RNA–Protein interactions for RNA: ENST00000534442.5

ECHDC1-223, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 5

Gene ECHDC1, Length 577 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-223ENST00000534442 ONECUT3O60422 494 aaPredicted RBP8.37□□□□□ -1.07
ECHDC1-223ENST00000534442 RAPGEF3O95398 923 aa8.37□□□□□ -1.07
ECHDC1-223ENST00000534442 COL9A1P20849 921 aa8.37□□□□□ -1.07
ECHDC1-223ENST00000534442 CDCA7LQ96GN5 454 aa8.37□□□□□ -1.07
ECHDC1-223ENST00000534442 FHAD1B1AJZ9 1412 aa8.37□□□□□ -1.07
ECHDC1-223ENST00000534442 PTPRGP23470 1445 aa8.37□□□□□ -1.07
ECHDC1-223ENST00000534442 LRP5O75197 1615 aa8.36□□□□□ -1.07
ECHDC1-223ENST00000534442 ARHGEF40Q8TER5 1519 aa8.36□□□□□ -1.07
ECHDC1-223ENST00000534442 MLECQ14165 292 aa8.36□□□□□ -1.07
ECHDC1-223ENST00000534442 CUX1P39880 1505 aa8.35□□□□□ -1.07
ECHDC1-223ENST00000534442 FANCAO15360 1455 aa8.35□□□□□ -1.07
ECHDC1-223ENST00000534442 SKIV2LQ15477 1246 aaKnown RBP8.35□□□□□ -1.07
ECHDC1-223ENST00000534442 ZNF710Q8N1W2 664 aa8.35□□□□□ -1.07
ECHDC1-223ENST00000534442 RSPH6AQ9H0K4 717 aa8.35□□□□□ -1.07
ECHDC1-223ENST00000534442 SCUBE2Q9NQ36 999 aa8.35□□□□□ -1.07
ECHDC1-223ENST00000534442 PTPRKQ15262 1439 aa8.35□□□□□ -1.07
ECHDC1-223ENST00000534442 BCL2L12Q9HB09 334 aa8.34□□□□□ -1.07
ECHDC1-223ENST00000534442 TOP2AP11388 1531 aaKnown RBP8.34□□□□□ -1.08
ECHDC1-223ENST00000534442 C3orf80F5H4A9 247 aa8.33□□□□□ -1.08
ECHDC1-223ENST00000534442 FLIIQ13045 1269 aa8.33□□□□□ -1.08
ECHDC1-223ENST00000534442 PPP4R3BQ5MIZ7 849 aa8.33□□□□□ -1.08
ECHDC1-223ENST00000534442 MAMSTRQ6ZN01 415 aa8.33□□□□□ -1.08
ECHDC1-223ENST00000534442 PROCA1Q8NCQ7 364 aaPredicted RBP8.33□□□□□ -1.08
ECHDC1-223ENST00000534442 RBM46Q8TBY0 533 aaKnown RBP8.33□□□□□ -1.08
ECHDC1-223ENST00000534442 EYA1Q99502 592 aa8.33□□□□□ -1.08
ECHDC1-223ENST00000534442 SIGLEC1Q9BZZ2 1709 aa8.33□□□□□ -1.08
ECHDC1-223ENST00000534442 RAPGEF6Q8TEU7 1601 aa8.32□□□□□ -1.08
ECHDC1-223ENST00000534442 UHRF1BP1LA0JNW5 1464 aa8.32□□□□□ -1.08
ECHDC1-223ENST00000534442 WDR7Q9Y4E6 1490 aa8.32□□□□□ -1.08
ECHDC1-223ENST00000534442 FRMPD1Q5SYB0 1578 aa8.32□□□□□ -1.08
ECHDC1-223ENST00000534442 TSKSQ9UJT2 592 aa8.32□□□□□ -1.08
ECHDC1-223ENST00000534442 LRRC7Q96NW7 1537 aa8.32□□□□□ -1.08
ECHDC1-223ENST00000534442 ZCCHC11Q5TAX3 1644 aaKnown RBP8.32□□□□□ -1.08
ECHDC1-223ENST00000534442 KDM5BQ9UGL1 1544 aa8.31□□□□□ -1.08
ECHDC1-223ENST00000534442 RCCD1A6NED2 376 aa8.31□□□□□ -1.08
ECHDC1-223ENST00000534442 MYSM1Q5VVJ2 828 aa8.31□□□□□ -1.08
ECHDC1-223ENST00000534442 POLR3EQ9NVU0 708 aa8.31□□□□□ -1.08
ECHDC1-223ENST00000534442 ABCA10Q8WWZ4 1543 aa8.3□□□□□ -1.08
ECHDC1-223ENST00000534442 CAMSAP1Q5T5Y3 1602 aa8.3□□□□□ -1.08
ECHDC1-223ENST00000534442 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.3□□□□□ -1.08
ECHDC1-223ENST00000534442 PSDA5PKW4 1024 aaPredicted RBP8.3□□□□□ -1.08
ECHDC1-223ENST00000534442 PPP1R3GB7ZBB8 358 aa8.3□□□□□ -1.08
ECHDC1-223ENST00000534442 HOXB1P14653 301 aaPredicted RBP8.3□□□□□ -1.08
ECHDC1-223ENST00000534442 C1QTNF8P60827 252 aa8.3□□□□□ -1.08
ECHDC1-223ENST00000534442 HOMEZQ8IX15 550 aa8.3□□□□□ -1.08
ECHDC1-223ENST00000534442 TBC1D2Q9BYX2 928 aa8.29□□□□□ -1.08
ECHDC1-223ENST00000534442 SETD1BQ9UPS6 1966 aaKnown RBP8.29□□□□□ -1.08
ECHDC1-223ENST00000534442 CPS1P31327 1500 aa8.29□□□□□ -1.08
ECHDC1-223ENST00000534442 PTPREP23469 700 aa8.28□□□□□ -1.08
ECHDC1-223ENST00000534442 NUDT18Q6ZVK8 323 aa8.28□□□□□ -1.08
ECHDC1-223ENST00000534442 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.28□□□□□ -1.08
ECHDC1-223ENST00000534442 MCM6Q14566 821 aa8.27□□□□□ -1.09
ECHDC1-223ENST00000534442 C1orf115Q9H7X2 142 aa8.27□□□□□ -1.09
ECHDC1-223ENST00000534442 ARHGEF12Q9NZN5 1544 aa8.27□□□□□ -1.09
ECHDC1-223ENST00000534442 TRIM6-TRIM34B2RNG4 842 aa8.26□□□□□ -1.09
ECHDC1-223ENST00000534442 SNPHO15079 494 aa8.26□□□□□ -1.09
ECHDC1-223ENST00000534442 FBXO31Q5XUX0 539 aaPredicted RBP8.26□□□□□ -1.09
ECHDC1-223ENST00000534442 TATDN2Q93075 761 aa8.26□□□□□ -1.09
ECHDC1-223ENST00000534442 UACAQ9BZF9 1416 aa8.26□□□□□ -1.09
ECHDC1-223ENST00000534442 CCDC88BA6NC98 1476 aa8.26□□□□□ -1.09
ECHDC1-223ENST00000534442 CD46P15529 392 aa8.25□□□□□ -1.09
ECHDC1-223ENST00000534442 CLK2P49760 499 aaKnown RBP8.25□□□□□ -1.09
ECHDC1-223ENST00000534442 SPIRE2Q8WWL2 714 aa8.25□□□□□ -1.09
ECHDC1-223ENST00000534442 KCNH8Q96L42 1107 aa8.25□□□□□ -1.09
ECHDC1-223ENST00000534442 PNMA3Q9UL41 463 aa8.25□□□□□ -1.09
ECHDC1-223ENST00000534442 A6NJR5 290 aa8.24□□□□□ -1.09
ECHDC1-223ENST00000534442 DNAJB2P25686 324 aa8.24□□□□□ -1.09
ECHDC1-223ENST00000534442 PROX2Q3B8N5 592 aa8.24□□□□□ -1.09
ECHDC1-223ENST00000534442 CLUAP1Q96AJ1 413 aa8.24□□□□□ -1.09
ECHDC1-223ENST00000534442 LIMD1Q9UGP4 676 aa8.24□□□□□ -1.09
ECHDC1-223ENST00000534442 CDK12Q9NYV4 1490 aaPredicted RBP8.24□□□□□ -1.09
ECHDC1-223ENST00000534442 AKNAQ7Z591 1439 aa8.23□□□□□ -1.09
ECHDC1-223ENST00000534442 NBPF26B4DH59 902 aa8.23□□□□□ -1.09
ECHDC1-223ENST00000534442 SMAPO00193 183 aa8.23□□□□□ -1.09
ECHDC1-223ENST00000534442 RXRBP28702 533 aa8.23□□□□□ -1.09
ECHDC1-223ENST00000534442 PACS2Q86VP3 889 aa8.23□□□□□ -1.09
ECHDC1-223ENST00000534442 TMEM134Q9H6X4 195 aa8.23□□□□□ -1.09
ECHDC1-223ENST00000534442 ATP1B4Q9UN42 357 aaPredicted RBP8.23□□□□□ -1.09
ECHDC1-223ENST00000534442 TNIKQ9UKE5 1360 aa8.22□□□□□ -1.09
ECHDC1-223ENST00000534442 DIXDC1Q155Q3 683 aa8.22□□□□□ -1.09
ECHDC1-223ENST00000534442 KCNK17Q96T54 332 aa8.22□□□□□ -1.09
ECHDC1-223ENST00000534442 PHLDB1Q86UU1 1377 aa8.22□□□□□ -1.09
ECHDC1-223ENST00000534442 ARID3CA6NKF2 412 aa8.21□□□□□ -1.1
ECHDC1-223ENST00000534442 DDX11L8A8MPP1 907 aa8.21□□□□□ -1.1
ECHDC1-223ENST00000534442 UBTFP17480 764 aaKnown RBP8.21□□□□□ -1.1
ECHDC1-223ENST00000534442 ZNF772Q68DY9 489 aaPredicted RBP8.21□□□□□ -1.1
ECHDC1-223ENST00000534442 RIC3Q7Z5B4 369 aa8.21□□□□□ -1.1
ECHDC1-223ENST00000534442 OTUD5Q96G74 571 aa8.21□□□□□ -1.1
ECHDC1-223ENST00000534442 SPTLC1O15269 473 aa8.2□□□□□ -1.1
ECHDC1-223ENST00000534442 TRAK2O60296 914 aa8.2□□□□□ -1.1
ECHDC1-223ENST00000534442 RFC5P40937 340 aa8.2□□□□□ -1.1
ECHDC1-223ENST00000534442 SULF1Q8IWU6 871 aa8.2□□□□□ -1.1
ECHDC1-223ENST00000534442 ZNF784Q8NCA9 323 aaPredicted RBP8.2□□□□□ -1.1
ECHDC1-223ENST00000534442 SHANK2Q9UPX8 1470 aa8.19□□□□□ -1.1
ECHDC1-223ENST00000534442 MOXD2PA6NHM9 499 aa8.19□□□□□ -1.1
ECHDC1-223ENST00000534442 NUTM2BA6NNL0 878 aaPredicted RBP8.19□□□□□ -1.1
ECHDC1-223ENST00000534442 NUTM2EB1AL46 878 aaPredicted RBP8.19□□□□□ -1.1
ECHDC1-223ENST00000534442 TUSC1Q2TAM9 212 aa8.19□□□□□ -1.1
ECHDC1-223ENST00000534442 NUTM2DQ5VT03 806 aaPredicted RBP8.19□□□□□ -1.1
ECHDC1-223ENST00000534442 PPP2R2DQ66LE6 453 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms