RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 SIN3AQ96ST3 1273 aa7.47□□□□□ -1.21
USH1C-210ENST00000534556 RGS17Q9UGC6 210 aaPredicted RBP7.47□□□□□ -1.21
USH1C-210ENST00000534556 LRP6O75581 1613 aa7.47□□□□□ -1.21
USH1C-210ENST00000534556 TRPM1Q7Z4N2 1603 aa7.47□□□□□ -1.21
USH1C-210ENST00000534556 C1orf167Q5SNV9 1468 aa7.47□□□□□ -1.21
USH1C-210ENST00000534556 ACIN1Q9UKV3 1341 aaKnown RBP7.47□□□□□ -1.21
USH1C-210ENST00000534556 C14orf37Q86TY3 774 aa7.46□□□□□ -1.22
USH1C-210ENST00000534556 DCAF11Q8TEB1 546 aa7.46□□□□□ -1.22
USH1C-210ENST00000534556 ORAI2Q96SN7 254 aa7.46□□□□□ -1.22
USH1C-210ENST00000534556 KDM2AQ9Y2K7 1162 aa7.46□□□□□ -1.22
USH1C-210ENST00000534556 MARF1Q9Y4F3 1742 aaKnown RBP7.46□□□□□ -1.22
USH1C-210ENST00000534556 DLC1Q96QB1 1528 aa7.46□□□□□ -1.22
USH1C-210ENST00000534556 ATF3P18847 181 aa7.45□□□□□ -1.22
USH1C-210ENST00000534556 CADPS2Q86UW7 1296 aa7.45□□□□□ -1.22
USH1C-210ENST00000534556 ADGRB2O60241 1585 aa7.45□□□□□ -1.22
USH1C-210ENST00000534556 ABCA3Q99758 1704 aa7.44□□□□□ -1.22
USH1C-210ENST00000534556 TRPM3Q9HCF6 1732 aaPredicted RBP7.44□□□□□ -1.22
USH1C-210ENST00000534556 COL22A1Q8NFW1 1626 aaPredicted RBP7.43□□□□□ -1.22
USH1C-210ENST00000534556 NUTM2FA1L443 756 aa7.43□□□□□ -1.22
USH1C-210ENST00000534556 NBPF1Q3BBV0 1214 aa7.43□□□□□ -1.22
USH1C-210ENST00000534556 QRICH2Q9H0J4 1663 aa7.43□□□□□ -1.22
USH1C-210ENST00000534556 CRYBG1Q9Y4K1 1723 aa7.43□□□□□ -1.22
USH1C-210ENST00000534556 PXDNQ92626 1479 aa7.43□□□□□ -1.22
USH1C-210ENST00000534556 TOPAZ1Q8N9V7 1692 aa7.42□□□□□ -1.22
USH1C-210ENST00000534556 TRIM26Q12899 539 aaPredicted RBP7.42□□□□□ -1.22
USH1C-210ENST00000534556 SAFB2Q14151 953 aaKnown RBP eCLIP7.42□□□□□ -1.22
USH1C-210ENST00000534556 L3MBTL2Q969R5 705 aa7.42□□□□□ -1.22
USH1C-210ENST00000534556 PRAM1Q96QH2 718 aa7.42□□□□□ -1.22
USH1C-210ENST00000534556 TRAK1Q9UPV9 953 aa7.42□□□□□ -1.22
USH1C-210ENST00000534556 KIF1AQ12756 1690 aa7.41□□□□□ -1.22
USH1C-210ENST00000534556 SIRT1Q96EB6 747 aa7.41□□□□□ -1.22
USH1C-210ENST00000534556 PRR36Q9H6K5 1346 aa7.41□□□□□ -1.22
USH1C-210ENST00000534556 JCADQ9P266 1359 aa7.41□□□□□ -1.22
USH1C-210ENST00000534556 ALS2Q96Q42 1657 aa7.41□□□□□ -1.22
USH1C-210ENST00000534556 ITSN1Q15811 1721 aa7.41□□□□□ -1.22
USH1C-210ENST00000534556 NBPF8Q3BBV2 869 aa7.4□□□□□ -1.22
USH1C-210ENST00000534556 POTEAQ6S8J7 498 aa7.4□□□□□ -1.22
USH1C-210ENST00000534556 SOS2Q07890 1332 aaPredicted RBP7.4□□□□□ -1.22
USH1C-210ENST00000534556 PNPLA6Q8IY17 1366 aa7.4□□□□□ -1.22
USH1C-210ENST00000534556 EP400Q96L91 3159 aa7.4□□□□□ -1.23
USH1C-210ENST00000534556 MINK1Q8N4C8 1332 aaPredicted RBP7.39□□□□□ -1.23
USH1C-210ENST00000534556 XPCQ01831 940 aaPredicted RBP7.39□□□□□ -1.23
USH1C-210ENST00000534556 NEUROD1Q13562 356 aa7.39□□□□□ -1.23
USH1C-210ENST00000534556 HIRIP3Q9BW71 556 aaPredicted RBP7.39□□□□□ -1.23
USH1C-210ENST00000534556 FOXO3O43524 673 aa7.38□□□□□ -1.23
USH1C-210ENST00000534556 ESCO1Q5FWF5 840 aa7.38□□□□□ -1.23
USH1C-210ENST00000534556 TULP4Q9NRJ4 1543 aa7.37□□□□□ -1.23
USH1C-210ENST00000534556 ATP7BP35670 1465 aa7.37□□□□□ -1.23
USH1C-210ENST00000534556 STAC3Q96MF2 364 aa7.37□□□□□ -1.23
USH1C-210ENST00000534556 AKAP12Q02952 1782 aa7.37□□□□□ -1.23
USH1C-210ENST00000534556 PLCH1Q4KWH8 1693 aa7.37□□□□□ -1.23
USH1C-210ENST00000534556 SRCAPQ6ZRS2 3230 aa7.37□□□□□ -1.23
USH1C-210ENST00000534556 NUTM2BA6NNL0 878 aaPredicted RBP7.36□□□□□ -1.23
USH1C-210ENST00000534556 NUTM2EB1AL46 878 aaPredicted RBP7.36□□□□□ -1.23
USH1C-210ENST00000534556 NUTM2AQ8IVF1 878 aaPredicted RBP7.36□□□□□ -1.23
USH1C-210ENST00000534556 POGKQ9P215 609 aa7.36□□□□□ -1.23
USH1C-210ENST00000534556 BRWD3Q6RI45 1802 aa7.36□□□□□ -1.23
USH1C-210ENST00000534556 PHRF1Q9P1Y6 1649 aaKnown RBP7.35□□□□□ -1.23
USH1C-210ENST00000534556 SPATA31A6Q5VVP1 1343 aa7.35□□□□□ -1.23
USH1C-210ENST00000534556 WASLO00401 505 aaPredicted RBP7.35□□□□□ -1.23
USH1C-210ENST00000534556 PMFBP1Q8TBY8 1022 aa7.35□□□□□ -1.23
USH1C-210ENST00000534556 LRRC59Q96AG4 307 aaKnown RBP7.35□□□□□ -1.23
USH1C-210ENST00000534556 NRAPQ86VF7 1730 aa7.35□□□□□ -1.23
USH1C-210ENST00000534556 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.35□□□□□ -1.23
USH1C-210ENST00000534556 ANKARQ7Z5J8 1434 aa7.35□□□□□ -1.23
USH1C-210ENST00000534556 SPATA31A3Q5VYP0 1347 aa7.34□□□□□ -1.23
USH1C-210ENST00000534556 RGPD5Q99666 1765 aa7.34□□□□□ -1.23
USH1C-210ENST00000534556 KRT28Q7Z3Y7 464 aa7.34□□□□□ -1.23
USH1C-210ENST00000534556 PHF8Q9UPP1 1060 aa7.34□□□□□ -1.23
USH1C-210ENST00000534556 GPRASP1Q5JY77 1395 aa7.33□□□□□ -1.24
USH1C-210ENST00000534556 NPHP3Q7Z494 1330 aa7.33□□□□□ -1.24
USH1C-210ENST00000534556 RALGAPBQ86X10 1494 aa7.33□□□□□ -1.24
USH1C-210ENST00000534556 PHF23Q9BUL5 403 aaPredicted RBP7.33□□□□□ -1.24
USH1C-210ENST00000534556 CDK19Q9BWU1 502 aa7.33□□□□□ -1.24
USH1C-210ENST00000534556 PCGF6Q9BYE7 350 aa7.33□□□□□ -1.24
USH1C-210ENST00000534556 MON2Q7Z3U7 1717 aa7.32□□□□□ -1.24
USH1C-210ENST00000534556 NWD2Q9ULI1 1742 aa7.32□□□□□ -1.24
USH1C-210ENST00000534556 AFF2P51816 1311 aa7.32□□□□□ -1.24
USH1C-210ENST00000534556 PIK3C2AO00443 1686 aa7.32□□□□□ -1.24
USH1C-210ENST00000534556 ADAMTS2O95450 1211 aa7.32□□□□□ -1.24
USH1C-210ENST00000534556 CABLES1Q8TDN4 633 aa7.32□□□□□ -1.24
USH1C-210ENST00000534556 NUDT16Q96DE0 195 aaKnown RBP7.32□□□□□ -1.24
USH1C-210ENST00000534556 TNS3Q68CZ2 1445 aa7.32□□□□□ -1.24
USH1C-210ENST00000534556 GLI3P10071 1580 aa7.32□□□□□ -1.24
USH1C-210ENST00000534556 NRKQ7Z2Y5 1582 aa7.32□□□□□ -1.24
USH1C-210ENST00000534556 BCL9LQ86UU0 1499 aa7.31□□□□□ -1.24
USH1C-210ENST00000534556 CABP2Q9NPB3 220 aa7.31□□□□□ -1.24
USH1C-210ENST00000534556 CENPJQ9HC77 1338 aaPredicted RBP7.3□□□□□ -1.24
USH1C-210ENST00000534556 PLEKHG5O94827 1062 aa7.3□□□□□ -1.24
USH1C-210ENST00000534556 C8orf37Q96NL8 207 aa7.3□□□□□ -1.24
USH1C-210ENST00000534556 COL18A1P39060 1754 aa7.3□□□□□ -1.24
USH1C-210ENST00000534556 SBNO1A3KN83 1393 aa7.3□□□□□ -1.24
USH1C-210ENST00000534556 POLR3AO14802 1390 aaPredicted RBP7.3□□□□□ -1.24
USH1C-210ENST00000534556 ROCK2O75116 1388 aaKnown RBP7.3□□□□□ -1.24
USH1C-210ENST00000534556 ATRNO75882 1429 aa7.29□□□□□ -1.24
USH1C-210ENST00000534556 COL14A1Q05707 1796 aaKnown RBP7.29□□□□□ -1.24
USH1C-210ENST00000534556 SLIT2O94813 1529 aa7.29□□□□□ -1.24
USH1C-210ENST00000534556 MEX3CQ5U5Q3 659 aaKnown RBP7.29□□□□□ -1.24
USH1C-210ENST00000534556 FNBP4Q8N3X1 1017 aaPredicted RBP7.29□□□□□ -1.24
USH1C-210ENST00000534556 TONSLQ96HA7 1378 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms