RNA–Protein interactions for RNA: ENST00000540663.5

SYNE1-238, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 776 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-238ENST00000540663 TRIM26Q12899 539 aaPredicted RBP17.16■□□□□ 0.34
SYNE1-238ENST00000540663 WAPLQ7Z5K2 1190 aa17.16■□□□□ 0.34
SYNE1-238ENST00000540663 PHF23Q9BUL5 403 aaPredicted RBP17.16■□□□□ 0.34
SYNE1-238ENST00000540663 PLEKHH1Q9ULM0 1364 aa17.15■□□□□ 0.34
SYNE1-238ENST00000540663 SHPRHQ149N8 1683 aa17.14■□□□□ 0.33
SYNE1-238ENST00000540663 SPATA31A6Q5VVP1 1343 aa17.14■□□□□ 0.33
SYNE1-238ENST00000540663 KIAA1210Q9ULL0 1709 aa17.11■□□□□ 0.33
SYNE1-238ENST00000540663 ILDR2Q71H61 639 aa17.11■□□□□ 0.33
SYNE1-238ENST00000540663 LRRC59Q96AG4 307 aaKnown RBP17.11■□□□□ 0.33
SYNE1-238ENST00000540663 PRAM1Q96QH2 718 aa17.11■□□□□ 0.33
SYNE1-238ENST00000540663 FMN2Q9NZ56 1722 aa17.1■□□□□ 0.33
SYNE1-238ENST00000540663 ORAI2Q96SN7 254 aa17.1■□□□□ 0.33
SYNE1-238ENST00000540663 POGKQ9P215 609 aa17.1■□□□□ 0.33
SYNE1-238ENST00000540663 ADGRB2O60241 1585 aa17.09■□□□□ 0.33
SYNE1-238ENST00000540663 TRAK1Q9UPV9 953 aa17.08■□□□□ 0.32
SYNE1-238ENST00000540663 SOS2Q07890 1332 aaPredicted RBP17.07■□□□□ 0.32
SYNE1-238ENST00000540663 NPHP3Q7Z494 1330 aa17.07■□□□□ 0.32
SYNE1-238ENST00000540663 ESCO1Q5FWF5 840 aa17.07■□□□□ 0.32
SYNE1-238ENST00000540663 DDX17Q92841 729 aaKnown RBP17.06■□□□□ 0.32
SYNE1-238ENST00000540663 KIF1AQ12756 1690 aa17.06■□□□□ 0.32
SYNE1-238ENST00000540663 EIF3AQ14152 1382 aaKnown RBP17.05■□□□□ 0.32
SYNE1-238ENST00000540663 SAFB2Q14151 953 aaKnown RBP eCLIP17.05■□□□□ 0.32
SYNE1-238ENST00000540663 ANKARQ7Z5J8 1434 aa17.04■□□□□ 0.32
SYNE1-238ENST00000540663 PNPLA6Q8IY17 1366 aa17.04■□□□□ 0.32
SYNE1-238ENST00000540663 LRP6O75581 1613 aa17.04■□□□□ 0.32
SYNE1-238ENST00000540663 L3MBTL2Q969R5 705 aa17.04■□□□□ 0.32
SYNE1-238ENST00000540663 ARHGEF28Q8N1W1 1705 aaKnown RBP17.04■□□□□ 0.32
SYNE1-238ENST00000540663 SIN3AQ96ST3 1273 aa17.03■□□□□ 0.32
SYNE1-238ENST00000540663 PXDNQ92626 1479 aa17.03■□□□□ 0.32
SYNE1-238ENST00000540663 NUTM2FA1L443 756 aa17.02■□□□□ 0.32
SYNE1-238ENST00000540663 SOCS7O14512 581 aa17.02■□□□□ 0.32
SYNE1-238ENST00000540663 MEX3CQ5U5Q3 659 aaKnown RBP17.02■□□□□ 0.32
SYNE1-238ENST00000540663 RGS17Q9UGC6 210 aaPredicted RBP17.02■□□□□ 0.32
SYNE1-238ENST00000540663 NEUROD1Q13562 356 aa17.01■□□□□ 0.31
SYNE1-238ENST00000540663 FOXO3O43524 673 aa17■□□□□ 0.31
SYNE1-238ENST00000540663 MINK1Q8N4C8 1332 aaPredicted RBP16.99■□□□□ 0.31
SYNE1-238ENST00000540663 PHF8Q9UPP1 1060 aa16.99■□□□□ 0.31
SYNE1-238ENST00000540663 TULP4Q9NRJ4 1543 aa16.99■□□□□ 0.31
SYNE1-238ENST00000540663 COL22A1Q8NFW1 1626 aaPredicted RBP16.99■□□□□ 0.31
SYNE1-238ENST00000540663 NUTM2BA6NNL0 878 aaPredicted RBP16.98■□□□□ 0.31
SYNE1-238ENST00000540663 NUTM2EB1AL46 878 aaPredicted RBP16.98■□□□□ 0.31
SYNE1-238ENST00000540663 WASLO00401 505 aaPredicted RBP16.98■□□□□ 0.31
SYNE1-238ENST00000540663 NBPF1Q3BBV0 1214 aa16.98■□□□□ 0.31
SYNE1-238ENST00000540663 NUTM2AQ8IVF1 878 aaPredicted RBP16.98■□□□□ 0.31
SYNE1-238ENST00000540663 HIRIP3Q9BW71 556 aaPredicted RBP16.98■□□□□ 0.31
SYNE1-238ENST00000540663 USP32Q8NFA0 1604 aa16.97■□□□□ 0.31
SYNE1-238ENST00000540663 RGPD8O14715 1765 aaPredicted RBP16.97■□□□□ 0.31
SYNE1-238ENST00000540663 TRPM1Q7Z4N2 1603 aa16.96■□□□□ 0.31
SYNE1-238ENST00000540663 ZNF772Q68DY9 489 aaPredicted RBP16.96■□□□□ 0.31
SYNE1-238ENST00000540663 PSME1Q06323 249 aa16.95■□□□□ 0.3
SYNE1-238ENST00000540663 POTEAQ6S8J7 498 aa16.95■□□□□ 0.3
SYNE1-238ENST00000540663 XPCQ01831 940 aaPredicted RBP16.94■□□□□ 0.3
SYNE1-238ENST00000540663 KRT28Q7Z3Y7 464 aa16.94■□□□□ 0.3
SYNE1-238ENST00000540663 SPATA31A3Q5VYP0 1347 aa16.94■□□□□ 0.3
SYNE1-238ENST00000540663 CENPJQ9HC77 1338 aaPredicted RBP16.94■□□□□ 0.3
SYNE1-238ENST00000540663 SBNO1A3KN83 1393 aa16.93■□□□□ 0.3
SYNE1-238ENST00000540663 TONSLQ96HA7 1378 aa16.93■□□□□ 0.3
SYNE1-238ENST00000540663 PRR36Q9H6K5 1346 aa16.93■□□□□ 0.3
SYNE1-238ENST00000540663 ROCK2O75116 1388 aaKnown RBP16.92■□□□□ 0.3
SYNE1-238ENST00000540663 TNS3Q68CZ2 1445 aa16.92■□□□□ 0.3
SYNE1-238ENST00000540663 ITSN1Q15811 1721 aa16.92■□□□□ 0.3
SYNE1-238ENST00000540663 ATP7BP35670 1465 aa16.92■□□□□ 0.3
SYNE1-238ENST00000540663 AFF2P51816 1311 aa16.91■□□□□ 0.3
SYNE1-238ENST00000540663 ARHGEF10O15013 1369 aa16.9■□□□□ 0.3
SYNE1-238ENST00000540663 GPRASP1Q5JY77 1395 aa16.9■□□□□ 0.3
SYNE1-238ENST00000540663 C8orf37Q96NL8 207 aa16.9■□□□□ 0.3
SYNE1-238ENST00000540663 CDK19Q9BWU1 502 aa16.9■□□□□ 0.3
SYNE1-238ENST00000540663 ADAMTS2O95450 1211 aa16.89■□□□□ 0.29
SYNE1-238ENST00000540663 PMFBP1Q8TBY8 1022 aa16.89■□□□□ 0.29
SYNE1-238ENST00000540663 NUDT16Q96DE0 195 aaKnown RBP16.89■□□□□ 0.29
SYNE1-238ENST00000540663 QRICH2Q9H0J4 1663 aa16.88■□□□□ 0.29
SYNE1-238ENST00000540663 NBPF8Q3BBV2 869 aa16.87■□□□□ 0.29
SYNE1-238ENST00000540663 NGDNQ8NEJ9 315 aaKnown RBP16.87■□□□□ 0.29
SYNE1-238ENST00000540663 NGLY1Q96IV0 654 aa16.87■□□□□ 0.29
SYNE1-238ENST00000540663 TOPAZ1Q8N9V7 1692 aa16.87■□□□□ 0.29
SYNE1-238ENST00000540663 RALGAPBQ86X10 1494 aa16.86■□□□□ 0.29
SYNE1-238ENST00000540663 CCDC61Q9Y6R9 512 aa16.86■□□□□ 0.29
SYNE1-238ENST00000540663 TRPM3Q9HCF6 1732 aaPredicted RBP16.86■□□□□ 0.29
SYNE1-238ENST00000540663 MARF1Q9Y4F3 1742 aaKnown RBP16.85■□□□□ 0.29
SYNE1-238ENST00000540663 PLEKHG3A1L390 1219 aa16.84■□□□□ 0.29
SYNE1-238ENST00000540663 RXRBP28702 533 aa16.84■□□□□ 0.29
SYNE1-238ENST00000540663 FNBP4Q8N3X1 1017 aaPredicted RBP16.84■□□□□ 0.29
SYNE1-238ENST00000540663 CLSPNQ9HAW4 1339 aa16.84■□□□□ 0.29
SYNE1-238ENST00000540663 POLR3AO14802 1390 aaPredicted RBP16.84■□□□□ 0.29
SYNE1-238ENST00000540663 CDK12Q9NYV4 1490 aaPredicted RBP16.84■□□□□ 0.29
SYNE1-238ENST00000540663 SRPK2P78362 688 aaKnown RBP16.83■□□□□ 0.28
SYNE1-238ENST00000540663 EVC2Q86UK5 1308 aa16.83■□□□□ 0.28
SYNE1-238ENST00000540663 ALS2Q96Q42 1657 aa16.83■□□□□ 0.28
SYNE1-238ENST00000540663 LMOD2Q6P5Q4 547 aa16.82■□□□□ 0.28
SYNE1-238ENST00000540663 QTRT2Q9H974 415 aaKnown RBP16.82■□□□□ 0.28
SYNE1-238ENST00000540663 SBNO2Q9Y2G9 1366 aa16.81■□□□□ 0.28
SYNE1-238ENST00000540663 HAP1P54257 671 aaPredicted RBP16.81■□□□□ 0.28
SYNE1-238ENST00000540663 CARD11Q9BXL7 1154 aa16.81■□□□□ 0.28
SYNE1-238ENST00000540663 USP21Q9UK80 565 aa16.81■□□□□ 0.28
SYNE1-238ENST00000540663 ACEP12821 1306 aa16.8■□□□□ 0.28
SYNE1-238ENST00000540663 ABCA3Q99758 1704 aa16.8■□□□□ 0.28
SYNE1-238ENST00000540663 RBM6P78332 1123 aaKnown RBP16.8■□□□□ 0.28
SYNE1-238ENST00000540663 PPIP5K1Q6PFW1 1433 aa16.79■□□□□ 0.28
SYNE1-238ENST00000540663 BRD4O60885 1362 aaPredicted RBP16.79■□□□□ 0.28
SYNE1-238ENST00000540663 PCGF6Q9BYE7 350 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms