RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 PTPRKQ15262 1439 aa4.91□□□□□ -1.62
MCF2-210ENST00000536274 MAP3K1Q13233 1512 aa4.91□□□□□ -1.62
MCF2-210ENST00000536274 VASPP50552 380 aaPredicted RBP4.91□□□□□ -1.62
MCF2-210ENST00000536274 PZPP20742 1482 aa4.91□□□□□ -1.62
MCF2-210ENST00000536274 VWDEQ8N2E2 1590 aa4.91□□□□□ -1.62
MCF2-210ENST00000536274 TSPYL2Q9H2G4 693 aaPredicted RBP4.91□□□□□ -1.62
MCF2-210ENST00000536274 PTPN23Q9H3S7 1636 aa4.91□□□□□ -1.62
MCF2-210ENST00000536274 ERBB4Q15303 1308 aa4.91□□□□□ -1.62
MCF2-210ENST00000536274 EXOC6Q8TAG9 804 aa4.91□□□□□ -1.62
MCF2-210ENST00000536274 ZNF830Q96NB3 372 aaPredicted RBP4.91□□□□□ -1.62
MCF2-210ENST00000536274 BACH2Q9BYV9 841 aa4.91□□□□□ -1.62
MCF2-210ENST00000536274 MED1Q15648 1581 aaPredicted RBP4.9□□□□□ -1.62
MCF2-210ENST00000536274 NWD1Q149M9 1564 aa4.9□□□□□ -1.62
MCF2-210ENST00000536274 IQGAP1P46940 1657 aa4.9□□□□□ -1.63
MCF2-210ENST00000536274 TAF7LQ5H9L4 462 aa4.9□□□□□ -1.63
MCF2-210ENST00000536274 KANK4Q5T7N3 995 aaPredicted RBP4.89□□□□□ -1.63
MCF2-210ENST00000536274 A2MP01023 1474 aa4.89□□□□□ -1.63
MCF2-210ENST00000536274 LRRC9Q6ZRR7 1453 aa4.89□□□□□ -1.63
MCF2-210ENST00000536274 ZBTB7CA1YPR0 619 aa4.89□□□□□ -1.63
MCF2-210ENST00000536274 XRCC6P12956 609 aaKnown RBP eCLIP4.89□□□□□ -1.63
MCF2-210ENST00000536274 FAM13BQ9NYF5 915 aa4.89□□□□□ -1.63
MCF2-210ENST00000536274 CALD1Q05682 793 aaKnown RBP4.89□□□□□ -1.63
MCF2-210ENST00000536274 IER5LQ5T953 404 aa4.89□□□□□ -1.63
MCF2-210ENST00000536274 DCAF8Q5TAQ9 597 aa4.89□□□□□ -1.63
MCF2-210ENST00000536274 DDRGK1Q96HY6 314 aa4.89□□□□□ -1.63
MCF2-210ENST00000536274 SLKQ9H2G2 1235 aaPredicted RBP4.89□□□□□ -1.63
MCF2-210ENST00000536274 MRS2Q9HD23 443 aa4.89□□□□□ -1.63
MCF2-210ENST00000536274 TIAM1Q13009 1591 aa4.89□□□□□ -1.63
MCF2-210ENST00000536274 ABCC3O15438 1527 aa4.88□□□□□ -1.63
MCF2-210ENST00000536274 SLIT1O75093 1534 aa4.88□□□□□ -1.63
MCF2-210ENST00000536274 CANXP27824 592 aaKnown RBP4.88□□□□□ -1.63
MCF2-210ENST00000536274 SPRYD3Q8NCJ5 442 aa4.88□□□□□ -1.63
MCF2-210ENST00000536274 KIF12Q96FN5 646 aa4.88□□□□□ -1.63
MCF2-210ENST00000536274 PHF12Q96QT6 1004 aa4.88□□□□□ -1.63
MCF2-210ENST00000536274 CROCC2H7BZ55 1655 aa4.88□□□□□ -1.63
MCF2-210ENST00000536274 SPOCK2Q92563 424 aa4.88□□□□□ -1.63
MCF2-210ENST00000536274 CCDC61Q9Y6R9 512 aa4.88□□□□□ -1.63
MCF2-210ENST00000536274 SHANK2Q9UPX8 1470 aa4.88□□□□□ -1.63
MCF2-210ENST00000536274 LMTK2Q8IWU2 1503 aa4.88□□□□□ -1.63
MCF2-210ENST00000536274 SYCP2Q9BX26 1530 aa4.88□□□□□ -1.63
MCF2-210ENST00000536274 E9PSI1 815 aa4.88□□□□□ -1.63
MCF2-210ENST00000536274 CHRM1P11229 460 aaPredicted RBP4.88□□□□□ -1.63
MCF2-210ENST00000536274 ZNF467Q7Z7K2 595 aaPredicted RBP4.88□□□□□ -1.63
MCF2-210ENST00000536274 CERS3Q8IU89 383 aa4.88□□□□□ -1.63
MCF2-210ENST00000536274 CFAP44Q96MT7 982 aa4.88□□□□□ -1.63
MCF2-210ENST00000536274 CHMP4AQ9BY43 222 aa4.88□□□□□ -1.63
MCF2-210ENST00000536274 ARHGAP31Q2M1Z3 1444 aa4.88□□□□□ -1.63
MCF2-210ENST00000536274 GPATCH8Q9UKJ3 1502 aaKnown RBP4.87□□□□□ -1.63
MCF2-210ENST00000536274 RAPGEF3O95398 923 aa4.87□□□□□ -1.63
MCF2-210ENST00000536274 CLCN1P35523 988 aa4.87□□□□□ -1.63
MCF2-210ENST00000536274 ASTLQ6HA08 431 aaPredicted RBP4.87□□□□□ -1.63
MCF2-210ENST00000536274 ARHGAP23Q9P227 1491 aa4.87□□□□□ -1.63
MCF2-210ENST00000536274 PRDM15P57071 1507 aaPredicted RBP4.87□□□□□ -1.63
MCF2-210ENST00000536274 PDCL3Q9H2J4 239 aa4.87□□□□□ -1.63
MCF2-210ENST00000536274 UGGT1Q9NYU2 1555 aa4.87□□□□□ -1.63
MCF2-210ENST00000536274 ALKQ9UM73 1620 aa4.87□□□□□ -1.63
MCF2-210ENST00000536274 PLIN1O60240 522 aa4.87□□□□□ -1.63
MCF2-210ENST00000536274 NUBP1P53384 320 aa4.87□□□□□ -1.63
MCF2-210ENST00000536274 UBR1Q8IWV7 1749 aa4.86□□□□□ -1.63
MCF2-210ENST00000536274 IGSF3O75054 1194 aa4.86□□□□□ -1.63
MCF2-210ENST00000536274 RSPH4AQ5TD94 716 aa4.86□□□□□ -1.63
MCF2-210ENST00000536274 DIP2AQ14689 1571 aa4.86□□□□□ -1.63
MCF2-210ENST00000536274 MBD5Q9P267 1494 aa4.86□□□□□ -1.63
MCF2-210ENST00000536274 KIAA1211Q6ZU35 1233 aa4.86□□□□□ -1.63
MCF2-210ENST00000536274 JARID2Q92833 1246 aaPredicted RBP4.86□□□□□ -1.63
MCF2-210ENST00000536274 ZBTB9Q96C00 473 aa4.86□□□□□ -1.63
MCF2-210ENST00000536274 ZFP91Q96JP5 570 aaPredicted RBP4.86□□□□□ -1.63
MCF2-210ENST00000536274 CCDC141Q6ZP82 1450 aa4.86□□□□□ -1.63
MCF2-210ENST00000536274 NCOA3Q9Y6Q9 1424 aa4.86□□□□□ -1.63
MCF2-210ENST00000536274 SCUBE2Q9NQ36 999 aa4.85□□□□□ -1.63
MCF2-210ENST00000536274 MROH1Q8NDA8 1641 aa4.85□□□□□ -1.63
MCF2-210ENST00000536274 RIPK4P57078 832 aa4.85□□□□□ -1.63
MCF2-210ENST00000536274 MS4A3Q96HJ5 214 aa4.85□□□□□ -1.63
MCF2-210ENST00000536274 TMEM51Q9NW97 253 aa4.85□□□□□ -1.63
MCF2-210ENST00000536274 NKTRP30414 1462 aaKnown RBP4.85□□□□□ -1.63
MCF2-210ENST00000536274 GALR2O43603 387 aaPredicted RBP4.84□□□□□ -1.63
MCF2-210ENST00000536274 PCDHB13Q9Y5F0 798 aa4.84□□□□□ -1.63
MCF2-210ENST00000536274 RAB3GAP2Q9H2M9 1393 aa4.84□□□□□ -1.63
MCF2-210ENST00000536274 XIRP1Q702N8 1843 aaKnown RBP4.84□□□□□ -1.63
MCF2-210ENST00000536274 TCERG1O14776 1098 aaKnown RBP4.84□□□□□ -1.63
MCF2-210ENST00000536274 ATMINO43313 823 aaPredicted RBP4.84□□□□□ -1.63
MCF2-210ENST00000536274 DHX29Q7Z478 1369 aaKnown RBP4.84□□□□□ -1.63
MCF2-210ENST00000536274 IPO4Q8TEX9 1081 aaKnown RBP4.84□□□□□ -1.64
MCF2-210ENST00000536274 ZMYM3Q14202 1370 aa4.83□□□□□ -1.64
MCF2-210ENST00000536274 LAMC1P11047 1609 aa4.83□□□□□ -1.64
MCF2-210ENST00000536274 ZBED9Q6R2W3 1325 aa4.83□□□□□ -1.64
MCF2-210ENST00000536274 ESPNB1AK53 854 aa4.83□□□□□ -1.64
MCF2-210ENST00000536274 C14orf37Q86TY3 774 aa4.83□□□□□ -1.64
MCF2-210ENST00000536274 RASEFQ8IZ41 740 aa4.83□□□□□ -1.64
MCF2-210ENST00000536274 CHMP4CQ96CF2 233 aa4.83□□□□□ -1.64
MCF2-210ENST00000536274 POLR3GLQ9BT43 218 aa4.83□□□□□ -1.64
MCF2-210ENST00000536274 ANP32BQ92688 251 aaKnown RBP4.83□□□□□ -1.64
MCF2-210ENST00000536274 SHPRHQ149N8 1683 aa4.83□□□□□ -1.64
MCF2-210ENST00000536274 DUOX2Q9NRD8 1548 aa4.83□□□□□ -1.64
MCF2-210ENST00000536274 SECISBP2LQ93073 1101 aaKnown RBP4.82□□□□□ -1.64
MCF2-210ENST00000536274 CDK12Q9NYV4 1490 aaPredicted RBP4.82□□□□□ -1.64
MCF2-210ENST00000536274 MIA2Q96PC5 1412 aa4.82□□□□□ -1.64
MCF2-210ENST00000536274 SETD1AO15047 1707 aaKnown RBP4.82□□□□□ -1.64
MCF2-210ENST00000536274 GOLGA6L3A6NEY3 463 aa4.82□□□□□ -1.64
MCF2-210ENST00000536274 PPP4R3BQ5MIZ7 849 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms