RNA–Protein interactions for RNA: ENST00000538070.1

UBE3B-208, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 5

Gene UBE3B, Length 3,655 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-208ENST00000538070 MAPK8IP3Q9UPT6 1336 aa11.26□□□□□ -0.61
UBE3B-208ENST00000538070 TET3O43151 1660 aa11.26□□□□□ -0.61
UBE3B-208ENST00000538070 CDK19Q9BWU1 502 aa11.26□□□□□ -0.61
UBE3B-208ENST00000538070 ABCA9Q8IUA7 1624 aa11.26□□□□□ -0.61
UBE3B-208ENST00000538070 TXNDC2Q86VQ3 553 aa11.26□□□□□ -0.61
UBE3B-208ENST00000538070 CEP152O94986 1710 aa11.25□□□□□ -0.61
UBE3B-208ENST00000538070 ELL2O00472 640 aaPredicted RBP11.25□□□□□ -0.61
UBE3B-208ENST00000538070 HMOX1P09601 288 aa11.25□□□□□ -0.61
UBE3B-208ENST00000538070 TRHP20396 242 aaPredicted RBP11.25□□□□□ -0.61
UBE3B-208ENST00000538070 NCKAP5LQ9HCH0 1330 aa11.25□□□□□ -0.61
UBE3B-208ENST00000538070 BACH2Q9BYV9 841 aa11.25□□□□□ -0.61
UBE3B-208ENST00000538070 KIDINS220Q9ULH0 1771 aa11.25□□□□□ -0.61
UBE3B-208ENST00000538070 INO80Q9ULG1 1556 aaPredicted RBP11.25□□□□□ -0.61
UBE3B-208ENST00000538070 HDGFL2Q7Z4V5 671 aaPredicted RBP11.24□□□□□ -0.61
UBE3B-208ENST00000538070 TERF2IPQ9NYB0 399 aa11.24□□□□□ -0.61
UBE3B-208ENST00000538070 SLC52A1Q9NWF4 448 aa11.24□□□□□ -0.61
UBE3B-208ENST00000538070 FTSJ3Q8IY81 847 aaKnown RBP11.24□□□□□ -0.61
UBE3B-208ENST00000538070 EFCAB6Q5THR3 1501 aa11.24□□□□□ -0.61
UBE3B-208ENST00000538070 PPRC1Q5VV67 1664 aaKnown RBP11.24□□□□□ -0.61
UBE3B-208ENST00000538070 RPGRIP1LQ68CZ1 1315 aa11.23□□□□□ -0.61
UBE3B-208ENST00000538070 ABCA6Q8N139 1617 aa11.23□□□□□ -0.61
UBE3B-208ENST00000538070 ZMYM4Q5VZL5 1548 aa11.23□□□□□ -0.61
UBE3B-208ENST00000538070 RNF17Q9BXT8 1623 aaKnown RBP11.23□□□□□ -0.61
UBE3B-208ENST00000538070 IGHDP01880 384 aa11.22□□□□□ -0.61
UBE3B-208ENST00000538070 NEFMP07197 916 aa11.22□□□□□ -0.61
UBE3B-208ENST00000538070 CENPQQ7L2Z9 268 aaPredicted RBP11.22□□□□□ -0.61
UBE3B-208ENST00000538070 ZRANB1Q9UGI0 708 aa11.22□□□□□ -0.61
UBE3B-208ENST00000538070 ARAP3Q8WWN8 1544 aa11.22□□□□□ -0.61
UBE3B-208ENST00000538070 PIK3C2GO75747 1445 aa11.22□□□□□ -0.61
UBE3B-208ENST00000538070 ZNF521Q96K83 1311 aa11.22□□□□□ -0.61
UBE3B-208ENST00000538070 THUMPD2Q9BTF0 503 aaKnown RBP11.22□□□□□ -0.61
UBE3B-208ENST00000538070 SMC4Q9NTJ3 1288 aa11.22□□□□□ -0.61
UBE3B-208ENST00000538070 MAP3K4Q9Y6R4 1608 aa11.22□□□□□ -0.61
UBE3B-208ENST00000538070 KIF1BO60333 1816 aa11.22□□□□□ -0.61
UBE3B-208ENST00000538070 RIPK4P57078 832 aa11.21□□□□□ -0.61
UBE3B-208ENST00000538070 FYB1O15117 783 aa11.21□□□□□ -0.62
UBE3B-208ENST00000538070 EXOSC9Q06265 439 aaKnown RBP11.21□□□□□ -0.62
UBE3B-208ENST00000538070 MROH1Q8NDA8 1641 aa11.2□□□□□ -0.62
UBE3B-208ENST00000538070 DEKP35659 375 aaKnown RBP11.2□□□□□ -0.62
UBE3B-208ENST00000538070 KDM5AP29375 1690 aaKnown RBP11.2□□□□□ -0.62
UBE3B-208ENST00000538070 RLBP1P12271 317 aa11.2□□□□□ -0.62
UBE3B-208ENST00000538070 CEBPAP49715 358 aaPredicted RBP11.2□□□□□ -0.62
UBE3B-208ENST00000538070 ITPRIPQ8IWB1 547 aa11.2□□□□□ -0.62
UBE3B-208ENST00000538070 MROH2AA6NES4 1674 aa11.19□□□□□ -0.62
UBE3B-208ENST00000538070 IQGAP1P46940 1657 aa11.19□□□□□ -0.62
UBE3B-208ENST00000538070 A0A1W2PP64 1363 aa11.19□□□□□ -0.62
UBE3B-208ENST00000538070 NKTRP30414 1462 aaKnown RBP11.19□□□□□ -0.62
UBE3B-208ENST00000538070 SYNMO15061 1565 aa11.19□□□□□ -0.62
UBE3B-208ENST00000538070 DIAPH1O60610 1272 aaKnown RBP11.19□□□□□ -0.62
UBE3B-208ENST00000538070 RARSP54136 660 aaKnown RBP11.19□□□□□ -0.62
UBE3B-208ENST00000538070 RRS1Q15050 365 aaKnown RBP11.19□□□□□ -0.62
UBE3B-208ENST00000538070 MLH3Q9UHC1 1453 aa11.19□□□□□ -0.62
UBE3B-208ENST00000538070 MYH16Q9H6N6 1097 aa11.19□□□□□ -0.62
UBE3B-208ENST00000538070 MYOM2P54296 1465 aa11.18□□□□□ -0.62
UBE3B-208ENST00000538070 LAMC1P11047 1609 aa11.18□□□□□ -0.62
UBE3B-208ENST00000538070 ABCC3O15438 1527 aa11.18□□□□□ -0.62
UBE3B-208ENST00000538070 NME9Q86XW9 330 aa11.18□□□□□ -0.62
UBE3B-208ENST00000538070 EMILIN1Q9Y6C2 1016 aa11.18□□□□□ -0.62
UBE3B-208ENST00000538070 SLC26A8Q96RN1 970 aa11.17□□□□□ -0.62
UBE3B-208ENST00000538070 MS4A1P11836 297 aa11.17□□□□□ -0.62
UBE3B-208ENST00000538070 PRKAR2BP31323 418 aa11.17□□□□□ -0.62
UBE3B-208ENST00000538070 TSPOAP1O95153 1857 aa11.17□□□□□ -0.62
UBE3B-208ENST00000538070 DEPDC5O75140 1603 aa11.17□□□□□ -0.62
UBE3B-208ENST00000538070 SPRYD3Q8NCJ5 442 aa11.17□□□□□ -0.62
UBE3B-208ENST00000538070 HECW2Q9P2P5 1572 aa11.17□□□□□ -0.62
UBE3B-208ENST00000538070 TMPOP42166 694 aaKnown RBP11.16□□□□□ -0.62
UBE3B-208ENST00000538070 VWDEQ8N2E2 1590 aa11.16□□□□□ -0.62
UBE3B-208ENST00000538070 POLR3AO14802 1390 aaPredicted RBP11.16□□□□□ -0.62
UBE3B-208ENST00000538070 FRMPD1Q5SYB0 1578 aa11.16□□□□□ -0.62
UBE3B-208ENST00000538070 FAM161AQ3B820 660 aa11.16□□□□□ -0.62
UBE3B-208ENST00000538070 NPC1L1Q9UHC9 1359 aa11.16□□□□□ -0.62
UBE3B-208ENST00000538070 ANKRD36BQ8N2N9 1353 aa11.16□□□□□ -0.62
UBE3B-208ENST00000538070 PCDHB15Q9Y5E8 787 aa11.15□□□□□ -0.62
UBE3B-208ENST00000538070 ZBTB7CA1YPR0 619 aa11.15□□□□□ -0.62
UBE3B-208ENST00000538070 C14orf37Q86TY3 774 aa11.15□□□□□ -0.62
UBE3B-208ENST00000538070 TRMT2AQ8IZ69 625 aaKnown RBP11.15□□□□□ -0.62
UBE3B-208ENST00000538070 ADGRB3O60242 1522 aa11.14□□□□□ -0.63
UBE3B-208ENST00000538070 DCTN1Q14203 1278 aa11.14□□□□□ -0.63
UBE3B-208ENST00000538070 KDM2BQ8NHM5 1336 aa11.14□□□□□ -0.63
UBE3B-208ENST00000538070 ZKSCAN2Q63HK3 967 aa11.13□□□□□ -0.63
UBE3B-208ENST00000538070 SSH1Q8WYL5 1049 aa11.13□□□□□ -0.63
UBE3B-208ENST00000538070 NUTM2GQ5VZR2 741 aa11.13□□□□□ -0.63
UBE3B-208ENST00000538070 PMFBP1Q8TBY8 1022 aa11.13□□□□□ -0.63
UBE3B-208ENST00000538070 NOB1Q9ULX3 412 aaKnown RBP11.13□□□□□ -0.63
UBE3B-208ENST00000538070 DZIP1LQ8IYY4 767 aaKnown RBP11.13□□□□□ -0.63
UBE3B-208ENST00000538070 YTHDC2Q9H6S0 1430 aaKnown RBP11.13□□□□□ -0.63
UBE3B-208ENST00000538070 WDR63Q8IWG1 891 aa11.12□□□□□ -0.63
UBE3B-208ENST00000538070 RBM33Q96EV2 1170 aaKnown RBP11.12□□□□□ -0.63
UBE3B-208ENST00000538070 PDE3AQ14432 1141 aa11.12□□□□□ -0.63
UBE3B-208ENST00000538070 PHACTR3Q96KR7 559 aa11.12□□□□□ -0.63
UBE3B-208ENST00000538070 C1orf115Q9H7X2 142 aa11.12□□□□□ -0.63
UBE3B-208ENST00000538070 SBNO2Q9Y2G9 1366 aa11.12□□□□□ -0.63
UBE3B-208ENST00000538070 NEO1Q92859 1461 aa11.12□□□□□ -0.63
UBE3B-208ENST00000538070 NUDT16Q96DE0 195 aaKnown RBP11.12□□□□□ -0.63
UBE3B-208ENST00000538070 SLKQ9H2G2 1235 aaPredicted RBP11.12□□□□□ -0.63
UBE3B-208ENST00000538070 PDZRN3Q9UPQ7 1066 aa11.12□□□□□ -0.63
UBE3B-208ENST00000538070 MYOM1P52179 1685 aa11.12□□□□□ -0.63
UBE3B-208ENST00000538070 RIMBP3CA6NJZ7 1639 aa11.11□□□□□ -0.63
UBE3B-208ENST00000538070 RIMBP3BA6NNM3 1639 aa11.11□□□□□ -0.63
UBE3B-208ENST00000538070 RIMBP3Q9UFD9 1639 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms