RNA–Protein interactions for RNA: ENST00000538456.3

SMARCA4-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 3

Gene SMARCA4, Length 738 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-206ENST00000538456 EP400Q96L91 3159 aa21.18■□□□□ 0.98
SMARCA4-206ENST00000538456 CDC42BPGQ6DT37 1551 aa21.18■□□□□ 0.98
SMARCA4-206ENST00000538456 MARF1Q9Y4F3 1742 aaKnown RBP21.16■□□□□ 0.98
SMARCA4-206ENST00000538456 RPGRIP1LQ68CZ1 1315 aa21.16■□□□□ 0.98
SMARCA4-206ENST00000538456 ESCO1Q5FWF5 840 aa21.16■□□□□ 0.98
SMARCA4-206ENST00000538456 MYOM2P54296 1465 aa21.15■□□□□ 0.98
SMARCA4-206ENST00000538456 ATRNO75882 1429 aa21.15■□□□□ 0.98
SMARCA4-206ENST00000538456 FNBP4Q8N3X1 1017 aaPredicted RBP21.15■□□□□ 0.98
SMARCA4-206ENST00000538456 SLC4A1APQ9BWU0 796 aaKnown RBP21.15■□□□□ 0.98
SMARCA4-206ENST00000538456 PXDNQ92626 1479 aa21.14■□□□□ 0.98
SMARCA4-206ENST00000538456 XPCQ01831 940 aaPredicted RBP21.14■□□□□ 0.97
SMARCA4-206ENST00000538456 NPHP3Q7Z494 1330 aa21.13■□□□□ 0.97
SMARCA4-206ENST00000538456 NUTM2FA1L443 756 aa21.11■□□□□ 0.97
SMARCA4-206ENST00000538456 FOXO3O43524 673 aa21.11■□□□□ 0.97
SMARCA4-206ENST00000538456 FOXD1Q16676 465 aa21.11■□□□□ 0.97
SMARCA4-206ENST00000538456 BCL9LQ86UU0 1499 aa21.1■□□□□ 0.97
SMARCA4-206ENST00000538456 STK26Q9P289 416 aa21.1■□□□□ 0.97
SMARCA4-206ENST00000538456 ADGRF5Q8IZF2 1346 aa21.08■□□□□ 0.97
SMARCA4-206ENST00000538456 IFT172Q9UG01 1749 aa21.07■□□□□ 0.96
SMARCA4-206ENST00000538456 WAPLQ7Z5K2 1190 aa21.07■□□□□ 0.96
SMARCA4-206ENST00000538456 CCDC144AA2RUR9 1427 aa21.05■□□□□ 0.96
SMARCA4-206ENST00000538456 KNDC1Q76NI1 1749 aa21.05■□□□□ 0.96
SMARCA4-206ENST00000538456 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.05■□□□□ 0.96
SMARCA4-206ENST00000538456 RGL3Q3MIN7 710 aa21.05■□□□□ 0.96
SMARCA4-206ENST00000538456 ZRANB1Q9UGI0 708 aa21.05■□□□□ 0.96
SMARCA4-206ENST00000538456 LRPPRCP42704 1394 aaKnown RBP21.05■□□□□ 0.96
SMARCA4-206ENST00000538456 TECPR2O15040 1411 aa21.04■□□□□ 0.96
SMARCA4-206ENST00000538456 FMN2Q9NZ56 1722 aa21.04■□□□□ 0.96
SMARCA4-206ENST00000538456 PLEKHH1Q9ULM0 1364 aa21.04■□□□□ 0.96
SMARCA4-206ENST00000538456 GJD4Q96KN9 370 aaPredicted RBP21.03■□□□□ 0.96
SMARCA4-206ENST00000538456 KIF1AQ12756 1690 aa21.02■□□□□ 0.96
SMARCA4-206ENST00000538456 TMEM132EQ6IEE7 984 aa21.02■□□□□ 0.96
SMARCA4-206ENST00000538456 SPATA31E1Q6ZUB1 1445 aa21.01■□□□□ 0.95
SMARCA4-206ENST00000538456 GLI3P10071 1580 aa21.01■□□□□ 0.95
SMARCA4-206ENST00000538456 USP32Q8NFA0 1604 aa21■□□□□ 0.95
SMARCA4-206ENST00000538456 RALGAPBQ86X10 1494 aa21■□□□□ 0.95
SMARCA4-206ENST00000538456 RGPD8O14715 1765 aaPredicted RBP21■□□□□ 0.95
SMARCA4-206ENST00000538456 ANKRD30BQ9BXX2 1392 aa20.99■□□□□ 0.95
SMARCA4-206ENST00000538456 BRWD3Q6RI45 1802 aa20.99■□□□□ 0.95
SMARCA4-206ENST00000538456 ABCC11Q96J66 1382 aa20.98■□□□□ 0.95
SMARCA4-206ENST00000538456 PIK3C2GO75747 1445 aa20.98■□□□□ 0.95
SMARCA4-206ENST00000538456 CCDC125Q86Z20 511 aa20.98■□□□□ 0.95
SMARCA4-206ENST00000538456 SPATA31A3Q5VYP0 1347 aa20.98■□□□□ 0.95
SMARCA4-206ENST00000538456 SLIT2O94813 1529 aa20.98■□□□□ 0.95
SMARCA4-206ENST00000538456 PLEKHG5O94827 1062 aa20.97■□□□□ 0.95
SMARCA4-206ENST00000538456 UNC5CLQ8IV45 518 aa20.97■□□□□ 0.95
SMARCA4-206ENST00000538456 YTHDC2Q9H6S0 1430 aaKnown RBP20.96■□□□□ 0.95
SMARCA4-206ENST00000538456 KRT28Q7Z3Y7 464 aa20.95■□□□□ 0.94
SMARCA4-206ENST00000538456 PLCH1Q4KWH8 1693 aa20.95■□□□□ 0.94
SMARCA4-206ENST00000538456 HAP1P54257 671 aaPredicted RBP20.94■□□□□ 0.94
SMARCA4-206ENST00000538456 MPHOSPH9Q99550 1183 aa20.93■□□□□ 0.94
SMARCA4-206ENST00000538456 BLMP54132 1417 aaPredicted RBP20.93■□□□□ 0.94
SMARCA4-206ENST00000538456 TNS3Q68CZ2 1445 aa20.93■□□□□ 0.94
SMARCA4-206ENST00000538456 ABCA3Q99758 1704 aa20.92■□□□□ 0.94
SMARCA4-206ENST00000538456 CABLES1Q8TDN4 633 aa20.92■□□□□ 0.94
SMARCA4-206ENST00000538456 PHF8Q9UPP1 1060 aa20.9■□□□□ 0.94
SMARCA4-206ENST00000538456 NWD2Q9ULI1 1742 aa20.9■□□□□ 0.94
SMARCA4-206ENST00000538456 SAFB2Q14151 953 aaKnown RBP eCLIP20.89■□□□□ 0.93
SMARCA4-206ENST00000538456 LMOD2Q6P5Q4 547 aa20.89■□□□□ 0.93
SMARCA4-206ENST00000538456 DEFB132Q7Z7B7 95 aa20.89■□□□□ 0.93
SMARCA4-206ENST00000538456 CCDC9Q9Y3X0 531 aaKnown RBP20.89■□□□□ 0.93
SMARCA4-206ENST00000538456 SEPT12Q8IYM1 358 aa20.88■□□□□ 0.93
SMARCA4-206ENST00000538456 PSME1Q06323 249 aa20.87■□□□□ 0.93
SMARCA4-206ENST00000538456 NRXN1Q9ULB1 1477 aa20.87■□□□□ 0.93
SMARCA4-206ENST00000538456 SF3B2Q13435 895 aaKnown RBP20.86■□□□□ 0.93
SMARCA4-206ENST00000538456 VPS72Q15906 364 aa20.86■□□□□ 0.93
SMARCA4-206ENST00000538456 CFAP70Q5T0N1 1121 aa20.85■□□□□ 0.93
SMARCA4-206ENST00000538456 PRAM1Q96QH2 718 aa20.85■□□□□ 0.93
SMARCA4-206ENST00000538456 C14orf93Q9H972 538 aaKnown RBP20.85■□□□□ 0.93
SMARCA4-206ENST00000538456 DHX57Q6P158 1386 aaKnown RBP20.85■□□□□ 0.93
SMARCA4-206ENST00000538456 SIRT1Q96EB6 747 aa20.84■□□□□ 0.93
SMARCA4-206ENST00000538456 SBNO1A3KN83 1393 aa20.84■□□□□ 0.93
SMARCA4-206ENST00000538456 ARHGEF10O15013 1369 aa20.84■□□□□ 0.93
SMARCA4-206ENST00000538456 A0A0G2JS52 829 aa20.83■□□□□ 0.93
SMARCA4-206ENST00000538456 MYT1Q01538 1121 aa20.83■□□□□ 0.93
SMARCA4-206ENST00000538456 PMFBP1Q8TBY8 1022 aa20.82■□□□□ 0.92
SMARCA4-206ENST00000538456 KRT27Q7Z3Y8 459 aa20.81■□□□□ 0.92
SMARCA4-206ENST00000538456 NRAPQ86VF7 1730 aa20.81■□□□□ 0.92
SMARCA4-206ENST00000538456 POGKQ9P215 609 aa20.8■□□□□ 0.92
SMARCA4-206ENST00000538456 TRPM3Q9HCF6 1732 aaPredicted RBP20.79■□□□□ 0.92
SMARCA4-206ENST00000538456 FAM83GA6ND36 823 aa20.79■□□□□ 0.92
SMARCA4-206ENST00000538456 ADGRB2O60241 1585 aa20.79■□□□□ 0.92
SMARCA4-206ENST00000538456 ANKARQ7Z5J8 1434 aa20.78■□□□□ 0.92
SMARCA4-206ENST00000538456 DLC1Q96QB1 1528 aa20.78■□□□□ 0.92
SMARCA4-206ENST00000538456 ONECUT3O60422 494 aaPredicted RBP20.77■□□□□ 0.92
SMARCA4-206ENST00000538456 LRP5O75197 1615 aa20.77■□□□□ 0.92
SMARCA4-206ENST00000538456 ALS2Q96Q42 1657 aa20.77■□□□□ 0.91
SMARCA4-206ENST00000538456 FAM98CQ17RN3 349 aaKnown RBP20.76■□□□□ 0.91
SMARCA4-206ENST00000538456 HIRIP3Q9BW71 556 aaPredicted RBP20.76■□□□□ 0.91
SMARCA4-206ENST00000538456 COL14A1Q05707 1796 aaKnown RBP20.75■□□□□ 0.91
SMARCA4-206ENST00000538456 BTG4Q9NY30 223 aa20.75■□□□□ 0.91
SMARCA4-206ENST00000538456 PSDA5PKW4 1024 aaPredicted RBP20.74■□□□□ 0.91
SMARCA4-206ENST00000538456 ADGRB1O14514 1584 aa20.74■□□□□ 0.91
SMARCA4-206ENST00000538456 GPRASP1Q5JY77 1395 aa20.73■□□□□ 0.91
SMARCA4-206ENST00000538456 TRAK1Q9UPV9 953 aa20.73■□□□□ 0.91
SMARCA4-206ENST00000538456 MINK1Q8N4C8 1332 aaPredicted RBP20.73■□□□□ 0.91
SMARCA4-206ENST00000538456 BAG6P46379 1132 aa20.72■□□□□ 0.91
SMARCA4-206ENST00000538456 RGPD1P0DJD0 1748 aa20.72■□□□□ 0.91
SMARCA4-206ENST00000538456 CRYBG1Q9Y4K1 1723 aa20.71■□□□□ 0.91
SMARCA4-206ENST00000538456 TULP4Q9NRJ4 1543 aa20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 124.4 ms