKW4 1024 aaPredicted RBP12.88□□□□□ -0.35
CLSTN3-212ENST00000541770 CABLES1Q8TDN4 633 aa12.88□□□□□ -0.35
CLSTN3-212ENST00000541770 NWD2Q9ULI1 1742 aa12.88□□□□□ -0.35
CLSTN3-212ENST00000541770 CCDC144AA2RUR9 1427 aa12.88□□□□□ -0.35
CLSTN3-212ENST00000541770 LRP5O75197 1615 aa12.87□□□□□ -0.35
CLSTN3-212ENST00000541770 ABCA3Q99758 1704 aa12.86□□□□□ -0.35
CLSTN3-212ENST00000541770 KRT27Q7Z3Y8 459 aa12.86□□□□□ -0.35
CLSTN3-212ENST00000541770 HRCP23327 699 aa12.85□□□□□ -0.35
CLSTN3-212ENST00000541770 PSME1Q06323 249 aa12.85□□□□□ -0.35
CLSTN3-212ENST00000541770 VPS72Q15906 364 aa12.85□□□□□ -0.35
CLSTN3-212ENST00000541770 TNS3Q68CZ2 1445 aa12.85□□□□□ -0.35
CLSTN3-212ENST00000541770 BAG6P46379 1132 aa12.84□□□□□ -0.35
CLSTN3-212ENST00000541770 PHF8Q9UPP1 1060 aa12.84□□□□□ -0.35
CLSTN3-212ENST00000541770 TECPR2O15040 1411 aa12.84□□□□□ -0.35
CLSTN3-212ENST00000541770 RAB3GAP2Q9H2M9 1393 aa12.83□□□□□ -0.36
CLSTN3-212ENST00000541770 ABCC11Q96J66 1382 aa12.82□□□□□ -0.36
CLSTN3-212ENST00000541770 YTHDC2Q9H6S0 1430 aaKnown RBP12.82□□□□□ -0.36
CLSTN3-212ENST00000541770 SAFB2Q14151 953 aaKnown RBP eCLIP12.82□□□□□ -0.36
CLSTN3-212ENST00000541770 RGPD1P0DJD0 1748 aa12.82□□□□□ -0.36
CLSTN3-212ENST00000541770 ANKRD30BQ9BXX2 1392 aa12.81□□□□□ -0.36
CLSTN3-212ENST00000541770 FAM98CQ17RN3 349 aaKnown RBP12.81□□□□□ -0.36
CLSTN3-212ENST00000541770 PMFBP1Q8TBY8 1022 aa12.81□□□□□ -0.36
CLSTN3-212ENST00000541770 NRAPQ86VF7 1730 aa12.81□□□□□ -0.36
CLSTN3-212ENST00000541770 EN1Q05925 392 aaPredicted RBP12.8□□□□□ -0.36
CLSTN3-212ENST00000541770 PIK3C2GO75747 1445 aa12.79□□□□□ -0.36
CLSTN3-212ENST00000541770 NRXN1Q9ULB1 1477 aa12.79□□□□□ -0.36
CLSTN3-212ENST00000541770 FAM83GA6ND36 823 aa12.79□□□□□ -0.36
CLSTN3-212ENST00000541770 ONECUT3O60422 494 aaPredicted RBP12.79□□□□□ -0.36
CLSTN3-212ENST00000541770 FAM182BQ5T319 152 aa12.79□□□□□ -0.36
CLSTN3-212ENST00000541770 BTG4Q9NY30 223 aa12.79□□□□□ -0.36
CLSTN3-212ENST00000541770 ARHGEF10O15013 1369 aa12.79□□□□□ -0.36
CLSTN3-212ENST00000541770 SPATA31E1Q6ZUB1 1445 aa12.79□□□□□ -0.36
CLSTN3-212ENST00000541770 SBNO1A3KN83 1393 aa12.78□□□□□ -0.36
CLSTN3-212ENST00000541770 COL14A1Q05707 1796 aaKnown RBP12.77□□□□□ -0.36
CLSTN3-212ENST00000541770 R3HDM1Q15032 1099 aaKnown RBP12.77□□□□□ -0.37
CLSTN3-212ENST00000541770 PRAM1Q96QH2 718 aa12.77□□□□□ -0.37
CLSTN3-212ENST00000541770 POGKQ9P215 609 aa12.77□□□□□ -0.37
CLSTN3-212ENST00000541770 DHX57Q6P158 1386 aaKnown RBP12.77□□□□□ -0.37
CLSTN3-212ENST00000541770 CFAP70Q5T0N1 1121 aa12.76□□□□□ -0.37
CLSTN3-212ENST00000541770 MPHOSPH9Q99550 1183 aa12.76□□□□□ -0.37
CLSTN3-212ENST00000541770 TNS1Q9HBL0 1735 aaKnown RBP12.76□□□□□ -0.37
CLSTN3-212ENST00000541770 TRPM3Q9HCF6 1732 aaPredicted RBP12.76□□□□□ -0.37
CLSTN3-212ENST00000541770 SIRT1Q96EB6 747 aa12.75□□□□□ -0.37
CLSTN3-212ENST00000541770 ALS2Q96Q42 1657 aa12.74□□□□□ -0.37
CLSTN3-212ENST00000541770 C14orf93Q9H972 538 aaKnown RBP12.74□□□□□ -0.37
CLSTN3-212ENST00000541770 ADGRB2O60241 1585 aa12.73□□□□□ -0.37
CLSTN3-212ENST00000541770 PAK3O75914 559 aaPredicted RBP12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms