RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 CDC42BPGQ6DT37 1551 aa17.95■□□□□ 0.46
CBX3P4-202ENST00000540428 ACIN1Q9UKV3 1341 aaKnown RBP17.95■□□□□ 0.46
CBX3P4-202ENST00000540428 NGLY1Q96IV0 654 aa17.94■□□□□ 0.46
CBX3P4-202ENST00000540428 MPHOSPH9Q99550 1183 aa17.94■□□□□ 0.46
CBX3P4-202ENST00000540428 NPHP3Q7Z494 1330 aa17.94■□□□□ 0.46
CBX3P4-202ENST00000540428 ADAMTS2O95450 1211 aa17.93■□□□□ 0.46
CBX3P4-202ENST00000540428 LRPPRCP42704 1394 aaKnown RBP17.92■□□□□ 0.46
CBX3P4-202ENST00000540428 ABCC11Q96J66 1382 aa17.92■□□□□ 0.46
CBX3P4-202ENST00000540428 RGS12O14924 1447 aa17.92■□□□□ 0.46
CBX3P4-202ENST00000540428 RGL3Q3MIN7 710 aa17.92■□□□□ 0.46
CBX3P4-202ENST00000540428 ESCO1Q5FWF5 840 aa17.91■□□□□ 0.46
CBX3P4-202ENST00000540428 FNBP4Q8N3X1 1017 aaPredicted RBP17.9■□□□□ 0.46
CBX3P4-202ENST00000540428 PIK3C2GO75747 1445 aa17.89■□□□□ 0.46
CBX3P4-202ENST00000540428 USP21Q9UK80 565 aa17.89■□□□□ 0.45
CBX3P4-202ENST00000540428 COL22A1Q8NFW1 1626 aaPredicted RBP17.89■□□□□ 0.45
CBX3P4-202ENST00000540428 STK26Q9P289 416 aa17.88■□□□□ 0.45
CBX3P4-202ENST00000540428 TRPC5Q9UL62 973 aaPredicted RBP17.88■□□□□ 0.45
CBX3P4-202ENST00000540428 MYOM2P54296 1465 aa17.88■□□□□ 0.45
CBX3P4-202ENST00000540428 WAPLQ7Z5K2 1190 aa17.87■□□□□ 0.45
CBX3P4-202ENST00000540428 SIRT1Q96EB6 747 aa17.87■□□□□ 0.45
CBX3P4-202ENST00000540428 PXDNQ92626 1479 aa17.87■□□□□ 0.45
CBX3P4-202ENST00000540428 FOXO3O43524 673 aa17.86■□□□□ 0.45
CBX3P4-202ENST00000540428 IFT172Q9UG01 1749 aa17.86■□□□□ 0.45
CBX3P4-202ENST00000540428 TMEM132EQ6IEE7 984 aa17.85■□□□□ 0.45
CBX3P4-202ENST00000540428 KNDC1Q76NI1 1749 aa17.85■□□□□ 0.45
CBX3P4-202ENST00000540428 YTHDC2Q9H6S0 1430 aaKnown RBP17.85■□□□□ 0.45
CBX3P4-202ENST00000540428 ATRNO75882 1429 aa17.84■□□□□ 0.45
CBX3P4-202ENST00000540428 PLEKHH1Q9ULM0 1364 aa17.84■□□□□ 0.45
CBX3P4-202ENST00000540428 C14orf93Q9H972 538 aaKnown RBP17.83■□□□□ 0.44
CBX3P4-202ENST00000540428 ATAD2Q6PL18 1390 aa17.82■□□□□ 0.44
CBX3P4-202ENST00000540428 NRXN1Q9ULB1 1477 aa17.82■□□□□ 0.44
CBX3P4-202ENST00000540428 NUTM2FA1L443 756 aa17.81■□□□□ 0.44
CBX3P4-202ENST00000540428 XPCQ01831 940 aaPredicted RBP17.81■□□□□ 0.44
CBX3P4-202ENST00000540428 BCL9LQ86UU0 1499 aa17.8■□□□□ 0.44
CBX3P4-202ENST00000540428 DHX57Q6P158 1386 aaKnown RBP17.79■□□□□ 0.44
CBX3P4-202ENST00000540428 SPATA31A3Q5VYP0 1347 aa17.79■□□□□ 0.44
CBX3P4-202ENST00000540428 FMN2Q9NZ56 1722 aa17.78■□□□□ 0.44
CBX3P4-202ENST00000540428 KIF1AQ12756 1690 aa17.78■□□□□ 0.44
CBX3P4-202ENST00000540428 CFAP70Q5T0N1 1121 aa17.77■□□□□ 0.44
CBX3P4-202ENST00000540428 KRT28Q7Z3Y7 464 aa17.76■□□□□ 0.43
CBX3P4-202ENST00000540428 GJD4Q96KN9 370 aaPredicted RBP17.75■□□□□ 0.43
CBX3P4-202ENST00000540428 PHF8Q9UPP1 1060 aa17.75■□□□□ 0.43
CBX3P4-202ENST00000540428 PSME1Q06323 249 aa17.74■□□□□ 0.43
CBX3P4-202ENST00000540428 SLIT2O94813 1529 aa17.73■□□□□ 0.43
CBX3P4-202ENST00000540428 DLC1Q96QB1 1528 aa17.73■□□□□ 0.43
CBX3P4-202ENST00000540428 MARF1Q9Y4F3 1742 aaKnown RBP17.73■□□□□ 0.43
CBX3P4-202ENST00000540428 CCDC125Q86Z20 511 aa17.73■□□□□ 0.43
CBX3P4-202ENST00000540428 UNC5CLQ8IV45 518 aa17.73■□□□□ 0.43
CBX3P4-202ENST00000540428 PRAM1Q96QH2 718 aa17.73■□□□□ 0.43
CBX3P4-202ENST00000540428 RAB3GAP2Q9H2M9 1393 aa17.73■□□□□ 0.43
CBX3P4-202ENST00000540428 TNS3Q68CZ2 1445 aa17.72■□□□□ 0.43
CBX3P4-202ENST00000540428 SBNO1A3KN83 1393 aa17.72■□□□□ 0.43
CBX3P4-202ENST00000540428 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.71■□□□□ 0.43
CBX3P4-202ENST00000540428 ANKARQ7Z5J8 1434 aa17.71■□□□□ 0.43
CBX3P4-202ENST00000540428 POGKQ9P215 609 aa17.7■□□□□ 0.42
CBX3P4-202ENST00000540428 USP32Q8NFA0 1604 aa17.69■□□□□ 0.42
CBX3P4-202ENST00000540428 ARHGEF10O15013 1369 aa17.69■□□□□ 0.42
CBX3P4-202ENST00000540428 STAC3Q96MF2 364 aa17.69■□□□□ 0.42
CBX3P4-202ENST00000540428 RALGAPBQ86X10 1494 aa17.69■□□□□ 0.42
CBX3P4-202ENST00000540428 ADGRB1O14514 1584 aa17.68■□□□□ 0.42
CBX3P4-202ENST00000540428 HAP1P54257 671 aaPredicted RBP17.68■□□□□ 0.42
CBX3P4-202ENST00000540428 SAFB2Q14151 953 aaKnown RBP eCLIP17.68■□□□□ 0.42
CBX3P4-202ENST00000540428 ADGRB2O60241 1585 aa17.67■□□□□ 0.42
CBX3P4-202ENST00000540428 EIF3AQ14152 1382 aaKnown RBP17.66■□□□□ 0.42
CBX3P4-202ENST00000540428 GLI3P10071 1580 aa17.66■□□□□ 0.42
CBX3P4-202ENST00000540428 HRCP23327 699 aa17.65■□□□□ 0.42
CBX3P4-202ENST00000540428 VPS72Q15906 364 aa17.65■□□□□ 0.42
CBX3P4-202ENST00000540428 CABLES1Q8TDN4 633 aa17.64■□□□□ 0.41
CBX3P4-202ENST00000540428 TRAK1Q9UPV9 953 aa17.64■□□□□ 0.41
CBX3P4-202ENST00000540428 LMOD2Q6P5Q4 547 aa17.63■□□□□ 0.41
CBX3P4-202ENST00000540428 PMFBP1Q8TBY8 1022 aa17.63■□□□□ 0.41
CBX3P4-202ENST00000540428 ZRANB1Q9UGI0 708 aa17.63■□□□□ 0.41
CBX3P4-202ENST00000540428 RGPD8O14715 1765 aaPredicted RBP17.63■□□□□ 0.41
CBX3P4-202ENST00000540428 ONECUT3O60422 494 aaPredicted RBP17.62■□□□□ 0.41
CBX3P4-202ENST00000540428 DCAF11Q8TEB1 546 aa17.62■□□□□ 0.41
CBX3P4-202ENST00000540428 BLMP54132 1417 aaPredicted RBP17.62■□□□□ 0.41
CBX3P4-202ENST00000540428 GPRASP1Q5JY77 1395 aa17.61■□□□□ 0.41
CBX3P4-202ENST00000540428 WASLO00401 505 aaPredicted RBP17.6■□□□□ 0.41
CBX3P4-202ENST00000540428 SEPT12Q8IYM1 358 aa17.6■□□□□ 0.41
CBX3P4-202ENST00000540428 HIRIP3Q9BW71 556 aaPredicted RBP17.6■□□□□ 0.41
CBX3P4-202ENST00000540428 KDM2AQ9Y2K7 1162 aa17.6■□□□□ 0.41
CBX3P4-202ENST00000540428 TULP4Q9NRJ4 1543 aa17.6■□□□□ 0.41
CBX3P4-202ENST00000540428 NWD2Q9ULI1 1742 aa17.6■□□□□ 0.41
CBX3P4-202ENST00000540428 MINK1Q8N4C8 1332 aaPredicted RBP17.59■□□□□ 0.41
CBX3P4-202ENST00000540428 PRR36Q9H6K5 1346 aa17.59■□□□□ 0.41
CBX3P4-202ENST00000540428 FAM83GA6ND36 823 aa17.59■□□□□ 0.41
CBX3P4-202ENST00000540428 EP400Q96L91 3159 aa17.59■□□□□ 0.41
CBX3P4-202ENST00000540428 ABCA3Q99758 1704 aa17.58■□□□□ 0.4
CBX3P4-202ENST00000540428 CCDC9Q9Y3X0 531 aaKnown RBP17.57■□□□□ 0.4
CBX3P4-202ENST00000540428 PLCH1Q4KWH8 1693 aa17.57■□□□□ 0.4
CBX3P4-202ENST00000540428 TRPM3Q9HCF6 1732 aaPredicted RBP17.56■□□□□ 0.4
CBX3P4-202ENST00000540428 PLEKHG5O94827 1062 aa17.56■□□□□ 0.4
CBX3P4-202ENST00000540428 SF3B2Q13435 895 aaKnown RBP17.55■□□□□ 0.4
CBX3P4-202ENST00000540428 KRT27Q7Z3Y8 459 aa17.55■□□□□ 0.4
CBX3P4-202ENST00000540428 NGDNQ8NEJ9 315 aaKnown RBP17.54■□□□□ 0.4
CBX3P4-202ENST00000540428 BTG4Q9NY30 223 aa17.54■□□□□ 0.4
CBX3P4-202ENST00000540428 ALS2Q96Q42 1657 aa17.54■□□□□ 0.4
CBX3P4-202ENST00000540428 ATP7BP35670 1465 aa17.51■□□□□ 0.39
CBX3P4-202ENST00000540428 COL14A1Q05707 1796 aaKnown RBP17.51■□□□□ 0.39
CBX3P4-202ENST00000540428 NRAPQ86VF7 1730 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms