RNA–Protein interactions for RNA: ENST00000540998.5

CDC42SE1-207, Transcript of CDC42 small effector 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CDC42SE1, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-207ENST00000540998 RUNDC1Q96C34 613 aa13.24□□□□□ -0.29
CDC42SE1-207ENST00000540998 PTPRTO14522 1441 aa13.24□□□□□ -0.29
CDC42SE1-207ENST00000540998 NOS1P29475 1434 aa13.23□□□□□ -0.29
CDC42SE1-207ENST00000540998 TBC1D32Q96NH3 1257 aa13.23□□□□□ -0.29
CDC42SE1-207ENST00000540998 BECN1Q14457 450 aa13.23□□□□□ -0.29
CDC42SE1-207ENST00000540998 NPC1L1Q9UHC9 1359 aa13.23□□□□□ -0.29
CDC42SE1-207ENST00000540998 U2SURPO15042 1029 aaKnown RBP13.22□□□□□ -0.29
CDC42SE1-207ENST00000540998 ZFYVE16Q7Z3T8 1539 aa13.22□□□□□ -0.29
CDC42SE1-207ENST00000540998 CABP2Q9NPB3 220 aa13.22□□□□□ -0.29
CDC42SE1-207ENST00000540998 VIRMAQ69YN4 1812 aaKnown RBP13.22□□□□□ -0.29
CDC42SE1-207ENST00000540998 ZCCHC11Q5TAX3 1644 aaKnown RBP13.21□□□□□ -0.29
CDC42SE1-207ENST00000540998 FBLN1P23142 703 aa13.21□□□□□ -0.29
CDC42SE1-207ENST00000540998 GGT6Q6P531 493 aa13.21□□□□□ -0.29
CDC42SE1-207ENST00000540998 FTSJ3Q8IY81 847 aaKnown RBP13.21□□□□□ -0.29
CDC42SE1-207ENST00000540998 POLR3AO14802 1390 aaPredicted RBP13.21□□□□□ -0.3
CDC42SE1-207ENST00000540998 SHPRHQ149N8 1683 aa13.21□□□□□ -0.3
CDC42SE1-207ENST00000540998 EXOSC9Q06265 439 aaKnown RBP13.2□□□□□ -0.3
CDC42SE1-207ENST00000540998 ITPRIPQ8IWB1 547 aa13.2□□□□□ -0.3
CDC42SE1-207ENST00000540998 GGNBP2Q9H3C7 697 aa13.2□□□□□ -0.3
CDC42SE1-207ENST00000540998 SMC4Q9NTJ3 1288 aa13.2□□□□□ -0.3
CDC42SE1-207ENST00000540998 STK26Q9P289 416 aa13.2□□□□□ -0.3
CDC42SE1-207ENST00000540998 KANK1Q14678 1352 aa13.19□□□□□ -0.3
CDC42SE1-207ENST00000540998 MROH2AA6NES4 1674 aa13.19□□□□□ -0.3
CDC42SE1-207ENST00000540998 PMFBP1Q8TBY8 1022 aa13.19□□□□□ -0.3
CDC42SE1-207ENST00000540998 UPF2Q9HAU5 1272 aaKnown RBP13.19□□□□□ -0.3
CDC42SE1-207ENST00000540998 FOXD4L1Q9NU39 408 aa13.19□□□□□ -0.3
CDC42SE1-207ENST00000540998 MVPQ14764 893 aaKnown RBP13.18□□□□□ -0.3
CDC42SE1-207ENST00000540998 MAP3K4Q9Y6R4 1608 aa13.18□□□□□ -0.3
CDC42SE1-207ENST00000540998 TRIM27P14373 513 aa13.18□□□□□ -0.3
CDC42SE1-207ENST00000540998 SSH1Q8WYL5 1049 aa13.18□□□□□ -0.3
CDC42SE1-207ENST00000540998 RWDD1Q9H446 243 aaPredicted RBP13.17□□□□□ -0.3
CDC42SE1-207ENST00000540998 XRCC6P12956 609 aaKnown RBP eCLIP13.17□□□□□ -0.3
CDC42SE1-207ENST00000540998 DZIP1LQ8IYY4 767 aaKnown RBP13.17□□□□□ -0.3
CDC42SE1-207ENST00000540998 PHF23Q9BUL5 403 aaPredicted RBP13.16□□□□□ -0.3
CDC42SE1-207ENST00000540998 C22orf23Q9BZE7 217 aa13.16□□□□□ -0.3
CDC42SE1-207ENST00000540998 IQSEC2Q5JU85 1478 aa13.16□□□□□ -0.3
CDC42SE1-207ENST00000540998 TET3O43151 1660 aa13.16□□□□□ -0.3
CDC42SE1-207ENST00000540998 ZKSCAN2Q63HK3 967 aa13.16□□□□□ -0.3
CDC42SE1-207ENST00000540998 C1orf115Q9H7X2 142 aa13.16□□□□□ -0.3
CDC42SE1-207ENST00000540998 NOB1Q9ULX3 412 aaKnown RBP13.16□□□□□ -0.3
CDC42SE1-207ENST00000540998 FAM43AQ8N2R8 423 aa13.15□□□□□ -0.3
CDC42SE1-207ENST00000540998 LNPKQ9C0E8 428 aa13.15□□□□□ -0.3
CDC42SE1-207ENST00000540998 ATP7AQ04656 1500 aa13.15□□□□□ -0.3
CDC42SE1-207ENST00000540998 FANCAO15360 1455 aa13.15□□□□□ -0.3
CDC42SE1-207ENST00000540998 MCM4P33991 863 aa13.14□□□□□ -0.31
CDC42SE1-207ENST00000540998 TMEM57Q8N5G2 664 aa13.14□□□□□ -0.31
CDC42SE1-207ENST00000540998 WDR63Q8IWG1 891 aa13.14□□□□□ -0.31
CDC42SE1-207ENST00000540998 THUMPD2Q9BTF0 503 aaKnown RBP13.14□□□□□ -0.31
CDC42SE1-207ENST00000540998 CFAP53Q96M91 514 aa13.13□□□□□ -0.31
CDC42SE1-207ENST00000540998 ZNF518AQ6AHZ1 1483 aa13.13□□□□□ -0.31
CDC42SE1-207ENST00000540998 SHROOM2Q13796 1616 aa13.13□□□□□ -0.31
CDC42SE1-207ENST00000540998 RTEL1-TNFRSF6BF6WH68 1400 aa13.13□□□□□ -0.31
CDC42SE1-207ENST00000540998 ELL2O00472 640 aaPredicted RBP13.12□□□□□ -0.31
CDC42SE1-207ENST00000540998 MYH16Q9H6N6 1097 aa13.12□□□□□ -0.31
CDC42SE1-207ENST00000540998 TRIM35Q9UPQ4 493 aa13.12□□□□□ -0.31
CDC42SE1-207ENST00000540998 MROH1Q8NDA8 1641 aa13.12□□□□□ -0.31
CDC42SE1-207ENST00000540998 CD109Q6YHK3 1445 aa13.12□□□□□ -0.31
CDC42SE1-207ENST00000540998 ADGRL1O94910 1474 aa13.12□□□□□ -0.31
CDC42SE1-207ENST00000540998 NINLQ9Y2I6 1382 aa13.11□□□□□ -0.31
CDC42SE1-207ENST00000540998 DEPDC5O75140 1603 aa13.11□□□□□ -0.31
CDC42SE1-207ENST00000540998 PPRC1Q5VV67 1664 aaKnown RBP13.11□□□□□ -0.31
CDC42SE1-207ENST00000540998 TRAK2O60296 914 aa13.11□□□□□ -0.31
CDC42SE1-207ENST00000540998 TMPOP42166 694 aaKnown RBP13.11□□□□□ -0.31
CDC42SE1-207ENST00000540998 SRPK2P78362 688 aaKnown RBP13.11□□□□□ -0.31
CDC42SE1-207ENST00000540998 KIF1BO60333 1816 aa13.11□□□□□ -0.31
CDC42SE1-207ENST00000540998 GOLGA6L3A6NEY3 463 aa13.1□□□□□ -0.31
CDC42SE1-207ENST00000540998 CD2BP2O95400 341 aaKnown RBP13.1□□□□□ -0.31
CDC42SE1-207ENST00000540998 RBM42Q9BTD8 480 aaKnown RBP13.1□□□□□ -0.31
CDC42SE1-207ENST00000540998 C14orf93Q9H972 538 aaKnown RBP13.1□□□□□ -0.31
CDC42SE1-207ENST00000540998 QRICH2Q9H0J4 1663 aa13.1□□□□□ -0.31
CDC42SE1-207ENST00000540998 MYOM2P54296 1465 aa13.1□□□□□ -0.31
CDC42SE1-207ENST00000540998 MINK1Q8N4C8 1332 aaPredicted RBP13.1□□□□□ -0.31
CDC42SE1-207ENST00000540998 STAC3Q96MF2 364 aa13.1□□□□□ -0.31
CDC42SE1-207ENST00000540998 RIPK4P57078 832 aa13.09□□□□□ -0.31
CDC42SE1-207ENST00000540998 ATF7IPQ6VMQ6 1270 aa13.09□□□□□ -0.31
CDC42SE1-207ENST00000540998 KIAA1210Q9ULL0 1709 aa13.08□□□□□ -0.31
CDC42SE1-207ENST00000540998 NGEFQ8N5V2 710 aa13.08□□□□□ -0.32
CDC42SE1-207ENST00000540998 VWDEQ8N2E2 1590 aa13.08□□□□□ -0.32
CDC42SE1-207ENST00000540998 PLEKHF1Q96S99 279 aa13.08□□□□□ -0.32
CDC42SE1-207ENST00000540998 INO80Q9ULG1 1556 aaPredicted RBP13.07□□□□□ -0.32
CDC42SE1-207ENST00000540998 NPATQ14207 1427 aa13.07□□□□□ -0.32
CDC42SE1-207ENST00000540998 EFCAB6Q5THR3 1501 aa13.07□□□□□ -0.32
CDC42SE1-207ENST00000540998 A0A1W2PP64 1363 aa13.07□□□□□ -0.32
CDC42SE1-207ENST00000540998 HMOX1P09601 288 aa13.06□□□□□ -0.32
CDC42SE1-207ENST00000540998 ZNF692Q9BU19 519 aaPredicted RBP13.06□□□□□ -0.32
CDC42SE1-207ENST00000540998 CHMP5Q9NZZ3 219 aa13.06□□□□□ -0.32
CDC42SE1-207ENST00000540998 CCDC27Q2M243 656 aa13.06□□□□□ -0.32
CDC42SE1-207ENST00000540998 L1TD1Q5T7N2 865 aaKnown RBP13.06□□□□□ -0.32
CDC42SE1-207ENST00000540998 HSCBQ8IWL3 235 aa13.06□□□□□ -0.32
CDC42SE1-207ENST00000540998 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.06□□□□□ -0.32
CDC42SE1-207ENST00000540998 NAP1L5Q96NT1 182 aaPredicted RBP13.06□□□□□ -0.32
CDC42SE1-207ENST00000540998 TULP4Q9NRJ4 1543 aa13.06□□□□□ -0.32
CDC42SE1-207ENST00000540998 IFT172Q9UG01 1749 aa13.06□□□□□ -0.32
CDC42SE1-207ENST00000540998 ATAD2Q6PL18 1390 aa13.06□□□□□ -0.32
CDC42SE1-207ENST00000540998 ADGRB1O14514 1584 aa13.05□□□□□ -0.32
CDC42SE1-207ENST00000540998 SBNO2Q9Y2G9 1366 aa13.05□□□□□ -0.32
CDC42SE1-207ENST00000540998 FSD2A1L4K1 749 aa13.05□□□□□ -0.32
CDC42SE1-207ENST00000540998 GAS2L3Q86XJ1 694 aa13.05□□□□□ -0.32
CDC42SE1-207ENST00000540998 ZBTB40Q9NUA8 1239 aa13.05□□□□□ -0.32
CDC42SE1-207ENST00000540998 EVC2Q86UK5 1308 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms