RNA–Protein interactions for RNA: ENST00000540183.1

SEMA4D-222, Transcript of semaphorin 4D, humanhuman

TSL 3

Gene SEMA4D, Length 176 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-222ENST00000540183 RGL3Q3MIN7 710 aa21.39■■□□□ 1.01
SEMA4D-222ENST00000540183 KNDC1Q76NI1 1749 aa21.38■■□□□ 1.01
SEMA4D-222ENST00000540183 MARF1Q9Y4F3 1742 aaKnown RBP21.38■■□□□ 1.01
SEMA4D-222ENST00000540183 CCDC144AA2RUR9 1427 aa21.38■■□□□ 1.01
SEMA4D-222ENST00000540183 SPATA31E1Q6ZUB1 1445 aa21.38■■□□□ 1.01
SEMA4D-222ENST00000540183 STK26Q9P289 416 aa21.37■■□□□ 1.01
SEMA4D-222ENST00000540183 RGPD8O14715 1765 aaPredicted RBP21.36■■□□□ 1.01
SEMA4D-222ENST00000540183 WAPLQ7Z5K2 1190 aa21.36■■□□□ 1.01
SEMA4D-222ENST00000540183 NGLY1Q96IV0 654 aa21.36■■□□□ 1.01
SEMA4D-222ENST00000540183 RBM6P78332 1123 aaKnown RBP21.35■■□□□ 1.01
SEMA4D-222ENST00000540183 PXDNQ92626 1479 aa21.34■■□□□ 1.01
SEMA4D-222ENST00000540183 NUTM2FA1L443 756 aa21.34■■□□□ 1.01
SEMA4D-222ENST00000540183 XPCQ01831 940 aaPredicted RBP21.34■■□□□ 1.01
SEMA4D-222ENST00000540183 ESCO1Q5FWF5 840 aa21.34■■□□□ 1.01
SEMA4D-222ENST00000540183 TMEM132EQ6IEE7 984 aa21.34■■□□□ 1.01
SEMA4D-222ENST00000540183 MPHOSPH9Q99550 1183 aa21.34■■□□□ 1.01
SEMA4D-222ENST00000540183 FMN2Q9NZ56 1722 aa21.34■■□□□ 1.01
SEMA4D-222ENST00000540183 PLEKHH1Q9ULM0 1364 aa21.34■■□□□ 1.01
SEMA4D-222ENST00000540183 TECPR2O15040 1411 aa21.31■■□□□ 1
SEMA4D-222ENST00000540183 LRPPRCP42704 1394 aaKnown RBP21.31■■□□□ 1
SEMA4D-222ENST00000540183 MYOM2P54296 1465 aa21.31■■□□□ 1
SEMA4D-222ENST00000540183 USP21Q9UK80 565 aa21.3■■□□□ 1
SEMA4D-222ENST00000540183 PIK3C2GO75747 1445 aa21.29■■□□□ 1
SEMA4D-222ENST00000540183 ANKRD30BQ9BXX2 1392 aa21.28■■□□□ 1
SEMA4D-222ENST00000540183 FOXO3O43524 673 aa21.28■■□□□ 1
SEMA4D-222ENST00000540183 NPHP3Q7Z494 1330 aa21.28■■□□□ 1
SEMA4D-222ENST00000540183 ABCC11Q96J66 1382 aa21.26■□□□□ 0.99
SEMA4D-222ENST00000540183 ATRNO75882 1429 aa21.26■□□□□ 0.99
SEMA4D-222ENST00000540183 YTHDC2Q9H6S0 1430 aaKnown RBP21.26■□□□□ 0.99
SEMA4D-222ENST00000540183 KIF1AQ12756 1690 aa21.25■□□□□ 0.99
SEMA4D-222ENST00000540183 FNBP4Q8N3X1 1017 aaPredicted RBP21.25■□□□□ 0.99
SEMA4D-222ENST00000540183 TRPC5Q9UL62 973 aaPredicted RBP21.24■□□□□ 0.99
SEMA4D-222ENST00000540183 BCL9LQ86UU0 1499 aa21.23■□□□□ 0.99
SEMA4D-222ENST00000540183 EP400Q96L91 3159 aa21.22■□□□□ 0.99
SEMA4D-222ENST00000540183 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.21■□□□□ 0.99
SEMA4D-222ENST00000540183 NRXN1Q9ULB1 1477 aa21.2■□□□□ 0.98
SEMA4D-222ENST00000540183 CFAP70Q5T0N1 1121 aa21.19■□□□□ 0.98
SEMA4D-222ENST00000540183 BRWD3Q6RI45 1802 aa21.19■□□□□ 0.98
SEMA4D-222ENST00000540183 ATAD2Q6PL18 1390 aa21.19■□□□□ 0.98
SEMA4D-222ENST00000540183 ABCA3Q99758 1704 aa21.18■□□□□ 0.98
SEMA4D-222ENST00000540183 C14orf93Q9H972 538 aaKnown RBP21.18■□□□□ 0.98
SEMA4D-222ENST00000540183 USP32Q8NFA0 1604 aa21.18■□□□□ 0.98
SEMA4D-222ENST00000540183 SPATA31A3Q5VYP0 1347 aa21.17■□□□□ 0.98
SEMA4D-222ENST00000540183 GLI3P10071 1580 aa21.16■□□□□ 0.98
SEMA4D-222ENST00000540183 SAFB2Q14151 953 aaKnown RBP eCLIP21.16■□□□□ 0.98
SEMA4D-222ENST00000540183 PLCH1Q4KWH8 1693 aa21.15■□□□□ 0.98
SEMA4D-222ENST00000540183 KRT28Q7Z3Y7 464 aa21.15■□□□□ 0.98
SEMA4D-222ENST00000540183 PLEKHG5O94827 1062 aa21.14■□□□□ 0.97
SEMA4D-222ENST00000540183 SIRT1Q96EB6 747 aa21.13■□□□□ 0.97
SEMA4D-222ENST00000540183 SLIT2O94813 1529 aa21.13■□□□□ 0.97
SEMA4D-222ENST00000540183 DHX57Q6P158 1386 aaKnown RBP21.12■□□□□ 0.97
SEMA4D-222ENST00000540183 RAB3GAP2Q9H2M9 1393 aa21.12■□□□□ 0.97
SEMA4D-222ENST00000540183 CABLES1Q8TDN4 633 aa21.12■□□□□ 0.97
SEMA4D-222ENST00000540183 GJD4Q96KN9 370 aaPredicted RBP21.12■□□□□ 0.97
SEMA4D-222ENST00000540183 PRAM1Q96QH2 718 aa21.12■□□□□ 0.97
SEMA4D-222ENST00000540183 PHF8Q9UPP1 1060 aa21.12■□□□□ 0.97
SEMA4D-222ENST00000540183 RALGAPBQ86X10 1494 aa21.11■□□□□ 0.97
SEMA4D-222ENST00000540183 TNS3Q68CZ2 1445 aa21.11■□□□□ 0.97
SEMA4D-222ENST00000540183 ADGRB1O14514 1584 aa21.1■□□□□ 0.97
SEMA4D-222ENST00000540183 TRPM3Q9HCF6 1732 aaPredicted RBP21.09■□□□□ 0.97
SEMA4D-222ENST00000540183 DLC1Q96QB1 1528 aa21.09■□□□□ 0.97
SEMA4D-222ENST00000540183 ADGRB2O60241 1585 aa21.08■□□□□ 0.97
SEMA4D-222ENST00000540183 UNC5CLQ8IV45 518 aa21.08■□□□□ 0.97
SEMA4D-222ENST00000540183 NWD2Q9ULI1 1742 aa21.08■□□□□ 0.97
SEMA4D-222ENST00000540183 SRCAPQ6ZRS2 3230 aa21.07■□□□□ 0.96
SEMA4D-222ENST00000540183 PMFBP1Q8TBY8 1022 aa21.06■□□□□ 0.96
SEMA4D-222ENST00000540183 LMOD2Q6P5Q4 547 aa21.05■□□□□ 0.96
SEMA4D-222ENST00000540183 HIRIP3Q9BW71 556 aaPredicted RBP21.05■□□□□ 0.96
SEMA4D-222ENST00000540183 POGKQ9P215 609 aa21.05■□□□□ 0.96
SEMA4D-222ENST00000540183 ALS2Q96Q42 1657 aa21.05■□□□□ 0.96
SEMA4D-222ENST00000540183 HAP1P54257 671 aaPredicted RBP21.04■□□□□ 0.96
SEMA4D-222ENST00000540183 PSME1Q06323 249 aa21.04■□□□□ 0.96
SEMA4D-222ENST00000540183 TRAK1Q9UPV9 953 aa21.04■□□□□ 0.96
SEMA4D-222ENST00000540183 KDM2AQ9Y2K7 1162 aa21.04■□□□□ 0.96
SEMA4D-222ENST00000540183 NRAPQ86VF7 1730 aa21.04■□□□□ 0.96
SEMA4D-222ENST00000540183 SBNO1A3KN83 1393 aa21.03■□□□□ 0.96
SEMA4D-222ENST00000540183 ARHGEF28Q8N1W1 1705 aaKnown RBP21.02■□□□□ 0.96
SEMA4D-222ENST00000540183 ANKARQ7Z5J8 1434 aa21.02■□□□□ 0.96
SEMA4D-222ENST00000540183 MINK1Q8N4C8 1332 aaPredicted RBP21.02■□□□□ 0.95
SEMA4D-222ENST00000540183 PRR36Q9H6K5 1346 aa21.01■□□□□ 0.95
SEMA4D-222ENST00000540183 ACIN1Q9UKV3 1341 aaKnown RBP21.01■□□□□ 0.95
SEMA4D-222ENST00000540183 CRYBG1Q9Y4K1 1723 aa21.01■□□□□ 0.95
SEMA4D-222ENST00000540183 DCAF11Q8TEB1 546 aa20.99■□□□□ 0.95
SEMA4D-222ENST00000540183 ARHGEF10O15013 1369 aa20.98■□□□□ 0.95
SEMA4D-222ENST00000540183 FAM83GA6ND36 823 aa20.98■□□□□ 0.95
SEMA4D-222ENST00000540183 VPS72Q15906 364 aa20.98■□□□□ 0.95
SEMA4D-222ENST00000540183 SEPT12Q8IYM1 358 aa20.98■□□□□ 0.95
SEMA4D-222ENST00000540183 TULP4Q9NRJ4 1543 aa20.98■□□□□ 0.95
SEMA4D-222ENST00000540183 CCDC9Q9Y3X0 531 aaKnown RBP20.97■□□□□ 0.95
SEMA4D-222ENST00000540183 CCDC125Q86Z20 511 aa20.96■□□□□ 0.95
SEMA4D-222ENST00000540183 ZRANB1Q9UGI0 708 aa20.96■□□□□ 0.95
SEMA4D-222ENST00000540183 ITSN1Q15811 1721 aa20.95■□□□□ 0.94
SEMA4D-222ENST00000540183 COL14A1Q05707 1796 aaKnown RBP20.95■□□□□ 0.94
SEMA4D-222ENST00000540183 DEFB132Q7Z7B7 95 aa20.95■□□□□ 0.94
SEMA4D-222ENST00000540183 BLMP54132 1417 aaPredicted RBP20.95■□□□□ 0.94
SEMA4D-222ENST00000540183 WASLO00401 505 aaPredicted RBP20.92■□□□□ 0.94
SEMA4D-222ENST00000540183 GPRASP1Q5JY77 1395 aa20.9■□□□□ 0.94
SEMA4D-222ENST00000540183 ONECUT3O60422 494 aaPredicted RBP20.9■□□□□ 0.94
SEMA4D-222ENST00000540183 BTG4Q9NY30 223 aa20.9■□□□□ 0.94
SEMA4D-222ENST00000540183 PHRF1Q9P1Y6 1649 aaKnown RBP20.89■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms