RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 RNF123Q5XPI4 1314 aa8.59□□□□□ -1.03
SYNE1-233ENST00000535896 TRPM1Q7Z4N2 1603 aa8.59□□□□□ -1.03
SYNE1-233ENST00000535896 KLHL34Q8N239 644 aa8.59□□□□□ -1.03
SYNE1-233ENST00000535896 MRS2Q9HD23 443 aa8.59□□□□□ -1.03
SYNE1-233ENST00000535896 AGLP35573 1532 aa8.58□□□□□ -1.04
SYNE1-233ENST00000535896 EMP3P54852 163 aa8.58□□□□□ -1.04
SYNE1-233ENST00000535896 NBPF8Q3BBV2 869 aa8.58□□□□□ -1.04
SYNE1-233ENST00000535896 A2MP01023 1474 aa8.58□□□□□ -1.04
SYNE1-233ENST00000535896 KIF15Q9NS87 1388 aa8.57□□□□□ -1.04
SYNE1-233ENST00000535896 IQGAP3Q86VI3 1631 aa8.57□□□□□ -1.04
SYNE1-233ENST00000535896 CHRM1P11229 460 aaPredicted RBP8.57□□□□□ -1.04
SYNE1-233ENST00000535896 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.57□□□□□ -1.04
SYNE1-233ENST00000535896 DUOX2Q9NRD8 1548 aa8.57□□□□□ -1.04
SYNE1-233ENST00000535896 BRD4O60885 1362 aaPredicted RBP8.56□□□□□ -1.04
SYNE1-233ENST00000535896 RNF17Q9BXT8 1623 aaKnown RBP8.56□□□□□ -1.04
SYNE1-233ENST00000535896 LRPPRCP42704 1394 aaKnown RBP8.56□□□□□ -1.04
SYNE1-233ENST00000535896 ERBINQ96RT1 1412 aa8.55□□□□□ -1.04
SYNE1-233ENST00000535896 C11orf95C9JLR9 678 aaPredicted RBP8.55□□□□□ -1.04
SYNE1-233ENST00000535896 NUDCQ9Y266 331 aa8.55□□□□□ -1.04
SYNE1-233ENST00000535896 PRDM15P57071 1507 aaPredicted RBP8.54□□□□□ -1.04
SYNE1-233ENST00000535896 FAM135AQ9P2D6 1515 aa8.54□□□□□ -1.04
SYNE1-233ENST00000535896 PSEN1P49768 467 aa8.54□□□□□ -1.04
SYNE1-233ENST00000535896 GPRASP1Q5JY77 1395 aa8.54□□□□□ -1.04
SYNE1-233ENST00000535896 SIGLEC1Q9BZZ2 1709 aa8.53□□□□□ -1.04
SYNE1-233ENST00000535896 RALBP1Q15311 655 aa8.53□□□□□ -1.04
SYNE1-233ENST00000535896 WASHC2CQ9Y4E1 1318 aa8.53□□□□□ -1.04
SYNE1-233ENST00000535896 VASPP50552 380 aaPredicted RBP8.52□□□□□ -1.05
SYNE1-233ENST00000535896 ERICH6Q7L0X2 663 aa8.52□□□□□ -1.05
SYNE1-233ENST00000535896 FAM205CA6NFA0 338 aa8.51□□□□□ -1.05
SYNE1-233ENST00000535896 ADAMTSL3P82987 1691 aa8.51□□□□□ -1.05
SYNE1-233ENST00000535896 HS3ST6Q96QI5 342 aa8.51□□□□□ -1.05
SYNE1-233ENST00000535896 NEURL4Q96JN8 1562 aa8.5□□□□□ -1.05
SYNE1-233ENST00000535896 MYBBP1AQ9BQG0 1328 aaKnown RBP8.5□□□□□ -1.05
SYNE1-233ENST00000535896 POTEB3A0JP26 581 aa8.5□□□□□ -1.05
SYNE1-233ENST00000535896 CCDC184Q52MB2 194 aa8.5□□□□□ -1.05
SYNE1-233ENST00000535896 POTEBQ6S5H4 581 aa8.5□□□□□ -1.05
SYNE1-233ENST00000535896 ILDR1Q86SU0 546 aaPredicted RBP8.5□□□□□ -1.05
SYNE1-233ENST00000535896 FAM9BQ8IZU0 186 aa8.5□□□□□ -1.05
SYNE1-233ENST00000535896 DEPDC5O75140 1603 aa8.5□□□□□ -1.05
SYNE1-233ENST00000535896 PRAG1Q86YV5 1406 aa8.5□□□□□ -1.05
SYNE1-233ENST00000535896 NUP155O75694 1391 aa8.5□□□□□ -1.05
SYNE1-233ENST00000535896 PARD3Q8TEW0 1356 aa8.5□□□□□ -1.05
SYNE1-233ENST00000535896 KIF3BO15066 747 aa8.49□□□□□ -1.05
SYNE1-233ENST00000535896 PDE3BQ13370 1112 aa8.49□□□□□ -1.05
SYNE1-233ENST00000535896 PKD2Q13563 968 aa8.49□□□□□ -1.05
SYNE1-233ENST00000535896 KRTAP3-3Q9BYR6 98 aa8.49□□□□□ -1.05
SYNE1-233ENST00000535896 KRTAP3-2Q9BYR7 98 aa8.49□□□□□ -1.05
SYNE1-233ENST00000535896 FER1L4A9Z1Z3 1794 aa8.49□□□□□ -1.05
SYNE1-233ENST00000535896 MADDQ8WXG6 1647 aa8.49□□□□□ -1.05
SYNE1-233ENST00000535896 KIAA1210Q9ULL0 1709 aa8.48□□□□□ -1.05
SYNE1-233ENST00000535896 PDAP1Q13442 181 aaKnown RBP8.48□□□□□ -1.05
SYNE1-233ENST00000535896 PNISRQ8TF01 805 aaKnown RBP8.48□□□□□ -1.05
SYNE1-233ENST00000535896 ZC3H13Q5T200 1668 aaKnown RBP8.48□□□□□ -1.05
SYNE1-233ENST00000535896 CCDC144AA2RUR9 1427 aa8.48□□□□□ -1.05
SYNE1-233ENST00000535896 CEP152O94986 1710 aa8.48□□□□□ -1.05
SYNE1-233ENST00000535896 IQGAP1P46940 1657 aa8.48□□□□□ -1.05
SYNE1-233ENST00000535896 MROH1Q8NDA8 1641 aa8.48□□□□□ -1.05
SYNE1-233ENST00000535896 MLECQ14165 292 aa8.48□□□□□ -1.05
SYNE1-233ENST00000535896 DPY19L2Q6NUT2 758 aa8.48□□□□□ -1.05
SYNE1-233ENST00000535896 ESF1Q9H501 851 aaKnown RBP8.48□□□□□ -1.05
SYNE1-233ENST00000535896 SPHKAPQ2M3C7 1700 aa8.47□□□□□ -1.05
SYNE1-233ENST00000535896 BLMP54132 1417 aaPredicted RBP8.47□□□□□ -1.05
SYNE1-233ENST00000535896 MROH2AA6NES4 1674 aa8.47□□□□□ -1.05
SYNE1-233ENST00000535896 KANK1Q14678 1352 aa8.47□□□□□ -1.05
SYNE1-233ENST00000535896 GGT6Q6P531 493 aa8.47□□□□□ -1.05
SYNE1-233ENST00000535896 SYNMO15061 1565 aa8.46□□□□□ -1.06
SYNE1-233ENST00000535896 KDM4FA0A1W2PPD8 638 aa8.46□□□□□ -1.06
SYNE1-233ENST00000535896 G3V3G9 751 aa8.46□□□□□ -1.06
SYNE1-233ENST00000535896 NLRP13Q86W25 1043 aa8.46□□□□□ -1.06
SYNE1-233ENST00000535896 CARD11Q9BXL7 1154 aa8.46□□□□□ -1.06
SYNE1-233ENST00000535896 RIMS1Q86UR5 1692 aaKnown RBP8.46□□□□□ -1.06
SYNE1-233ENST00000535896 VWDEQ8N2E2 1590 aa8.45□□□□□ -1.06
SYNE1-233ENST00000535896 ABCC3O15438 1527 aa8.45□□□□□ -1.06
SYNE1-233ENST00000535896 LMTK2Q8IWU2 1503 aa8.45□□□□□ -1.06
SYNE1-233ENST00000535896 PTPRMP28827 1452 aa8.45□□□□□ -1.06
SYNE1-233ENST00000535896 IRX6P78412 446 aaPredicted RBP8.45□□□□□ -1.06
SYNE1-233ENST00000535896 TMC1Q8TDI8 760 aa8.45□□□□□ -1.06
SYNE1-233ENST00000535896 STAC3Q96MF2 364 aa8.45□□□□□ -1.06
SYNE1-233ENST00000535896 CLTCQ00610 1675 aaKnown RBP8.44□□□□□ -1.06
SYNE1-233ENST00000535896 ANP32AP39687 249 aaKnown RBP8.44□□□□□ -1.06
SYNE1-233ENST00000535896 B4GALNT3Q6L9W6 998 aa8.44□□□□□ -1.06
SYNE1-233ENST00000535896 CCDC136Q96JN2 1154 aa8.44□□□□□ -1.06
SYNE1-233ENST00000535896 BCL11AQ9H165 835 aa8.44□□□□□ -1.06
SYNE1-233ENST00000535896 CABP2Q9NPB3 220 aa8.44□□□□□ -1.06
SYNE1-233ENST00000535896 NOP58Q9Y2X3 529 aaKnown RBP8.44□□□□□ -1.06
SYNE1-233ENST00000535896 BOLA1Q9Y3E2 137 aa8.44□□□□□ -1.06
SYNE1-233ENST00000535896 TRPM2O94759 1503 aa8.43□□□□□ -1.06
SYNE1-233ENST00000535896 CAMSAP1Q5T5Y3 1602 aa8.43□□□□□ -1.06
SYNE1-233ENST00000535896 ARHGAP31Q2M1Z3 1444 aa8.42□□□□□ -1.06
SYNE1-233ENST00000535896 TET3O43151 1660 aa8.42□□□□□ -1.06
SYNE1-233ENST00000535896 MS4A1P11836 297 aa8.42□□□□□ -1.06
SYNE1-233ENST00000535896 HOXB3P14651 431 aaPredicted RBP8.42□□□□□ -1.06
SYNE1-233ENST00000535896 ZMYM3Q14202 1370 aa8.42□□□□□ -1.06
SYNE1-233ENST00000535896 C3P01024 1663 aa8.41□□□□□ -1.06
SYNE1-233ENST00000535896 NPATQ14207 1427 aa8.41□□□□□ -1.06
SYNE1-233ENST00000535896 EFCAB6Q5THR3 1501 aa8.41□□□□□ -1.06
SYNE1-233ENST00000535896 TCERG1O14776 1098 aaKnown RBP8.41□□□□□ -1.06
SYNE1-233ENST00000535896 RRP1P56182 461 aaKnown RBP8.41□□□□□ -1.06
SYNE1-233ENST00000535896 PLA2R1Q13018 1463 aa8.41□□□□□ -1.06
SYNE1-233ENST00000535896 VIRMAQ69YN4 1812 aaKnown RBP8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms