RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 PRAM1Q96QH2 718 aa26.7■■□□□ 1.86
VPS33A-205ENST00000541169 NALCNQ8IZF0 1738 aa26.7■■□□□ 1.86
VPS33A-205ENST00000541169 EIF3AQ14152 1382 aaKnown RBP26.7■■□□□ 1.86
VPS33A-205ENST00000541169 ARHGEF28Q8N1W1 1705 aaKnown RBP26.68■■□□□ 1.86
VPS33A-205ENST00000541169 WAPLQ7Z5K2 1190 aa26.68■■□□□ 1.86
VPS33A-205ENST00000541169 CDC42BPGQ6DT37 1551 aa26.67■■□□□ 1.86
VPS33A-205ENST00000541169 SLAIN2Q9P270 581 aa26.66■■□□□ 1.86
VPS33A-205ENST00000541169 CARD11Q9BXL7 1154 aa26.65■■□□□ 1.86
VPS33A-205ENST00000541169 PLEKHH1Q9ULM0 1364 aa26.63■■□□□ 1.85
VPS33A-205ENST00000541169 ADGRB2O60241 1585 aa26.63■■□□□ 1.85
VPS33A-205ENST00000541169 CENPJQ9HC77 1338 aaPredicted RBP26.61■■□□□ 1.85
VPS33A-205ENST00000541169 SLC24A1O60721 1099 aa26.6■■□□□ 1.85
VPS33A-205ENST00000541169 MST1RQ04912 1400 aa26.57■■□□□ 1.84
VPS33A-205ENST00000541169 PIP4K2BP78356 416 aa26.57■■□□□ 1.84
VPS33A-205ENST00000541169 SAFB2Q14151 953 aaKnown RBP eCLIP26.56■■□□□ 1.84
VPS33A-205ENST00000541169 SCAF1Q9H7N4 1312 aaKnown RBP26.56■■□□□ 1.84
VPS33A-205ENST00000541169 FMN2Q9NZ56 1722 aa26.53■■□□□ 1.84
VPS33A-205ENST00000541169 SBNO2Q9Y2G9 1366 aa26.53■■□□□ 1.84
VPS33A-205ENST00000541169 C1orf167Q5SNV9 1468 aa26.53■■□□□ 1.84
VPS33A-205ENST00000541169 ANKARQ7Z5J8 1434 aa26.52■■□□□ 1.84
VPS33A-205ENST00000541169 MINK1Q8N4C8 1332 aaPredicted RBP26.52■■□□□ 1.84
VPS33A-205ENST00000541169 QRICH2Q9H0J4 1663 aa26.52■■□□□ 1.84
VPS33A-205ENST00000541169 ROBO1Q9Y6N7 1651 aa26.52■■□□□ 1.84
VPS33A-205ENST00000541169 WASLO00401 505 aaPredicted RBP26.51■■□□□ 1.83
VPS33A-205ENST00000541169 ILDR1Q86SU0 546 aaPredicted RBP26.48■■□□□ 1.83
VPS33A-205ENST00000541169 TULP4Q9NRJ4 1543 aa26.47■■□□□ 1.83
VPS33A-205ENST00000541169 EVC2Q86UK5 1308 aa26.46■■□□□ 1.83
VPS33A-205ENST00000541169 BRINP3Q76B58 766 aa26.46■■□□□ 1.83
VPS33A-205ENST00000541169 HIRIP3Q9BW71 556 aaPredicted RBP26.46■■□□□ 1.83
VPS33A-205ENST00000541169 USP47Q96K76 1375 aa26.45■■□□□ 1.82
VPS33A-205ENST00000541169 ESCO1Q5FWF5 840 aa26.43■■□□□ 1.82
VPS33A-205ENST00000541169 CDK19Q9BWU1 502 aa26.43■■□□□ 1.82
VPS33A-205ENST00000541169 KIF1AQ12756 1690 aa26.43■■□□□ 1.82
VPS33A-205ENST00000541169 AHDC1Q5TGY3 1603 aaPredicted RBP26.42■■□□□ 1.82
VPS33A-205ENST00000541169 ITSN1Q15811 1721 aa26.41■■□□□ 1.82
VPS33A-205ENST00000541169 PUS7Q96PZ0 661 aaKnown RBP26.4■■□□□ 1.82
VPS33A-205ENST00000541169 ST20-MTHFSA0A0A6YYL1 179 aa26.39■■□□□ 1.82
VPS33A-205ENST00000541169 NPHP3Q7Z494 1330 aa26.39■■□□□ 1.81
VPS33A-205ENST00000541169 SRPK2P78362 688 aaKnown RBP26.38■■□□□ 1.81
VPS33A-205ENST00000541169 ORAI2Q96SN7 254 aa26.38■■□□□ 1.81
VPS33A-205ENST00000541169 NHSL1Q5SYE7 1610 aa26.38■■□□□ 1.81
VPS33A-205ENST00000541169 EIF4G2P78344 907 aaKnown RBP eCLIP26.37■■□□□ 1.816e-9■■■■■ 37.6
VPS33A-205ENST00000541169 NUDT16Q96DE0 195 aaKnown RBP26.37■■□□□ 1.81
VPS33A-205ENST00000541169 CCDC61Q9Y6R9 512 aa26.37■■□□□ 1.81
VPS33A-205ENST00000541169 PHLPP1O60346 1717 aa26.36■■□□□ 1.81
VPS33A-205ENST00000541169 USP32Q8NFA0 1604 aa26.36■■□□□ 1.81
VPS33A-205ENST00000541169 NUTM2FA1L443 756 aa26.36■■□□□ 1.81
VPS33A-205ENST00000541169 HSPA1LP34931 641 aa26.36■■□□□ 1.81
VPS33A-205ENST00000541169 PHF8Q9UPP1 1060 aa26.36■■□□□ 1.81
VPS33A-205ENST00000541169 ATP7BP35670 1465 aa26.36■■□□□ 1.81
VPS33A-205ENST00000541169 RGPD8O14715 1765 aaPredicted RBP26.35■■□□□ 1.81
VPS33A-205ENST00000541169 CDCA8Q53HL2 280 aa26.34■■□□□ 1.81
VPS33A-205ENST00000541169 ATAD2Q6PL18 1390 aa26.33■■□□□ 1.81
VPS33A-205ENST00000541169 ZEB1P37275 1124 aaPredicted RBP26.33■■□□□ 1.81
VPS33A-205ENST00000541169 TESK2Q96S53 571 aa26.33■■□□□ 1.81
VPS33A-205ENST00000541169 TMF1P82094 1093 aa26.31■■□□□ 1.8
VPS33A-205ENST00000541169 LRRC59Q96AG4 307 aaKnown RBP26.31■■□□□ 1.8
VPS33A-205ENST00000541169 PRR36Q9H6K5 1346 aa26.31■■□□□ 1.8
VPS33A-205ENST00000541169 COL16A1Q07092 1604 aaPredicted RBP26.3■■□□□ 1.8
VPS33A-205ENST00000541169 PLEKHG3A1L390 1219 aa26.3■■□□□ 1.8
VPS33A-205ENST00000541169 PSME1Q06323 249 aa26.3■■□□□ 1.8
VPS33A-205ENST00000541169 TOPAZ1Q8N9V7 1692 aa26.3■■□□□ 1.8
VPS33A-205ENST00000541169 SOS2Q07890 1332 aaPredicted RBP26.3■■□□□ 1.8
VPS33A-205ENST00000541169 FOXO3O43524 673 aa26.29■■□□□ 1.8
VPS33A-205ENST00000541169 CABP2Q9NPB3 220 aa26.28■■□□□ 1.8
VPS33A-205ENST00000541169 NINLQ9Y2I6 1382 aa26.26■■□□□ 1.79
VPS33A-205ENST00000541169 NGDNQ8NEJ9 315 aaKnown RBP26.26■■□□□ 1.79
VPS33A-205ENST00000541169 PPIP5K1Q6PFW1 1433 aa26.25■■□□□ 1.79
VPS33A-205ENST00000541169 POLR3AO14802 1390 aaPredicted RBP26.25■■□□□ 1.79
VPS33A-205ENST00000541169 JCADQ9P266 1359 aa26.25■■□□□ 1.79
VPS33A-205ENST00000541169 PXDNQ92626 1479 aa26.24■■□□□ 1.79
VPS33A-205ENST00000541169 BRD4O60885 1362 aaPredicted RBP26.24■■□□□ 1.79
VPS33A-205ENST00000541169 PMFBP1Q8TBY8 1022 aa26.23■■□□□ 1.79
VPS33A-205ENST00000541169 HSPA5P11021 654 aaKnown RBP26.22■■□□□ 1.79
VPS33A-205ENST00000541169 KRT28Q7Z3Y7 464 aa26.22■■□□□ 1.79
VPS33A-205ENST00000541169 SBNO1A3KN83 1393 aa26.21■■□□□ 1.79
VPS33A-205ENST00000541169 ZNF692Q9BU19 519 aaPredicted RBP26.21■■□□□ 1.79
VPS33A-205ENST00000541169 SHPRHQ149N8 1683 aa26.2■■□□□ 1.78
VPS33A-205ENST00000541169 ACEP12821 1306 aa26.19■■□□□ 1.78
VPS33A-205ENST00000541169 CABP1Q9NZU7 370 aa26.19■■□□□ 1.78
VPS33A-205ENST00000541169 SPATA31A6Q5VVP1 1343 aa26.18■■□□□ 1.78
VPS33A-205ENST00000541169 DDX17Q92841 729 aaKnown RBP26.18■■□□□ 1.78
VPS33A-205ENST00000541169 ARHGEF10O15013 1369 aa26.16■■□□□ 1.78
VPS33A-205ENST00000541169 DISP3Q9P2K9 1392 aa26.16■■□□□ 1.78
VPS33A-205ENST00000541169 SPATA31A3Q5VYP0 1347 aa26.15■■□□□ 1.78
VPS33A-205ENST00000541169 TERF2IPQ9NYB0 399 aa26.15■■□□□ 1.78
VPS33A-205ENST00000541169 TNS3Q68CZ2 1445 aa26.14■■□□□ 1.77
VPS33A-205ENST00000541169 PNPLA6Q8IY17 1366 aa26.12■■□□□ 1.77
VPS33A-205ENST00000541169 XPCQ01831 940 aaPredicted RBP26.12■■□□□ 1.77
VPS33A-205ENST00000541169 HDGFL2Q7Z4V5 671 aaPredicted RBP26.12■■□□□ 1.77
VPS33A-205ENST00000541169 TMC1Q8TDI8 760 aa26.12■■□□□ 1.77
VPS33A-205ENST00000541169 TRPM3Q9HCF6 1732 aaPredicted RBP26.11■■□□□ 1.77
VPS33A-205ENST00000541169 COL22A1Q8NFW1 1626 aaPredicted RBP26.11■■□□□ 1.77
VPS33A-205ENST00000541169 CPSF1Q10570 1443 aaKnown RBP26.11■■□□□ 1.77
VPS33A-205ENST00000541169 AKAP12Q02952 1782 aa26.1■■□□□ 1.77
VPS33A-205ENST00000541169 USP6P35125 1406 aa26.09■■□□□ 1.77
VPS33A-205ENST00000541169 PAK3O75914 559 aaPredicted RBP26.07■■□□□ 1.76
VPS33A-205ENST00000541169 SLC12A5Q9H2X9 1139 aa26.07■■□□□ 1.76
VPS33A-205ENST00000541169 KTN1Q86UP2 1357 aaKnown RBP26.07■■□□□ 1.76
VPS33A-205ENST00000541169 ALS2Q96Q42 1657 aa26.06■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms