RNA–Protein interactions for RNA: ENST00000533946.5

SSBP3-215, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 3

Gene SSBP3, Length 431 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-215ENST00000533946 NUTM2EB1AL46 878 aaPredicted RBP14.21□□□□□ -0.13
SSBP3-215ENST00000533946 XPCQ01831 940 aaPredicted RBP14.21□□□□□ -0.13
SSBP3-215ENST00000533946 NUTM2AQ8IVF1 878 aaPredicted RBP14.21□□□□□ -0.13
SSBP3-215ENST00000533946 RGPD8O14715 1765 aaPredicted RBP14.21□□□□□ -0.13
SSBP3-215ENST00000533946 DCAF11Q8TEB1 546 aa14.2□□□□□ -0.14
SSBP3-215ENST00000533946 TECPR2O15040 1411 aa14.2□□□□□ -0.14
SSBP3-215ENST00000533946 ABCC11Q96J66 1382 aa14.2□□□□□ -0.14
SSBP3-215ENST00000533946 MYOM2P54296 1465 aa14.19□□□□□ -0.14
SSBP3-215ENST00000533946 KNDC1Q76NI1 1749 aa14.19□□□□□ -0.14
SSBP3-215ENST00000533946 ADGRB1O14514 1584 aa14.19□□□□□ -0.14
SSBP3-215ENST00000533946 HRCP23327 699 aa14.19□□□□□ -0.14
SSBP3-215ENST00000533946 SHPRHQ149N8 1683 aa14.19□□□□□ -0.14
SSBP3-215ENST00000533946 SIN3AQ96ST3 1273 aa14.18□□□□□ -0.14
SSBP3-215ENST00000533946 PRAM1Q96QH2 718 aa14.17□□□□□ -0.14
SSBP3-215ENST00000533946 ESCO1Q5FWF5 840 aa14.16□□□□□ -0.14
SSBP3-215ENST00000533946 TRAK1Q9UPV9 953 aa14.16□□□□□ -0.14
SSBP3-215ENST00000533946 FMN2Q9NZ56 1722 aa14.15□□□□□ -0.14
SSBP3-215ENST00000533946 CDC42BPGQ6DT37 1551 aa14.15□□□□□ -0.14
SSBP3-215ENST00000533946 PNPLA6Q8IY17 1366 aa14.15□□□□□ -0.14
SSBP3-215ENST00000533946 HIRIP3Q9BW71 556 aaPredicted RBP14.15□□□□□ -0.14
SSBP3-215ENST00000533946 LAMC1P11047 1609 aa14.15□□□□□ -0.14
SSBP3-215ENST00000533946 FOXO3O43524 673 aa14.14□□□□□ -0.15
SSBP3-215ENST00000533946 NBPF1Q3BBV0 1214 aa14.14□□□□□ -0.15
SSBP3-215ENST00000533946 USP32Q8NFA0 1604 aa14.14□□□□□ -0.15
SSBP3-215ENST00000533946 SOS2Q07890 1332 aaPredicted RBP14.14□□□□□ -0.15
SSBP3-215ENST00000533946 PXDNQ92626 1479 aa14.12□□□□□ -0.15
SSBP3-215ENST00000533946 ADAMTS2O95450 1211 aa14.11□□□□□ -0.15
SSBP3-215ENST00000533946 SPATA31A6Q5VVP1 1343 aa14.11□□□□□ -0.15
SSBP3-215ENST00000533946 MINK1Q8N4C8 1332 aaPredicted RBP14.11□□□□□ -0.15
SSBP3-215ENST00000533946 PRR36Q9H6K5 1346 aa14.11□□□□□ -0.15
SSBP3-215ENST00000533946 PLEKHG5O94827 1062 aa14.1□□□□□ -0.15
SSBP3-215ENST00000533946 LRRC59Q96AG4 307 aaKnown RBP14.1□□□□□ -0.15
SSBP3-215ENST00000533946 MEX3CQ5U5Q3 659 aaKnown RBP14.09□□□□□ -0.15
SSBP3-215ENST00000533946 SIRT1Q96EB6 747 aa14.09□□□□□ -0.15
SSBP3-215ENST00000533946 AFF2P51816 1311 aa14.09□□□□□ -0.15
SSBP3-215ENST00000533946 ACIN1Q9UKV3 1341 aaKnown RBP14.09□□□□□ -0.15
SSBP3-215ENST00000533946 ARHGEF28Q8N1W1 1705 aaKnown RBP14.08□□□□□ -0.16
SSBP3-215ENST00000533946 NEUROD1Q13562 356 aa14.08□□□□□ -0.16
SSBP3-215ENST00000533946 PMFBP1Q8TBY8 1022 aa14.08□□□□□ -0.16
SSBP3-215ENST00000533946 L3MBTL2Q969R5 705 aa14.08□□□□□ -0.16
SSBP3-215ENST00000533946 C8orf37Q96NL8 207 aa14.08□□□□□ -0.16
SSBP3-215ENST00000533946 DLC1Q96QB1 1528 aa14.07□□□□□ -0.16
SSBP3-215ENST00000533946 POGKQ9P215 609 aa14.07□□□□□ -0.16
SSBP3-215ENST00000533946 CABLES1Q8TDN4 633 aa14.06□□□□□ -0.16
SSBP3-215ENST00000533946 KRT28Q7Z3Y7 464 aa14.04□□□□□ -0.16
SSBP3-215ENST00000533946 PHF8Q9UPP1 1060 aa14.04□□□□□ -0.16
SSBP3-215ENST00000533946 COL22A1Q8NFW1 1626 aaPredicted RBP14.04□□□□□ -0.16
SSBP3-215ENST00000533946 NBPF8Q3BBV2 869 aa14.03□□□□□ -0.16
SSBP3-215ENST00000533946 NPHP3Q7Z494 1330 aa14.03□□□□□ -0.16
SSBP3-215ENST00000533946 ADGRB2O60241 1585 aa14.02□□□□□ -0.16
SSBP3-215ENST00000533946 SPATA31A3Q5VYP0 1347 aa14.02□□□□□ -0.17
SSBP3-215ENST00000533946 WASLO00401 505 aaPredicted RBP14.01□□□□□ -0.17
SSBP3-215ENST00000533946 NGLY1Q96IV0 654 aa14□□□□□ -0.17
SSBP3-215ENST00000533946 QTRT2Q9H974 415 aaKnown RBP14□□□□□ -0.17
SSBP3-215ENST00000533946 TRPM3Q9HCF6 1732 aaPredicted RBP14□□□□□ -0.17
SSBP3-215ENST00000533946 EP400Q96L91 3159 aa14□□□□□ -0.17
SSBP3-215ENST00000533946 KIF1AQ12756 1690 aa13.99□□□□□ -0.17
SSBP3-215ENST00000533946 KIAA1210Q9ULL0 1709 aa13.98□□□□□ -0.17
SSBP3-215ENST00000533946 MARF1Q9Y4F3 1742 aaKnown RBP13.98□□□□□ -0.17
SSBP3-215ENST00000533946 ZNF772Q68DY9 489 aaPredicted RBP13.98□□□□□ -0.17
SSBP3-215ENST00000533946 CDK19Q9BWU1 502 aa13.98□□□□□ -0.17
SSBP3-215ENST00000533946 BCL9LQ86UU0 1499 aa13.98□□□□□ -0.17
SSBP3-215ENST00000533946 TULP4Q9NRJ4 1543 aa13.97□□□□□ -0.17
SSBP3-215ENST00000533946 LMOD2Q6P5Q4 547 aa13.97□□□□□ -0.17
SSBP3-215ENST00000533946 NUDT16Q96DE0 195 aaKnown RBP13.97□□□□□ -0.17
SSBP3-215ENST00000533946 ABCA3Q99758 1704 aa13.97□□□□□ -0.17
SSBP3-215ENST00000533946 ATP7BP35670 1465 aa13.97□□□□□ -0.17
SSBP3-215ENST00000533946 RGS12O14924 1447 aa13.97□□□□□ -0.17
SSBP3-215ENST00000533946 TRPM1Q7Z4N2 1603 aa13.97□□□□□ -0.17
SSBP3-215ENST00000533946 RXRBP28702 533 aa13.96□□□□□ -0.17
SSBP3-215ENST00000533946 FNBP4Q8N3X1 1017 aaPredicted RBP13.96□□□□□ -0.17
SSBP3-215ENST00000533946 USP21Q9UK80 565 aa13.96□□□□□ -0.17
SSBP3-215ENST00000533946 PSME1Q06323 249 aa13.95□□□□□ -0.18
SSBP3-215ENST00000533946 TRIM26Q12899 539 aaPredicted RBP13.95□□□□□ -0.18
SSBP3-215ENST00000533946 NUTM2GQ5VZR2 741 aa13.95□□□□□ -0.18
SSBP3-215ENST00000533946 CABP2Q9NPB3 220 aa13.95□□□□□ -0.18
SSBP3-215ENST00000533946 TNS3Q68CZ2 1445 aa13.95□□□□□ -0.18
SSBP3-215ENST00000533946 ANKARQ7Z5J8 1434 aa13.95□□□□□ -0.18
SSBP3-215ENST00000533946 ALS2Q96Q42 1657 aa13.95□□□□□ -0.18
SSBP3-215ENST00000533946 STAC3Q96MF2 364 aa13.94□□□□□ -0.18
SSBP3-215ENST00000533946 ATRNO75882 1429 aa13.93□□□□□ -0.18
SSBP3-215ENST00000533946 QRICH2Q9H0J4 1663 aa13.93□□□□□ -0.18
SSBP3-215ENST00000533946 TOPAZ1Q8N9V7 1692 aa13.92□□□□□ -0.18
SSBP3-215ENST00000533946 UPF1Q92900 1129 aaKnown RBP eCLIP13.92□□□□□ -0.183e-13■□□□□ 10
SSBP3-215ENST00000533946 CRYBG1Q9Y4K1 1723 aa13.92□□□□□ -0.18
SSBP3-215ENST00000533946 FAM83GA6ND36 823 aa13.91□□□□□ -0.18
SSBP3-215ENST00000533946 RBM6P78332 1123 aaKnown RBP13.91□□□□□ -0.18
SSBP3-215ENST00000533946 NGDNQ8NEJ9 315 aaKnown RBP13.91□□□□□ -0.18
SSBP3-215ENST00000533946 SBNO1A3KN83 1393 aa13.91□□□□□ -0.18
SSBP3-215ENST00000533946 ACEP12821 1306 aa13.9□□□□□ -0.18
SSBP3-215ENST00000533946 SLIT2O94813 1529 aa13.9□□□□□ -0.18
SSBP3-215ENST00000533946 PAK3O75914 559 aaPredicted RBP13.9□□□□□ -0.18
SSBP3-215ENST00000533946 GLI3P10071 1580 aa13.9□□□□□ -0.18
SSBP3-215ENST00000533946 CENPJQ9HC77 1338 aaPredicted RBP13.9□□□□□ -0.19
SSBP3-215ENST00000533946 PLCH1Q4KWH8 1693 aa13.89□□□□□ -0.19
SSBP3-215ENST00000533946 ITSN1Q15811 1721 aa13.87□□□□□ -0.19
SSBP3-215ENST00000533946 SRPK2P78362 688 aaKnown RBP13.87□□□□□ -0.19
SSBP3-215ENST00000533946 ROCK2O75116 1388 aaKnown RBP13.86□□□□□ -0.19
SSBP3-215ENST00000533946 SRCAPQ6ZRS2 3230 aa13.86□□□□□ -0.19
SSBP3-215ENST00000533946 BRWD3Q6RI45 1802 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms