RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 ARHGEF28Q8N1W1 1705 aaKnown RBP21.66■■□□□ 1.06
CPSF1-208ENST00000532560 AHDC1Q5TGY3 1603 aaPredicted RBP21.66■■□□□ 1.06
CPSF1-208ENST00000532560 C1orf167Q5SNV9 1468 aa21.66■■□□□ 1.06
CPSF1-208ENST00000532560 ILDR2Q71H61 639 aa21.66■■□□□ 1.06
CPSF1-208ENST00000532560 BRINP3Q76B58 766 aa21.65■■□□□ 1.06
CPSF1-208ENST00000532560 PRAM1Q96QH2 718 aa21.65■■□□□ 1.06
CPSF1-208ENST00000532560 TRPM1Q7Z4N2 1603 aa21.65■■□□□ 1.06
CPSF1-208ENST00000532560 ADGRB2O60241 1585 aa21.65■■□□□ 1.06
CPSF1-208ENST00000532560 TONSLQ96HA7 1378 aa21.64■■□□□ 1.06
CPSF1-208ENST00000532560 PHLPP1O60346 1717 aa21.64■■□□□ 1.06
CPSF1-208ENST00000532560 TRAK1Q9UPV9 953 aa21.64■■□□□ 1.05
CPSF1-208ENST00000532560 FMN2Q9NZ56 1722 aa21.63■■□□□ 1.05
CPSF1-208ENST00000532560 CLSPNQ9HAW4 1339 aa21.62■■□□□ 1.05
CPSF1-208ENST00000532560 COL16A1Q07092 1604 aaPredicted RBP21.62■■□□□ 1.05
CPSF1-208ENST00000532560 NHSL1Q5SYE7 1610 aa21.62■■□□□ 1.05
CPSF1-208ENST00000532560 NBPF1Q3BBV0 1214 aa21.61■■□□□ 1.05
CPSF1-208ENST00000532560 POGKQ9P215 609 aa21.61■■□□□ 1.05
CPSF1-208ENST00000532560 SAFB2Q14151 953 aaKnown RBP eCLIP21.58■■□□□ 1.05
CPSF1-208ENST00000532560 SOCS7O14512 581 aa21.57■■□□□ 1.04
CPSF1-208ENST00000532560 NBPF8Q3BBV2 869 aa21.55■■□□□ 1.04
CPSF1-208ENST00000532560 ROCK2O75116 1388 aaKnown RBP21.55■■□□□ 1.04
CPSF1-208ENST00000532560 GPRASP1Q5JY77 1395 aa21.54■■□□□ 1.04
CPSF1-208ENST00000532560 MED1Q15648 1581 aaPredicted RBP21.53■■□□□ 1.04
CPSF1-208ENST00000532560 RALGAPBQ86X10 1494 aa21.53■■□□□ 1.04
CPSF1-208ENST00000532560 ORAI2Q96SN7 254 aa21.53■■□□□ 1.04
CPSF1-208ENST00000532560 ANKARQ7Z5J8 1434 aa21.53■■□□□ 1.04
CPSF1-208ENST00000532560 JCADQ9P266 1359 aa21.52■■□□□ 1.04
CPSF1-208ENST00000532560 KIF1AQ12756 1690 aa21.52■■□□□ 1.04
CPSF1-208ENST00000532560 MINK1Q8N4C8 1332 aaPredicted RBP21.52■■□□□ 1.03
CPSF1-208ENST00000532560 EIF3AQ14152 1382 aaKnown RBP21.51■■□□□ 1.03
CPSF1-208ENST00000532560 USP32Q8NFA0 1604 aa21.51■■□□□ 1.03
CPSF1-208ENST00000532560 TULP4Q9NRJ4 1543 aa21.5■■□□□ 1.03
CPSF1-208ENST00000532560 ESCO1Q5FWF5 840 aa21.5■■□□□ 1.03
CPSF1-208ENST00000532560 HIRIP3Q9BW71 556 aaPredicted RBP21.5■■□□□ 1.03
CPSF1-208ENST00000532560 SHPRHQ149N8 1683 aa21.5■■□□□ 1.03
CPSF1-208ENST00000532560 NUTM2FA1L443 756 aa21.49■■□□□ 1.03
CPSF1-208ENST00000532560 QRICH2Q9H0J4 1663 aa21.48■■□□□ 1.03
CPSF1-208ENST00000532560 CENPJQ9HC77 1338 aaPredicted RBP21.48■■□□□ 1.03
CPSF1-208ENST00000532560 RGPD8O14715 1765 aaPredicted RBP21.47■■□□□ 1.03
CPSF1-208ENST00000532560 WASLO00401 505 aaPredicted RBP21.47■■□□□ 1.03
CPSF1-208ENST00000532560 DDX17Q92841 729 aaKnown RBP21.47■■□□□ 1.03
CPSF1-208ENST00000532560 TIMELESSQ9UNS1 1208 aa21.47■■□□□ 1.03
CPSF1-208ENST00000532560 SOS2Q07890 1332 aaPredicted RBP21.47■■□□□ 1.03
CPSF1-208ENST00000532560 NPHP3Q7Z494 1330 aa21.47■■□□□ 1.03
CPSF1-208ENST00000532560 CCER1Q8TC90 406 aaPredicted RBP21.46■■□□□ 1.03
CPSF1-208ENST00000532560 PXDNQ92626 1479 aa21.45■■□□□ 1.03
CPSF1-208ENST00000532560 ATP7BP35670 1465 aa21.44■■□□□ 1.02
CPSF1-208ENST00000532560 LRRC59Q96AG4 307 aaKnown RBP21.43■■□□□ 1.02
CPSF1-208ENST00000532560 PRR36Q9H6K5 1346 aa21.43■■□□□ 1.02
CPSF1-208ENST00000532560 ITSN1Q15811 1721 aa21.43■■□□□ 1.02
CPSF1-208ENST00000532560 SPATA31A6Q5VVP1 1343 aa21.42■■□□□ 1.02
CPSF1-208ENST00000532560 PHF8Q9UPP1 1060 aa21.42■■□□□ 1.02
CPSF1-208ENST00000532560 PNPLA6Q8IY17 1366 aa21.41■■□□□ 1.02
CPSF1-208ENST00000532560 CARD11Q9BXL7 1154 aa21.41■■□□□ 1.02
CPSF1-208ENST00000532560 FOXO3O43524 673 aa21.4■■□□□ 1.02
CPSF1-208ENST00000532560 TOPAZ1Q8N9V7 1692 aa21.4■■□□□ 1.02
CPSF1-208ENST00000532560 CDK19Q9BWU1 502 aa21.39■■□□□ 1.01
CPSF1-208ENST00000532560 SBNO2Q9Y2G9 1366 aa21.38■■□□□ 1.01
CPSF1-208ENST00000532560 LRP6O75581 1613 aa21.37■■□□□ 1.01
CPSF1-208ENST00000532560 COL22A1Q8NFW1 1626 aaPredicted RBP21.37■■□□□ 1.01
CPSF1-208ENST00000532560 NUDT16Q96DE0 195 aaKnown RBP21.36■■□□□ 1.01
CPSF1-208ENST00000532560 XPCQ01831 940 aaPredicted RBP21.35■■□□□ 1.01
CPSF1-208ENST00000532560 TNS3Q68CZ2 1445 aa21.33■■□□□ 1.01
CPSF1-208ENST00000532560 KRT28Q7Z3Y7 464 aa21.33■■□□□ 1.01
CPSF1-208ENST00000532560 PMFBP1Q8TBY8 1022 aa21.33■■□□□ 1.01
CPSF1-208ENST00000532560 SBNO1A3KN83 1393 aa21.33■■□□□ 1
CPSF1-208ENST00000532560 EVC2Q86UK5 1308 aa21.32■■□□□ 1
CPSF1-208ENST00000532560 SRPK2P78362 688 aaKnown RBP21.32■■□□□ 1
CPSF1-208ENST00000532560 TRPM3Q9HCF6 1732 aaPredicted RBP21.32■■□□□ 1
CPSF1-208ENST00000532560 SPATA31A3Q5VYP0 1347 aa21.31■■□□□ 1
CPSF1-208ENST00000532560 PSME1Q06323 249 aa21.31■■□□□ 1
CPSF1-208ENST00000532560 PHF23Q9BUL5 403 aaPredicted RBP21.31■■□□□ 1
CPSF1-208ENST00000532560 CCDC61Q9Y6R9 512 aa21.31■■□□□ 1
CPSF1-208ENST00000532560 POLR3AO14802 1390 aaPredicted RBP21.3■■□□□ 1
CPSF1-208ENST00000532560 CABP2Q9NPB3 220 aa21.29■■□□□ 1
CPSF1-208ENST00000532560 PLEKHG3A1L390 1219 aa21.28■■□□□ 1
CPSF1-208ENST00000532560 NGDNQ8NEJ9 315 aaKnown RBP21.28■■□□□ 1
CPSF1-208ENST00000532560 PPIP5K1Q6PFW1 1433 aa21.28■■□□□ 1
CPSF1-208ENST00000532560 ARHGEF10O15013 1369 aa21.26■□□□□ 0.99
CPSF1-208ENST00000532560 USP47Q96K76 1375 aa21.26■□□□□ 0.99
CPSF1-208ENST00000532560 ALS2Q96Q42 1657 aa21.26■□□□□ 0.99
CPSF1-208ENST00000532560 NUTM2BA6NNL0 878 aaPredicted RBP21.26■□□□□ 0.99
CPSF1-208ENST00000532560 NUTM2EB1AL46 878 aaPredicted RBP21.26■□□□□ 0.99
CPSF1-208ENST00000532560 NUTM2AQ8IVF1 878 aaPredicted RBP21.26■□□□□ 0.99
CPSF1-208ENST00000532560 ATAD2Q6PL18 1390 aa21.25■□□□□ 0.99
CPSF1-208ENST00000532560 MEX3CQ5U5Q3 659 aaKnown RBP21.25■□□□□ 0.99
CPSF1-208ENST00000532560 RGS17Q9UGC6 210 aaPredicted RBP21.24■□□□□ 0.99
CPSF1-208ENST00000532560 ACEP12821 1306 aa21.24■□□□□ 0.99
CPSF1-208ENST00000532560 ST20-MTHFSA0A0A6YYL1 179 aa21.23■□□□□ 0.99
CPSF1-208ENST00000532560 ABCA3Q99758 1704 aa21.22■□□□□ 0.99
CPSF1-208ENST00000532560 TESK2Q96S53 571 aa21.22■□□□□ 0.99
CPSF1-208ENST00000532560 SLC24A1O60721 1099 aa21.2■□□□□ 0.98
CPSF1-208ENST00000532560 MARF1Q9Y4F3 1742 aaKnown RBP21.2■□□□□ 0.98
CPSF1-208ENST00000532560 BRD4O60885 1362 aaPredicted RBP21.2■□□□□ 0.98
CPSF1-208ENST00000532560 CABP1Q9NZU7 370 aa21.19■□□□□ 0.98
CPSF1-208ENST00000532560 PUS7Q96PZ0 661 aaKnown RBP21.18■□□□□ 0.98
CPSF1-208ENST00000532560 ADAMTS2O95450 1211 aa21.17■□□□□ 0.98
CPSF1-208ENST00000532560 LMOD2Q6P5Q4 547 aa21.17■□□□□ 0.98
CPSF1-208ENST00000532560 USP6P35125 1406 aa21.17■□□□□ 0.98
CPSF1-208ENST00000532560 CRYBG1Q9Y4K1 1723 aa21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms