RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 NGLY1Q96IV0 654 aa23.71■■□□□ 1.39
CHMP4A-207ENST00000533523 ORAI2Q96SN7 254 aa23.71■■□□□ 1.39
CHMP4A-207ENST00000533523 FNBP4Q8N3X1 1017 aaPredicted RBP23.69■■□□□ 1.38
CHMP4A-207ENST00000533523 GLI3P10071 1580 aa23.69■■□□□ 1.38
CHMP4A-207ENST00000533523 VGFO15240 615 aaPredicted RBP23.68■■□□□ 1.38
CHMP4A-207ENST00000533523 USP21Q9UK80 565 aa23.68■■□□□ 1.38
CHMP4A-207ENST00000533523 PXDNQ92626 1479 aa23.68■■□□□ 1.38
CHMP4A-207ENST00000533523 PRAG1Q86YV5 1406 aa23.67■■□□□ 1.38
CHMP4A-207ENST00000533523 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.67■■□□□ 1.38
CHMP4A-207ENST00000533523 SLC4A1APQ9BWU0 796 aaKnown RBP23.66■■□□□ 1.38
CHMP4A-207ENST00000533523 CDC42BPGQ6DT37 1551 aa23.65■■□□□ 1.38
CHMP4A-207ENST00000533523 IFT172Q9UG01 1749 aa23.64■■□□□ 1.37
CHMP4A-207ENST00000533523 RPGRIP1LQ68CZ1 1315 aa23.63■■□□□ 1.37
CHMP4A-207ENST00000533523 TRPC5Q9UL62 973 aaPredicted RBP23.62■■□□□ 1.37
CHMP4A-207ENST00000533523 LRP5O75197 1615 aa23.6■■□□□ 1.37
CHMP4A-207ENST00000533523 KNDC1Q76NI1 1749 aa23.59■■□□□ 1.37
CHMP4A-207ENST00000533523 ZRANB1Q9UGI0 708 aa23.59■■□□□ 1.37
CHMP4A-207ENST00000533523 CCDC144AA2RUR9 1427 aa23.58■■□□□ 1.36
CHMP4A-207ENST00000533523 FOXD1Q16676 465 aa23.57■■□□□ 1.36
CHMP4A-207ENST00000533523 RALGAPBQ86X10 1494 aa23.56■■□□□ 1.36
CHMP4A-207ENST00000533523 SLIT2O94813 1529 aa23.54■■□□□ 1.36
CHMP4A-207ENST00000533523 ABCA3Q99758 1704 aa23.53■■□□□ 1.36
CHMP4A-207ENST00000533523 ADGRF5Q8IZF2 1346 aa23.53■■□□□ 1.36
CHMP4A-207ENST00000533523 XPCQ01831 940 aaPredicted RBP23.52■■□□□ 1.36
CHMP4A-207ENST00000533523 FMN2Q9NZ56 1722 aa23.52■■□□□ 1.36
CHMP4A-207ENST00000533523 NPHP3Q7Z494 1330 aa23.52■■□□□ 1.36
CHMP4A-207ENST00000533523 USP32Q8NFA0 1604 aa23.51■■□□□ 1.35
CHMP4A-207ENST00000533523 ESCO1Q5FWF5 840 aa23.51■■□□□ 1.35
CHMP4A-207ENST00000533523 DEFB132Q7Z7B7 95 aa23.51■■□□□ 1.35
CHMP4A-207ENST00000533523 PLCH1Q4KWH8 1693 aa23.51■■□□□ 1.35
CHMP4A-207ENST00000533523 STK26Q9P289 416 aa23.5■■□□□ 1.35
CHMP4A-207ENST00000533523 KIF1AQ12756 1690 aa23.5■■□□□ 1.35
CHMP4A-207ENST00000533523 TECPR2O15040 1411 aa23.5■■□□□ 1.35
CHMP4A-207ENST00000533523 SPATA31E1Q6ZUB1 1445 aa23.5■■□□□ 1.35
CHMP4A-207ENST00000533523 RGL3Q3MIN7 710 aa23.49■■□□□ 1.35
CHMP4A-207ENST00000533523 GJD4Q96KN9 370 aaPredicted RBP23.49■■□□□ 1.35
CHMP4A-207ENST00000533523 BLMP54132 1417 aaPredicted RBP23.49■■□□□ 1.35
CHMP4A-207ENST00000533523 RGPD8O14715 1765 aaPredicted RBP23.48■■□□□ 1.35
CHMP4A-207ENST00000533523 ANKRD30BQ9BXX2 1392 aa23.48■■□□□ 1.35
CHMP4A-207ENST00000533523 LRPPRCP42704 1394 aaKnown RBP23.47■■□□□ 1.35
CHMP4A-207ENST00000533523 NUTM2FA1L443 756 aa23.46■■□□□ 1.35
CHMP4A-207ENST00000533523 PIK3C2GO75747 1445 aa23.46■■□□□ 1.35
CHMP4A-207ENST00000533523 WAPLQ7Z5K2 1190 aa23.45■■□□□ 1.34
CHMP4A-207ENST00000533523 PLEKHH1Q9ULM0 1364 aa23.44■■□□□ 1.34
CHMP4A-207ENST00000533523 CCDC125Q86Z20 511 aa23.44■■□□□ 1.34
CHMP4A-207ENST00000533523 FOXO3O43524 673 aa23.43■■□□□ 1.34
CHMP4A-207ENST00000533523 TMEM132EQ6IEE7 984 aa23.42■■□□□ 1.34
CHMP4A-207ENST00000533523 NRAPQ86VF7 1730 aa23.42■■□□□ 1.34
CHMP4A-207ENST00000533523 YTHDC2Q9H6S0 1430 aaKnown RBP23.42■■□□□ 1.34
CHMP4A-207ENST00000533523 MPHOSPH9Q99550 1183 aa23.41■■□□□ 1.34
CHMP4A-207ENST00000533523 NWD2Q9ULI1 1742 aa23.41■■□□□ 1.34
CHMP4A-207ENST00000533523 ABCC11Q96J66 1382 aa23.4■■□□□ 1.34
CHMP4A-207ENST00000533523 UNC5CLQ8IV45 518 aa23.38■■□□□ 1.33
CHMP4A-207ENST00000533523 TNS1Q9HBL0 1735 aaKnown RBP23.36■■□□□ 1.33
CHMP4A-207ENST00000533523 SPATA31A3Q5VYP0 1347 aa23.35■■□□□ 1.33
CHMP4A-207ENST00000533523 PSDA5PKW4 1024 aaPredicted RBP23.33■■□□□ 1.33
CHMP4A-207ENST00000533523 NRXN1Q9ULB1 1477 aa23.32■■□□□ 1.32
CHMP4A-207ENST00000533523 SEPT12Q8IYM1 358 aa23.32■■□□□ 1.32
CHMP4A-207ENST00000533523 TNS3Q68CZ2 1445 aa23.32■■□□□ 1.32
CHMP4A-207ENST00000533523 CABLES1Q8TDN4 633 aa23.29■■□□□ 1.32
CHMP4A-207ENST00000533523 TRPM3Q9HCF6 1732 aaPredicted RBP23.29■■□□□ 1.32
CHMP4A-207ENST00000533523 CRYBG1Q9Y4K1 1723 aa23.29■■□□□ 1.32
CHMP4A-207ENST00000533523 DHX57Q6P158 1386 aaKnown RBP23.28■■□□□ 1.32
CHMP4A-207ENST00000533523 RGPD1P0DJD0 1748 aa23.28■■□□□ 1.32
CHMP4A-207ENST00000533523 ONECUT3O60422 494 aaPredicted RBP23.28■■□□□ 1.32
CHMP4A-207ENST00000533523 HRCP23327 699 aa23.28■■□□□ 1.32
CHMP4A-207ENST00000533523 HAP1P54257 671 aaPredicted RBP23.28■■□□□ 1.32
CHMP4A-207ENST00000533523 SAFB2Q14151 953 aaKnown RBP eCLIP23.28■■□□□ 1.32
CHMP4A-207ENST00000533523 KRT28Q7Z3Y7 464 aa23.28■■□□□ 1.32
CHMP4A-207ENST00000533523 PLEKHG5O94827 1062 aa23.27■■□□□ 1.32
CHMP4A-207ENST00000533523 C14orf93Q9H972 538 aaKnown RBP23.27■■□□□ 1.32
CHMP4A-207ENST00000533523 ADGRB2O60241 1585 aa23.27■■□□□ 1.32
CHMP4A-207ENST00000533523 VPS72Q15906 364 aa23.26■■□□□ 1.31
CHMP4A-207ENST00000533523 CFAP70Q5T0N1 1121 aa23.26■■□□□ 1.31
CHMP4A-207ENST00000533523 PHF8Q9UPP1 1060 aa23.26■■□□□ 1.31
CHMP4A-207ENST00000533523 THSD7AQ9UPZ6 1657 aa23.25■■□□□ 1.31
CHMP4A-207ENST00000533523 DLC1Q96QB1 1528 aa23.25■■□□□ 1.31
CHMP4A-207ENST00000533523 PRAM1Q96QH2 718 aa23.24■■□□□ 1.31
CHMP4A-207ENST00000533523 ALS2Q96Q42 1657 aa23.24■■□□□ 1.31
CHMP4A-207ENST00000533523 SIRT1Q96EB6 747 aa23.23■■□□□ 1.31
CHMP4A-207ENST00000533523 PSME1Q06323 249 aa23.22■■□□□ 1.31
CHMP4A-207ENST00000533523 LMOD2Q6P5Q4 547 aa23.22■■□□□ 1.31
CHMP4A-207ENST00000533523 KRT27Q7Z3Y8 459 aa23.21■■□□□ 1.31
CHMP4A-207ENST00000533523 ACIN1Q9UKV3 1341 aaKnown RBP23.21■■□□□ 1.31
CHMP4A-207ENST00000533523 SBNO1A3KN83 1393 aa23.21■■□□□ 1.31
CHMP4A-207ENST00000533523 ARHGEF10O15013 1369 aa23.21■■□□□ 1.31
CHMP4A-207ENST00000533523 ANKARQ7Z5J8 1434 aa23.21■■□□□ 1.31
CHMP4A-207ENST00000533523 ADGRB1O14514 1584 aa23.2■■□□□ 1.3
CHMP4A-207ENST00000533523 POGKQ9P215 609 aa23.2■■□□□ 1.3
CHMP4A-207ENST00000533523 FAM182BQ5T319 152 aa23.19■■□□□ 1.3
CHMP4A-207ENST00000533523 RAB3GAP2Q9H2M9 1393 aa23.18■■□□□ 1.3
CHMP4A-207ENST00000533523 FAM83GA6ND36 823 aa23.18■■□□□ 1.3
CHMP4A-207ENST00000533523 CCDC9Q9Y3X0 531 aaKnown RBP23.18■■□□□ 1.3
CHMP4A-207ENST00000533523 RREB1Q92766 1687 aa23.16■■□□□ 1.3
CHMP4A-207ENST00000533523 PMFBP1Q8TBY8 1022 aa23.16■■□□□ 1.3
CHMP4A-207ENST00000533523 COL14A1Q05707 1796 aaKnown RBP23.16■■□□□ 1.3
CHMP4A-207ENST00000533523 DISP2A7MBM2 1401 aa23.16■■□□□ 1.3
CHMP4A-207ENST00000533523 TULP4Q9NRJ4 1543 aa23.15■■□□□ 1.3
CHMP4A-207ENST00000533523 EN1Q05925 392 aaPredicted RBP23.15■■□□□ 1.3
CHMP4A-207ENST00000533523 ITSN1Q15811 1721 aa23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms