RNA–Protein interactions for RNA: ENST00000541513.2

DDB1-219, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 4

Gene DDB1, Length 958 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-219ENST00000541513 PSMD1Q99460 953 aa7.89□□□□□ -1.15
DDB1-219ENST00000541513 WDR62O43379 1518 aa7.88□□□□□ -1.15
DDB1-219ENST00000541513 DSG2Q14126 1118 aa7.88□□□□□ -1.15
DDB1-219ENST00000541513 WASHC4Q2M389 1173 aa7.88□□□□□ -1.15
DDB1-219ENST00000541513 BCCIPQ9P287 314 aaKnown RBP eCLIP7.88□□□□□ -1.15
DDB1-219ENST00000541513 PALM3A6NDB9 673 aaPredicted RBP7.87□□□□□ -1.15
DDB1-219ENST00000541513 TAF7LQ5H9L4 462 aa7.87□□□□□ -1.15
DDB1-219ENST00000541513 ZNF592Q92610 1267 aa7.87□□□□□ -1.15
DDB1-219ENST00000541513 CUX2O14529 1486 aa7.87□□□□□ -1.15
DDB1-219ENST00000541513 ABCC8Q09428 1581 aa7.86□□□□□ -1.15
DDB1-219ENST00000541513 DNMBPQ6XZF7 1577 aa7.86□□□□□ -1.15
DDB1-219ENST00000541513 RNF166Q96A37 237 aaPredicted RBP7.86□□□□□ -1.15
DDB1-219ENST00000541513 PHOX2BQ99453 314 aa7.86□□□□□ -1.15
DDB1-219ENST00000541513 URB2Q14146 1524 aaKnown RBP7.86□□□□□ -1.15
DDB1-219ENST00000541513 FOXK1P85037 733 aa7.85□□□□□ -1.15
DDB1-219ENST00000541513 NAALADL2Q58DX5 795 aa7.85□□□□□ -1.15
DDB1-219ENST00000541513 GIPC2Q8TF65 315 aa7.85□□□□□ -1.15
DDB1-219ENST00000541513 TBC1D2Q9BYX2 928 aa7.85□□□□□ -1.15
DDB1-219ENST00000541513 TOPBP1Q92547 1522 aa7.84□□□□□ -1.15
DDB1-219ENST00000541513 KDM4AO75164 1064 aa7.84□□□□□ -1.15
DDB1-219ENST00000541513 LMOD1P29536 600 aaPredicted RBP7.84□□□□□ -1.15
DDB1-219ENST00000541513 ELOAQ14241 798 aaKnown RBP7.84□□□□□ -1.15
DDB1-219ENST00000541513 TICAM2Q86XR7 235 aa7.84□□□□□ -1.15
DDB1-219ENST00000541513 GIMAP6Q6P9H5 292 aa7.83□□□□□ -1.16
DDB1-219ENST00000541513 NPAS4Q8IUM7 802 aa7.83□□□□□ -1.16
DDB1-219ENST00000541513 ALG2Q9H553 416 aa7.83□□□□□ -1.16
DDB1-219ENST00000541513 LIMD1Q9UGP4 676 aa7.83□□□□□ -1.16
DDB1-219ENST00000541513 NDUFB9Q9Y6M9 179 aa7.83□□□□□ -1.16
DDB1-219ENST00000541513 CUX1P39880 1505 aa7.83□□□□□ -1.16
DDB1-219ENST00000541513 BIVM-ERCC5R4GMW8 1640 aa7.82□□□□□ -1.16
DDB1-219ENST00000541513 PLEKHD1A6NEE1 506 aa7.82□□□□□ -1.16
DDB1-219ENST00000541513 PRIM1P49642 420 aaKnown RBP7.82□□□□□ -1.16
DDB1-219ENST00000541513 GOLGA2Q08379 1002 aa7.82□□□□□ -1.16
DDB1-219ENST00000541513 ZNF326Q5BKZ1 582 aaKnown RBP7.82□□□□□ -1.16
DDB1-219ENST00000541513 NOL8Q76FK4 1167 aaKnown RBP7.82□□□□□ -1.16
DDB1-219ENST00000541513 PDCD7Q8N8D1 485 aaKnown RBP7.82□□□□□ -1.16
DDB1-219ENST00000541513 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.82□□□□□ -1.16
DDB1-219ENST00000541513 CLSTN1O94985 981 aa7.81□□□□□ -1.16
DDB1-219ENST00000541513 RECKO95980 971 aa7.81□□□□□ -1.16
DDB1-219ENST00000541513 PHLDB3Q6NSJ2 640 aa7.81□□□□□ -1.16
DDB1-219ENST00000541513 UCN2Q96RP3 112 aa7.81□□□□□ -1.16
DDB1-219ENST00000541513 TOP2BQ02880 1626 aa7.81□□□□□ -1.16
DDB1-219ENST00000541513 SOWAHDA6NJG2 315 aa7.8□□□□□ -1.16
DDB1-219ENST00000541513 ARID4AP29374 1257 aaPredicted RBP7.8□□□□□ -1.16
DDB1-219ENST00000541513 NOP9Q86U38 636 aaKnown RBP7.8□□□□□ -1.16
DDB1-219ENST00000541513 GJD4Q96KN9 370 aaPredicted RBP7.8□□□□□ -1.16
DDB1-219ENST00000541513 WRNQ14191 1432 aaPredicted RBP eCLIP7.79□□□□□ -1.16
DDB1-219ENST00000541513 MARCH6O60337 910 aa7.79□□□□□ -1.16
DDB1-219ENST00000541513 MAP3K9P80192 1104 aa7.79□□□□□ -1.16
DDB1-219ENST00000541513 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.79□□□□□ -1.16
DDB1-219ENST00000541513 TFIP11Q9UBB9 837 aaKnown RBP7.79□□□□□ -1.16
DDB1-219ENST00000541513 BRPF3Q9ULD4 1205 aa7.79□□□□□ -1.16
DDB1-219ENST00000541513 MAFBQ9Y5Q3 323 aaPredicted RBP7.79□□□□□ -1.16
DDB1-219ENST00000541513 SYNJ1O43426 1573 aa7.79□□□□□ -1.16
DDB1-219ENST00000541513 GPR37L1O60883 481 aa7.78□□□□□ -1.16
DDB1-219ENST00000541513 MARSP56192 900 aaKnown RBP7.78□□□□□ -1.16
DDB1-219ENST00000541513 DPH6Q7L8W6 267 aa7.78□□□□□ -1.16
DDB1-219ENST00000541513 RIC3Q7Z5B4 369 aa7.78□□□□□ -1.16
DDB1-219ENST00000541513 ZNF710Q8N1W2 664 aa7.78□□□□□ -1.16
DDB1-219ENST00000541513 L3MBTL3Q96JM7 780 aaPredicted RBP7.78□□□□□ -1.16
DDB1-219ENST00000541513 RIPOR2Q9Y4F9 1068 aa7.78□□□□□ -1.16
DDB1-219ENST00000541513 POLA1P09884 1462 aaPredicted RBP7.78□□□□□ -1.16
DDB1-219ENST00000541513 SPTLC1O15269 473 aa7.77□□□□□ -1.17
DDB1-219ENST00000541513 SOX11P35716 441 aa7.77□□□□□ -1.17
DDB1-219ENST00000541513 C3orf67Q6ZVT6 689 aa7.77□□□□□ -1.17
DDB1-219ENST00000541513 NPDC1Q9NQX5 325 aaPredicted RBP7.77□□□□□ -1.17
DDB1-219ENST00000541513 PPP1R1BQ9UD71 204 aaPredicted RBP7.77□□□□□ -1.17
DDB1-219ENST00000541513 TARBP1Q13395 1621 aaKnown RBP7.77□□□□□ -1.17
DDB1-219ENST00000541513 FGD5Q6ZNL6 1462 aa7.76□□□□□ -1.17
DDB1-219ENST00000541513 IFT140Q96RY7 1462 aa7.76□□□□□ -1.17
DDB1-219ENST00000541513 LOC102724159A0A0B4J2E5 919 aa7.76□□□□□ -1.17
DDB1-219ENST00000541513 USP17L8P0C7I0 530 aa7.76□□□□□ -1.17
DDB1-219ENST00000541513 HOXB3P14651 431 aaPredicted RBP7.76□□□□□ -1.17
DDB1-219ENST00000541513 PWP2Q15269 919 aaKnown RBP7.76□□□□□ -1.17
DDB1-219ENST00000541513 DDX12PQ92771 950 aa7.76□□□□□ -1.17
DDB1-219ENST00000541513 WDR97A6NE52 1622 aa7.76□□□□□ -1.17
DDB1-219ENST00000541513 ANKRD33BA6NCL7 494 aa7.75□□□□□ -1.17
DDB1-219ENST00000541513 SSFA2P28290 1259 aa7.75□□□□□ -1.17
DDB1-219ENST00000541513 GJA5P36382 358 aa7.75□□□□□ -1.17
DDB1-219ENST00000541513 TMEM164Q5U3C3 297 aa7.75□□□□□ -1.17
DDB1-219ENST00000541513 ZNF662Q6ZS27 426 aa7.75□□□□□ -1.17
DDB1-219ENST00000541513 FBXO33Q7Z6M2 555 aa7.75□□□□□ -1.17
DDB1-219ENST00000541513 ILDR1Q86SU0 546 aaPredicted RBP7.75□□□□□ -1.17
DDB1-219ENST00000541513 METTL3Q86U44 580 aaKnown RBP7.75□□□□□ -1.17
DDB1-219ENST00000541513 CUEDC1Q9NWM3 386 aaPredicted RBP7.75□□□□□ -1.17
DDB1-219ENST00000541513 ZMIZ1Q9ULJ6 1067 aa7.75□□□□□ -1.17
DDB1-219ENST00000541513 LILRB3O75022 631 aa7.74□□□□□ -1.17
DDB1-219ENST00000541513 CDCA8Q53HL2 280 aa7.74□□□□□ -1.17
DDB1-219ENST00000541513 PLPP6Q8IY26 295 aa7.74□□□□□ -1.17
DDB1-219ENST00000541513 MICAL1Q8TDZ2 1067 aa7.74□□□□□ -1.17
DDB1-219ENST00000541513 PPME1Q9Y570 386 aa7.74□□□□□ -1.17
DDB1-219ENST00000541513 AP1G2O75843 785 aa7.73□□□□□ -1.17
DDB1-219ENST00000541513 RSBN1LQ6PCB5 846 aaPredicted RBP7.73□□□□□ -1.17
DDB1-219ENST00000541513 TMC2Q8TDI7 906 aa7.73□□□□□ -1.17
DDB1-219ENST00000541513 TMA7Q9Y2S6 64 aaKnown RBP7.73□□□□□ -1.17
DDB1-219ENST00000541513 SOGA1O94964 1423 aa7.72□□□□□ -1.17
DDB1-219ENST00000541513 OATP04181 439 aa7.72□□□□□ -1.17
DDB1-219ENST00000541513 VAC14Q08AM6 782 aa7.72□□□□□ -1.17
DDB1-219ENST00000541513 TMED8Q6PL24 325 aaPredicted RBP7.72□□□□□ -1.17
DDB1-219ENST00000541513 RBM46Q8TBY0 533 aaKnown RBP7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms