RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 MTRQ99707 1265 aa8.64□□□□□ -1.03
CD44-236ENST00000533222 GJA5P36382 358 aa8.63□□□□□ -1.03
CD44-236ENST00000533222 GRIPAP1Q4V328 841 aa8.63□□□□□ -1.03
CD44-236ENST00000533222 BCL11AQ9H165 835 aa8.63□□□□□ -1.03
CD44-236ENST00000533222 C6orf229H3BNL8 230 aa8.62□□□□□ -1.03
CD44-236ENST00000533222 TUSC1Q2TAM9 212 aa8.62□□□□□ -1.03
CD44-236ENST00000533222 SCUBE3Q8IX30 993 aa8.62□□□□□ -1.03
CD44-236ENST00000533222 ZNF516Q92618 1163 aa8.62□□□□□ -1.03
CD44-236ENST00000533222 RFC5P40937 340 aa8.61□□□□□ -1.03
CD44-236ENST00000533222 TJAP1Q5JTD0 557 aa8.61□□□□□ -1.03
CD44-236ENST00000533222 ZBTB3Q9H5J0 574 aa8.61□□□□□ -1.03
CD44-236ENST00000533222 NUTM2BA6NNL0 878 aaPredicted RBP8.6□□□□□ -1.03
CD44-236ENST00000533222 NUTM2EB1AL46 878 aaPredicted RBP8.6□□□□□ -1.03
CD44-236ENST00000533222 CFAP99D6REC4 459 aa8.6□□□□□ -1.03
CD44-236ENST00000533222 MTMR2Q13614 643 aa8.6□□□□□ -1.03
CD44-236ENST00000533222 NUTM2DQ5VT03 806 aaPredicted RBP8.6□□□□□ -1.03
CD44-236ENST00000533222 NYAP1Q6ZVC0 841 aa8.6□□□□□ -1.03
CD44-236ENST00000533222 NUTM2AQ8IVF1 878 aaPredicted RBP8.6□□□□□ -1.03
CD44-236ENST00000533222 THAP11Q96EK4 314 aa8.6□□□□□ -1.03
CD44-236ENST00000533222 HCSTQ9UBK5 93 aa8.6□□□□□ -1.03
CD44-236ENST00000533222 NR1I2O75469 434 aa8.59□□□□□ -1.03
CD44-236ENST00000533222 PRPF38BQ5VTL8 546 aaKnown RBP8.59□□□□□ -1.03
CD44-236ENST00000533222 PPP2R2DQ66LE6 453 aa8.59□□□□□ -1.03
CD44-236ENST00000533222 BRICD5Q6PL45 260 aa8.59□□□□□ -1.03
CD44-236ENST00000533222 PRDM9Q9NQV7 894 aa8.58□□□□□ -1.04
CD44-236ENST00000533222 ZPR1O75312 459 aa8.57□□□□□ -1.04
CD44-236ENST00000533222 NKX2-3Q8TAU0 364 aa8.57□□□□□ -1.04
CD44-236ENST00000533222 Q3C1V9 767 aa8.56□□□□□ -1.04
CD44-236ENST00000533222 PRR7Q8TB68 274 aa8.56□□□□□ -1.04
CD44-236ENST00000533222 TSC1Q92574 1164 aa8.56□□□□□ -1.04
CD44-236ENST00000533222 IL21Q9HBE4 155 aa8.56□□□□□ -1.04
CD44-236ENST00000533222 AP1G2O75843 785 aa8.55□□□□□ -1.04
CD44-236ENST00000533222 FMNL1O95466 1100 aaPredicted RBP8.55□□□□□ -1.04
CD44-236ENST00000533222 RETREG3Q86VR2 466 aa8.55□□□□□ -1.04
CD44-236ENST00000533222 FAM160A2Q8N612 972 aaPredicted RBP8.55□□□□□ -1.04
CD44-236ENST00000533222 EIF5BO60841 1220 aaKnown RBP8.54□□□□□ -1.04
CD44-236ENST00000533222 SPSB2Q99619 263 aa8.54□□□□□ -1.04
CD44-236ENST00000533222 USB1Q9BQ65 265 aaKnown RBP8.54□□□□□ -1.04
CD44-236ENST00000533222 SNRKQ9NRH2 765 aa8.54□□□□□ -1.04
CD44-236ENST00000533222 PER1O15534 1290 aaPredicted RBP8.53□□□□□ -1.04
CD44-236ENST00000533222 ADH1BP00325 375 aa8.53□□□□□ -1.04
CD44-236ENST00000533222 CTDSPL2Q05D32 466 aa8.53□□□□□ -1.04
CD44-236ENST00000533222 SALL2Q9Y467 1007 aaPredicted RBP8.53□□□□□ -1.04
CD44-236ENST00000533222 USP17L8P0C7I0 530 aa8.52□□□□□ -1.05
CD44-236ENST00000533222 MCM6Q14566 821 aa8.52□□□□□ -1.05
CD44-236ENST00000533222 LRRN4Q8WUT4 740 aa8.52□□□□□ -1.05
CD44-236ENST00000533222 ARXQ96QS3 562 aa8.52□□□□□ -1.05
CD44-236ENST00000533222 HMX1Q9NP08 348 aaPredicted RBP8.52□□□□□ -1.05
CD44-236ENST00000533222 TIMELESSQ9UNS1 1208 aa8.52□□□□□ -1.05
CD44-236ENST00000533222 SPDYE5A6NIY4 337 aa8.51□□□□□ -1.05
CD44-236ENST00000533222 ITGBL1O95965 494 aaPredicted RBP8.51□□□□□ -1.05
CD44-236ENST00000533222 CENPBP07199 599 aaPredicted RBP8.51□□□□□ -1.05
CD44-236ENST00000533222 MSS51Q4VC12 460 aa8.5□□□□□ -1.05
CD44-236ENST00000533222 MTMR14Q8NCE2 650 aa8.5□□□□□ -1.05
CD44-236ENST00000533222 S1PR4O95977 384 aa8.49□□□□□ -1.05
CD44-236ENST00000533222 JUNDP17535 347 aa8.49□□□□□ -1.05
CD44-236ENST00000533222 TMEM259Q4ZIN3 620 aa8.49□□□□□ -1.05
CD44-236ENST00000533222 KCNC4Q03721 635 aa8.48□□□□□ -1.05
CD44-236ENST00000533222 HELBQ8NG08 1087 aaPredicted RBP8.48□□□□□ -1.05
CD44-236ENST00000533222 DXOO77932 396 aaKnown RBP8.47□□□□□ -1.05
CD44-236ENST00000533222 EPS8L1Q8TE68 723 aa8.47□□□□□ -1.05
CD44-236ENST00000533222 SLC6A16Q9GZN6 736 aa8.47□□□□□ -1.05
CD44-236ENST00000533222 PPEF1O14829 653 aaPredicted RBP8.46□□□□□ -1.06
CD44-236ENST00000533222 MMP16P51512 607 aa8.46□□□□□ -1.06
CD44-236ENST00000533222 BANK1Q8NDB2 785 aa8.46□□□□□ -1.06
CD44-236ENST00000533222 POM121Q96HA1 1249 aa8.46□□□□□ -1.06
CD44-236ENST00000533222 MAP10Q9P2G4 905 aa8.46□□□□□ -1.06
CD44-236ENST00000533222 DESI1Q6ICB0 168 aa8.45□□□□□ -1.06
CD44-236ENST00000533222 LYPD8Q6UX82 237 aa8.45□□□□□ -1.06
CD44-236ENST00000533222 C14orf37Q86TY3 774 aa8.45□□□□□ -1.06
CD44-236ENST00000533222 GJD4Q96KN9 370 aaPredicted RBP8.45□□□□□ -1.06
CD44-236ENST00000533222 TRIM34Q9BYJ4 488 aa8.45□□□□□ -1.06
CD44-236ENST00000533222 FLIIQ13045 1269 aa8.44□□□□□ -1.06
CD44-236ENST00000533222 CLUAP1Q96AJ1 413 aa8.44□□□□□ -1.06
CD44-236ENST00000533222 F12P00748 615 aaPredicted RBP8.43□□□□□ -1.06
CD44-236ENST00000533222 NR6A1Q15406 480 aa8.43□□□□□ -1.06
CD44-236ENST00000533222 PLSCR2Q9NRY7 297 aa8.43□□□□□ -1.06
CD44-236ENST00000533222 GPR37L1O60883 481 aa8.42□□□□□ -1.06
CD44-236ENST00000533222 PTPRNQ16849 979 aa8.42□□□□□ -1.06
CD44-236ENST00000533222 NUDT12Q9BQG2 462 aa8.42□□□□□ -1.06
CD44-236ENST00000533222 FCF1Q9Y324 198 aaKnown RBP8.42□□□□□ -1.06
CD44-236ENST00000533222 RNF223E7ERA6 249 aa8.41□□□□□ -1.06
CD44-236ENST00000533222 UBTFP17480 764 aaKnown RBP8.41□□□□□ -1.06
CD44-236ENST00000533222 PLA2G2CQ5R387 149 aa8.41□□□□□ -1.06
CD44-236ENST00000533222 CCDC24Q8N4L8 307 aa8.41□□□□□ -1.06
CD44-236ENST00000533222 TBC1D2BQ9UPU7 963 aa8.41□□□□□ -1.06
CD44-236ENST00000533222 CCNYL3P0C7X3 344 aa8.4□□□□□ -1.06
CD44-236ENST00000533222 PTCRAQ6ISU1 281 aaPredicted RBP8.4□□□□□ -1.06
CD44-236ENST00000533222 PPP1R18Q6NYC8 613 aa8.4□□□□□ -1.06
CD44-236ENST00000533222 GDPD2Q9HCC8 539 aa8.4□□□□□ -1.06
CD44-236ENST00000533222 PLA2G2EQ9NZK7 142 aa8.4□□□□□ -1.06
CD44-236ENST00000533222 COG6Q9Y2V7 657 aa8.4□□□□□ -1.06
CD44-236ENST00000533222 CTHP32929 405 aa8.39□□□□□ -1.07
CD44-236ENST00000533222 RANGAP1P46060 587 aaPredicted RBP8.39□□□□□ -1.07
CD44-236ENST00000533222 FAM9AQ8IZU1 332 aaPredicted RBP8.39□□□□□ -1.07
CD44-236ENST00000533222 KCNH2Q12809 1159 aa8.37□□□□□ -1.07
CD44-236ENST00000533222 EVA1BQ9NVM1 165 aa8.37□□□□□ -1.07
CD44-236ENST00000533222 ABL2P42684 1182 aa8.36□□□□□ -1.07
CD44-236ENST00000533222 EMID1Q96A84 441 aaPredicted RBP8.36□□□□□ -1.07
CD44-236ENST00000533222 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms