RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 KIF2AO00139 706 aaPredicted RBP10.49□□□□□ -0.73
YBX3-208ENST00000540447 RTF1Q92541 710 aaKnown RBP10.49□□□□□ -0.73
YBX3-208ENST00000540447 CIZ1Q9ULV3 898 aaPredicted RBP10.49□□□□□ -0.73
YBX3-208ENST00000540447 IGSF3O75054 1194 aa10.49□□□□□ -0.73
YBX3-208ENST00000540447 MPHOSPH10O00566 681 aaKnown RBP10.48□□□□□ -0.73
YBX3-208ENST00000540447 IVLP07476 585 aa10.48□□□□□ -0.73
YBX3-208ENST00000540447 CLASRPQ8N2M8 674 aaKnown RBP10.48□□□□□ -0.73
YBX3-208ENST00000540447 KIF15Q9NS87 1388 aa10.48□□□□□ -0.73
YBX3-208ENST00000540447 PTPN14Q15678 1187 aa10.48□□□□□ -0.73
YBX3-208ENST00000540447 ZKSCAN2Q63HK3 967 aa10.48□□□□□ -0.73
YBX3-208ENST00000540447 SLC26A8Q96RN1 970 aa10.48□□□□□ -0.73
YBX3-208ENST00000540447 GBP3Q9H0R5 595 aa10.48□□□□□ -0.73
YBX3-208ENST00000540447 RAB3GAP2Q9H2M9 1393 aa10.48□□□□□ -0.73
YBX3-208ENST00000540447 RNF187Q5TA31 235 aaPredicted RBP10.47□□□□□ -0.73
YBX3-208ENST00000540447 INTS3Q68E01 1043 aaKnown RBP10.47□□□□□ -0.73
YBX3-208ENST00000540447 C10orf67Q8IYJ2 551 aa10.47□□□□□ -0.73
YBX3-208ENST00000540447 KIF18AQ8NI77 898 aa10.47□□□□□ -0.73
YBX3-208ENST00000540447 ROCK2O75116 1388 aaKnown RBP10.47□□□□□ -0.73
YBX3-208ENST00000540447 U2AF1L5P0DN76 240 aaPredicted RBP10.47□□□□□ -0.73
YBX3-208ENST00000540447 U2AF1Q01081 240 aaKnown RBP eCLIP10.47□□□□□ -0.733e-16■■□□□ 13.9
YBX3-208ENST00000540447 DCAF11Q8TEB1 546 aa10.47□□□□□ -0.73
YBX3-208ENST00000540447 OLFM4Q6UX06 510 aa10.46□□□□□ -0.73
YBX3-208ENST00000540447 FAM177A1Q8N128 213 aaPredicted RBP10.46□□□□□ -0.73
YBX3-208ENST00000540447 RBM33Q96EV2 1170 aaKnown RBP10.46□□□□□ -0.73
YBX3-208ENST00000540447 ENOX2Q16206 610 aaKnown RBP10.46□□□□□ -0.73
YBX3-208ENST00000540447 CWC22Q9HCG8 908 aaKnown RBP10.46□□□□□ -0.73
YBX3-208ENST00000540447 BCL2L13Q9BXK5 485 aa10.46□□□□□ -0.74
YBX3-208ENST00000540447 A0A1B0GUL7 405 aa10.45□□□□□ -0.74
YBX3-208ENST00000540447 EIF3AQ14152 1382 aaKnown RBP10.45□□□□□ -0.74
YBX3-208ENST00000540447 OFD1O75665 1012 aa10.45□□□□□ -0.74
YBX3-208ENST00000540447 SETSIPP0DME0 302 aa10.45□□□□□ -0.74
YBX3-208ENST00000540447 ODF2Q5BJF6 829 aa10.45□□□□□ -0.74
YBX3-208ENST00000540447 XRCC6P12956 609 aaKnown RBP eCLIP10.45□□□□□ -0.74
YBX3-208ENST00000540447 CRACR2AQ9BSW2 395 aa10.45□□□□□ -0.74
YBX3-208ENST00000540447 SYCE3A1L190 88 aa10.45□□□□□ -0.74
YBX3-208ENST00000540447 SDF4Q9BRK5 362 aa10.45□□□□□ -0.74
YBX3-208ENST00000540447 GOLIM4O00461 696 aa10.45□□□□□ -0.74
YBX3-208ENST00000540447 MYCBPQ99417 103 aaPredicted RBP10.44□□□□□ -0.74
YBX3-208ENST00000540447 ZNF622Q969S3 477 aaKnown RBP eCLIP10.44□□□□□ -0.742e-15■□□□□ 9.4
YBX3-208ENST00000540447 GBP6Q6ZN66 633 aa10.44□□□□□ -0.74
YBX3-208ENST00000540447 MICALL1Q8N3F8 863 aa10.44□□□□□ -0.74
YBX3-208ENST00000540447 SMARCE1Q969G3 411 aa10.44□□□□□ -0.74
YBX3-208ENST00000540447 DDX19BQ9UMR2 479 aa10.44□□□□□ -0.74
YBX3-208ENST00000540447 PRM3Q9NNZ6 103 aa10.44□□□□□ -0.74
YBX3-208ENST00000540447 RRAGDQ9NQL2 400 aaPredicted RBP10.44□□□□□ -0.74
YBX3-208ENST00000540447 K7ELQ4 463 aaPredicted RBP10.44□□□□□ -0.74
YBX3-208ENST00000540447 CCDC27Q2M243 656 aa10.44□□□□□ -0.74
YBX3-208ENST00000540447 ANO2Q9NQ90 1003 aa10.44□□□□□ -0.74
YBX3-208ENST00000540447 OGFRQ9NZT2 677 aa10.44□□□□□ -0.74
YBX3-208ENST00000540447 WASHC2AQ641Q2 1341 aa10.43□□□□□ -0.74
YBX3-208ENST00000540447 DRC1Q96MC2 740 aa10.43□□□□□ -0.74
YBX3-208ENST00000540447 RSPH14Q9UHP6 348 aa10.43□□□□□ -0.74
YBX3-208ENST00000540447 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.43□□□□□ -0.74
YBX3-208ENST00000540447 FBLN2P98095 1184 aa10.43□□□□□ -0.74
YBX3-208ENST00000540447 DHX57Q6P158 1386 aaKnown RBP10.43□□□□□ -0.74
YBX3-208ENST00000540447 LIG1P18858 919 aa10.43□□□□□ -0.74
YBX3-208ENST00000540447 CDC45O75419 566 aa10.43□□□□□ -0.74
YBX3-208ENST00000540447 RABEP1Q15276 862 aa10.43□□□□□ -0.74
YBX3-208ENST00000540447 FIBPO43427 364 aa10.43□□□□□ -0.74
YBX3-208ENST00000540447 ZKSCAN1P17029 563 aaPredicted RBP10.43□□□□□ -0.74
YBX3-208ENST00000540447 FEZ1Q99689 392 aa10.42□□□□□ -0.74
YBX3-208ENST00000540447 MRVI1Q9Y6F6 885 aa10.42□□□□□ -0.74
YBX3-208ENST00000540447 LUZP1Q86V48 1076 aa10.42□□□□□ -0.74
YBX3-208ENST00000540447 C16orf45Q96MC5 204 aaPredicted RBP10.42□□□□□ -0.74
YBX3-208ENST00000540447 FMNL2Q96PY5 1086 aa10.42□□□□□ -0.74
YBX3-208ENST00000540447 EZRP15311 586 aaKnown RBP10.42□□□□□ -0.74
YBX3-208ENST00000540447 KINO60870 393 aaKnown RBP10.42□□□□□ -0.74
YBX3-208ENST00000540447 LNPKQ9C0E8 428 aa10.42□□□□□ -0.74
YBX3-208ENST00000540447 WASHC2CQ9Y4E1 1318 aa10.42□□□□□ -0.74
YBX3-208ENST00000540447 ERLIN2O94905 339 aa10.41□□□□□ -0.74
YBX3-208ENST00000540447 SMARCC1Q92922 1105 aaPredicted RBP10.41□□□□□ -0.74
YBX3-208ENST00000540447 TNMDQ9H2S6 317 aa10.41□□□□□ -0.74
YBX3-208ENST00000540447 JAKMIP3Q5VZ66 844 aa10.41□□□□□ -0.74
YBX3-208ENST00000540447 KIF7Q2M1P5 1343 aa10.41□□□□□ -0.74
YBX3-208ENST00000540447 PANK2Q9BZ23 570 aa10.41□□□□□ -0.74
YBX3-208ENST00000540447 FBXO3Q9UK99 471 aa10.41□□□□□ -0.74
YBX3-208ENST00000540447 GOLGA6L10A0A0M3HER8 536 aa10.41□□□□□ -0.74
YBX3-208ENST00000540447 MAP9Q49MG5 647 aa10.41□□□□□ -0.74
YBX3-208ENST00000540447 LRCH2Q5VUJ6 765 aa10.41□□□□□ -0.74
YBX3-208ENST00000540447 MCM2P49736 904 aa10.41□□□□□ -0.74
YBX3-208ENST00000540447 PAXBP1Q9Y5B6 917 aa10.41□□□□□ -0.74
YBX3-208ENST00000540447 AKNAQ7Z591 1439 aa10.4□□□□□ -0.74
YBX3-208ENST00000540447 RUFY2Q8WXA3 655 aa10.4□□□□□ -0.74
YBX3-208ENST00000540447 CEP164Q9UPV0 1460 aa10.4□□□□□ -0.74
YBX3-208ENST00000540447 IQCEQ6IPM2 695 aa10.4□□□□□ -0.74
YBX3-208ENST00000540447 SLC4A10Q6U841 1118 aa10.4□□□□□ -0.74
YBX3-208ENST00000540447 TAX1BP1Q86VP1 789 aa10.4□□□□□ -0.74
YBX3-208ENST00000540447 URI1O94763 535 aaPredicted RBP10.4□□□□□ -0.75
YBX3-208ENST00000540447 SERPINC1P01008 464 aa10.4□□□□□ -0.75
YBX3-208ENST00000540447 DZIP1LQ8IYY4 767 aaKnown RBP10.4□□□□□ -0.75
YBX3-208ENST00000540447 TMX1Q9H3N1 280 aa10.39□□□□□ -0.75
YBX3-208ENST00000540447 CCDC181Q5TID7 509 aa10.39□□□□□ -0.75
YBX3-208ENST00000540447 CERS3Q8IU89 383 aa10.39□□□□□ -0.75
YBX3-208ENST00000540447 WDR66Q8TBY9 1149 aa10.39□□□□□ -0.75
YBX3-208ENST00000540447 CCDC47Q96A33 483 aaKnown RBP10.39□□□□□ -0.75
YBX3-208ENST00000540447 CFAP45Q9UL16 551 aa10.39□□□□□ -0.75
YBX3-208ENST00000540447 A0A1B0GUA9 196 aa10.39□□□□□ -0.75
YBX3-208ENST00000540447 FILIP1LQ4L180 1135 aa10.39□□□□□ -0.75
YBX3-208ENST00000540447 LRRFIP2Q9Y608 721 aaKnown RBP10.39□□□□□ -0.75
YBX3-208ENST00000540447 CEP57Q86XR8 500 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms