RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 GPRASP1Q5JY77 1395 aa19.95■□□□□ 0.79
USF1-209ENST00000529476 WAPLQ7Z5K2 1190 aa19.95■□□□□ 0.78
USF1-209ENST00000529476 PLEKHH1Q9ULM0 1364 aa19.95■□□□□ 0.78
USF1-209ENST00000529476 ROBO1Q9Y6N7 1651 aa19.94■□□□□ 0.78
USF1-209ENST00000529476 SIRT1Q96EB6 747 aa19.93■□□□□ 0.78
USF1-209ENST00000529476 PRAM1Q96QH2 718 aa19.93■□□□□ 0.78
USF1-209ENST00000529476 NALCNQ8IZF0 1738 aa19.93■□□□□ 0.78
USF1-209ENST00000529476 C14orf37Q86TY3 774 aa19.92■□□□□ 0.78
USF1-209ENST00000529476 UPF1Q92900 1129 aaKnown RBP eCLIP19.92■□□□□ 0.78
USF1-209ENST00000529476 CARD11Q9BXL7 1154 aa19.92■□□□□ 0.78
USF1-209ENST00000529476 NCOA3Q9Y6Q9 1424 aa19.92■□□□□ 0.78
USF1-209ENST00000529476 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.91■□□□□ 0.78
USF1-209ENST00000529476 SAFB2Q14151 953 aaKnown RBP eCLIP19.9■□□□□ 0.78
USF1-209ENST00000529476 POGKQ9P215 609 aa19.9■□□□□ 0.78
USF1-209ENST00000529476 ADGRL3Q9HAR2 1447 aa19.89■□□□□ 0.77
USF1-209ENST00000529476 MSH6P52701 1360 aa19.88■□□□□ 0.77
USF1-209ENST00000529476 C19orf44Q9H6X5 657 aa19.86■□□□□ 0.77
USF1-209ENST00000529476 QRICH2Q9H0J4 1663 aa19.85■□□□□ 0.77
USF1-209ENST00000529476 JCADQ9P266 1359 aa19.84■□□□□ 0.77
USF1-209ENST00000529476 EIF3AQ14152 1382 aaKnown RBP19.83■□□□□ 0.77
USF1-209ENST00000529476 MINK1Q8N4C8 1332 aaPredicted RBP19.83■□□□□ 0.77
USF1-209ENST00000529476 CENPJQ9HC77 1338 aaPredicted RBP19.83■□□□□ 0.77
USF1-209ENST00000529476 PHLPP1O60346 1717 aa19.82■□□□□ 0.76
USF1-209ENST00000529476 HIRIP3Q9BW71 556 aaPredicted RBP19.82■□□□□ 0.76
USF1-209ENST00000529476 DCCP43146 1447 aa19.82■□□□□ 0.76
USF1-209ENST00000529476 ADGRB2O60241 1585 aa19.82■□□□□ 0.76
USF1-209ENST00000529476 CDC42BPGQ6DT37 1551 aa19.82■□□□□ 0.76
USF1-209ENST00000529476 ATF3P18847 181 aa19.81■□□□□ 0.76
USF1-209ENST00000529476 USP47Q96K76 1375 aa19.81■□□□□ 0.76
USF1-209ENST00000529476 LRP6O75581 1613 aa19.8■□□□□ 0.76
USF1-209ENST00000529476 SLAIN2Q9P270 581 aa19.8■□□□□ 0.76
USF1-209ENST00000529476 CADPS2Q86UW7 1296 aa19.79■□□□□ 0.76
USF1-209ENST00000529476 FMN2Q9NZ56 1722 aa19.79■□□□□ 0.76
USF1-209ENST00000529476 MST1RQ04912 1400 aa19.76■□□□□ 0.75
USF1-209ENST00000529476 ST20-MTHFSA0A0A6YYL1 179 aa19.76■□□□□ 0.75
USF1-209ENST00000529476 ZNF772Q68DY9 489 aaPredicted RBP19.76■□□□□ 0.75
USF1-209ENST00000529476 COL16A1Q07092 1604 aaPredicted RBP19.76■□□□□ 0.75
USF1-209ENST00000529476 NUTM2FA1L443 756 aa19.74■□□□□ 0.75
USF1-209ENST00000529476 WASLO00401 505 aaPredicted RBP19.74■□□□□ 0.75
USF1-209ENST00000529476 TULP4Q9NRJ4 1543 aa19.74■□□□□ 0.75
USF1-209ENST00000529476 RGPD8O14715 1765 aaPredicted RBP19.74■□□□□ 0.75
USF1-209ENST00000529476 ZEB1P37275 1124 aaPredicted RBP19.73■□□□□ 0.75
USF1-209ENST00000529476 MEX3CQ5U5Q3 659 aaKnown RBP19.73■□□□□ 0.75
USF1-209ENST00000529476 SPATA31A6Q5VVP1 1343 aa19.73■□□□□ 0.75
USF1-209ENST00000529476 C1orf167Q5SNV9 1468 aa19.73■□□□□ 0.75
USF1-209ENST00000529476 USP32Q8NFA0 1604 aa19.73■□□□□ 0.75
USF1-209ENST00000529476 SBNO2Q9Y2G9 1366 aa19.72■□□□□ 0.75
USF1-209ENST00000529476 CDK19Q9BWU1 502 aa19.72■□□□□ 0.75
USF1-209ENST00000529476 HSPA5P11021 654 aaKnown RBP19.71■□□□□ 0.75
USF1-209ENST00000529476 EIF4G2P78344 907 aaKnown RBP eCLIP19.71■□□□□ 0.75
USF1-209ENST00000529476 TESK2Q96S53 571 aa19.71■□□□□ 0.75
USF1-209ENST00000529476 RXRBP28702 533 aa19.7■□□□□ 0.74
USF1-209ENST00000529476 EVC2Q86UK5 1308 aa19.69■□□□□ 0.74
USF1-209ENST00000529476 CABP2Q9NPB3 220 aa19.68■□□□□ 0.74
USF1-209ENST00000529476 PRR36Q9H6K5 1346 aa19.68■□□□□ 0.74
USF1-209ENST00000529476 ANKARQ7Z5J8 1434 aa19.68■□□□□ 0.74
USF1-209ENST00000529476 SRPK2P78362 688 aaKnown RBP19.67■□□□□ 0.74
USF1-209ENST00000529476 ORAI2Q96SN7 254 aa19.67■□□□□ 0.74
USF1-209ENST00000529476 ATP7BP35670 1465 aa19.67■□□□□ 0.74
USF1-209ENST00000529476 ESCO1Q5FWF5 840 aa19.66■□□□□ 0.74
USF1-209ENST00000529476 BRINP3Q76B58 766 aa19.66■□□□□ 0.74
USF1-209ENST00000529476 NUDT16Q96DE0 195 aaKnown RBP19.65■□□□□ 0.74
USF1-209ENST00000529476 TOPAZ1Q8N9V7 1692 aa19.65■□□□□ 0.74
USF1-209ENST00000529476 ITSN1Q15811 1721 aa19.65■□□□□ 0.74
USF1-209ENST00000529476 CDK12Q9NYV4 1490 aaPredicted RBP19.64■□□□□ 0.73
USF1-209ENST00000529476 KIF1AQ12756 1690 aa19.62■□□□□ 0.73
USF1-209ENST00000529476 SHPRHQ149N8 1683 aa19.62■□□□□ 0.73
USF1-209ENST00000529476 NUTM2BA6NNL0 878 aaPredicted RBP19.62■□□□□ 0.73
USF1-209ENST00000529476 NUTM2EB1AL46 878 aaPredicted RBP19.62■□□□□ 0.73
USF1-209ENST00000529476 TMF1P82094 1093 aa19.62■□□□□ 0.73
USF1-209ENST00000529476 NUTM2AQ8IVF1 878 aaPredicted RBP19.62■□□□□ 0.73
USF1-209ENST00000529476 AHDC1Q5TGY3 1603 aaPredicted RBP19.62■□□□□ 0.73
USF1-209ENST00000529476 SLC24A1O60721 1099 aa19.61■□□□□ 0.73
USF1-209ENST00000529476 PHF8Q9UPP1 1060 aa19.61■□□□□ 0.73
USF1-209ENST00000529476 SRCAPQ6ZRS2 3230 aa19.61■□□□□ 0.73
USF1-209ENST00000529476 NHSL1Q5SYE7 1610 aa19.61■□□□□ 0.73
USF1-209ENST00000529476 DDX17Q92841 729 aaKnown RBP19.6■□□□□ 0.73
USF1-209ENST00000529476 AFF2P51816 1311 aa19.59■□□□□ 0.73
USF1-209ENST00000529476 PMFBP1Q8TBY8 1022 aa19.59■□□□□ 0.73
USF1-209ENST00000529476 CCDC61Q9Y6R9 512 aa19.59■□□□□ 0.73
USF1-209ENST00000529476 PPIP5K1Q6PFW1 1433 aa19.59■□□□□ 0.73
USF1-209ENST00000529476 ATAD2Q6PL18 1390 aa19.57■□□□□ 0.72
USF1-209ENST00000529476 FOXO3O43524 673 aa19.57■□□□□ 0.72
USF1-209ENST00000529476 RGS12O14924 1447 aa19.57■□□□□ 0.72
USF1-209ENST00000529476 PUS7Q96PZ0 661 aaKnown RBP19.56■□□□□ 0.72
USF1-209ENST00000529476 CABP1Q9NZU7 370 aa19.56■□□□□ 0.72
USF1-209ENST00000529476 PLEKHG3A1L390 1219 aa19.55■□□□□ 0.72
USF1-209ENST00000529476 C11orf95C9JLR9 678 aaPredicted RBP19.54■□□□□ 0.72
USF1-209ENST00000529476 XPCQ01831 940 aaPredicted RBP19.54■□□□□ 0.72
USF1-209ENST00000529476 CDCA8Q53HL2 280 aa19.54■□□□□ 0.72
USF1-209ENST00000529476 NPHP3Q7Z494 1330 aa19.53■□□□□ 0.72
USF1-209ENST00000529476 NGDNQ8NEJ9 315 aaKnown RBP19.53■□□□□ 0.72
USF1-209ENST00000529476 PXDNQ92626 1479 aa19.53■□□□□ 0.72
USF1-209ENST00000529476 ACEP12821 1306 aa19.52■□□□□ 0.72
USF1-209ENST00000529476 TMC1Q8TDI8 760 aa19.52■□□□□ 0.72
USF1-209ENST00000529476 POLR3AO14802 1390 aaPredicted RBP19.52■□□□□ 0.72
USF1-209ENST00000529476 POLR3GLQ9BT43 218 aa19.51■□□□□ 0.71
USF1-209ENST00000529476 SLC12A5Q9H2X9 1139 aa19.51■□□□□ 0.71
USF1-209ENST00000529476 QTRT2Q9H974 415 aaKnown RBP19.51■□□□□ 0.71
USF1-209ENST00000529476 MYOM1P52179 1685 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms