RNA–Protein interactions for RNA: ENST00000527887.1

CAPN1-212, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 348 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-212ENST00000527887 MYOM2P54296 1465 aa20.86■□□□□ 0.93
CAPN1-212ENST00000527887 IFT172Q9UG01 1749 aa20.85■□□□□ 0.93
CAPN1-212ENST00000527887 WAPLQ7Z5K2 1190 aa20.85■□□□□ 0.93
CAPN1-212ENST00000527887 DDX17Q92841 729 aaKnown RBP20.85■□□□□ 0.93
CAPN1-212ENST00000527887 NRXN1Q9ULB1 1477 aa20.85■□□□□ 0.93
CAPN1-212ENST00000527887 YTHDC2Q9H6S0 1430 aaKnown RBP20.85■□□□□ 0.93
CAPN1-212ENST00000527887 DHX57Q6P158 1386 aaKnown RBP20.85■□□□□ 0.93
CAPN1-212ENST00000527887 NUTM2BA6NNL0 878 aaPredicted RBP20.84■□□□□ 0.93
CAPN1-212ENST00000527887 NUTM2EB1AL46 878 aaPredicted RBP20.84■□□□□ 0.93
CAPN1-212ENST00000527887 NUTM2AQ8IVF1 878 aaPredicted RBP20.84■□□□□ 0.93
CAPN1-212ENST00000527887 PNPLA6Q8IY17 1366 aa20.84■□□□□ 0.93
CAPN1-212ENST00000527887 NPHP3Q7Z494 1330 aa20.83■□□□□ 0.93
CAPN1-212ENST00000527887 ESCO1Q5FWF5 840 aa20.83■□□□□ 0.93
CAPN1-212ENST00000527887 CDC42BPGQ6DT37 1551 aa20.83■□□□□ 0.92
CAPN1-212ENST00000527887 LAMC1P11047 1609 aa20.82■□□□□ 0.92
CAPN1-212ENST00000527887 CFAP70Q5T0N1 1121 aa20.82■□□□□ 0.92
CAPN1-212ENST00000527887 KNDC1Q76NI1 1749 aa20.78■□□□□ 0.92
CAPN1-212ENST00000527887 PLEKHH1Q9ULM0 1364 aa20.77■□□□□ 0.92
CAPN1-212ENST00000527887 RXRBP28702 533 aa20.77■□□□□ 0.92
CAPN1-212ENST00000527887 AFF2P51816 1311 aa20.77■□□□□ 0.91
CAPN1-212ENST00000527887 FOXO3O43524 673 aa20.75■□□□□ 0.91
CAPN1-212ENST00000527887 DCAF11Q8TEB1 546 aa20.75■□□□□ 0.91
CAPN1-212ENST00000527887 C8orf37Q96NL8 207 aa20.75■□□□□ 0.91
CAPN1-212ENST00000527887 PRAM1Q96QH2 718 aa20.73■□□□□ 0.91
CAPN1-212ENST00000527887 POGKQ9P215 609 aa20.73■□□□□ 0.91
CAPN1-212ENST00000527887 NUTM2FA1L443 756 aa20.72■□□□□ 0.91
CAPN1-212ENST00000527887 NGLY1Q96IV0 654 aa20.72■□□□□ 0.91
CAPN1-212ENST00000527887 KDM2AQ9Y2K7 1162 aa20.71■□□□□ 0.91
CAPN1-212ENST00000527887 DLC1Q96QB1 1528 aa20.71■□□□□ 0.91
CAPN1-212ENST00000527887 CDK12Q9NYV4 1490 aaPredicted RBP20.7■□□□□ 0.9
CAPN1-212ENST00000527887 ADAMTS2O95450 1211 aa20.7■□□□□ 0.9
CAPN1-212ENST00000527887 QTRT2Q9H974 415 aaKnown RBP20.7■□□□□ 0.9
CAPN1-212ENST00000527887 PXDNQ92626 1479 aa20.69■□□□□ 0.9
CAPN1-212ENST00000527887 RBM6P78332 1123 aaKnown RBP20.69■□□□□ 0.9
CAPN1-212ENST00000527887 FNBP4Q8N3X1 1017 aaPredicted RBP20.68■□□□□ 0.9
CAPN1-212ENST00000527887 PHF8Q9UPP1 1060 aa20.68■□□□□ 0.9
CAPN1-212ENST00000527887 PSME1Q06323 249 aa20.67■□□□□ 0.9
CAPN1-212ENST00000527887 TRAK1Q9UPV9 953 aa20.67■□□□□ 0.9
CAPN1-212ENST00000527887 ADGRB1O14514 1584 aa20.67■□□□□ 0.9
CAPN1-212ENST00000527887 KRT28Q7Z3Y7 464 aa20.66■□□□□ 0.9
CAPN1-212ENST00000527887 FMN2Q9NZ56 1722 aa20.65■□□□□ 0.9
CAPN1-212ENST00000527887 COL22A1Q8NFW1 1626 aaPredicted RBP20.65■□□□□ 0.9
CAPN1-212ENST00000527887 SPATA31A3Q5VYP0 1347 aa20.65■□□□□ 0.9
CAPN1-212ENST00000527887 XPCQ01831 940 aaPredicted RBP20.65■□□□□ 0.9
CAPN1-212ENST00000527887 SAFB2Q14151 953 aaKnown RBP eCLIP20.65■□□□□ 0.9
CAPN1-212ENST00000527887 USP21Q9UK80 565 aa20.65■□□□□ 0.9
CAPN1-212ENST00000527887 ANKARQ7Z5J8 1434 aa20.64■□□□□ 0.89
CAPN1-212ENST00000527887 EIF3AQ14152 1382 aaKnown RBP20.64■□□□□ 0.89
CAPN1-212ENST00000527887 TRPC5Q9UL62 973 aaPredicted RBP20.64■□□□□ 0.89
CAPN1-212ENST00000527887 KIF1AQ12756 1690 aa20.63■□□□□ 0.89
CAPN1-212ENST00000527887 SBNO1A3KN83 1393 aa20.6■□□□□ 0.89
CAPN1-212ENST00000527887 UPF1Q92900 1129 aaKnown RBP eCLIP20.6■□□□□ 0.89
CAPN1-212ENST00000527887 WASLO00401 505 aaPredicted RBP20.59■□□□□ 0.89
CAPN1-212ENST00000527887 ADGRB2O60241 1585 aa20.59■□□□□ 0.89
CAPN1-212ENST00000527887 MINK1Q8N4C8 1332 aaPredicted RBP20.57■□□□□ 0.88
CAPN1-212ENST00000527887 TNS3Q68CZ2 1445 aa20.57■□□□□ 0.88
CAPN1-212ENST00000527887 ARHGEF10O15013 1369 aa20.57■□□□□ 0.88
CAPN1-212ENST00000527887 HIRIP3Q9BW71 556 aaPredicted RBP20.56■□□□□ 0.88
CAPN1-212ENST00000527887 ATRNO75882 1429 aa20.55■□□□□ 0.88
CAPN1-212ENST00000527887 PMFBP1Q8TBY8 1022 aa20.54■□□□□ 0.88
CAPN1-212ENST00000527887 GPRASP1Q5JY77 1395 aa20.54■□□□□ 0.88
CAPN1-212ENST00000527887 RGS12O14924 1447 aa20.53■□□□□ 0.88
CAPN1-212ENST00000527887 HAP1P54257 671 aaPredicted RBP20.53■□□□□ 0.88
CAPN1-212ENST00000527887 BCL9LQ86UU0 1499 aa20.53■□□□□ 0.88
CAPN1-212ENST00000527887 UNC5CLQ8IV45 518 aa20.52■□□□□ 0.88
CAPN1-212ENST00000527887 TULP4Q9NRJ4 1543 aa20.52■□□□□ 0.87
CAPN1-212ENST00000527887 GJD4Q96KN9 370 aaPredicted RBP20.51■□□□□ 0.87
CAPN1-212ENST00000527887 PRR36Q9H6K5 1346 aa20.51■□□□□ 0.87
CAPN1-212ENST00000527887 LMOD2Q6P5Q4 547 aa20.5■□□□□ 0.87
CAPN1-212ENST00000527887 NGDNQ8NEJ9 315 aaKnown RBP20.49■□□□□ 0.87
CAPN1-212ENST00000527887 SLIT2O94813 1529 aa20.48■□□□□ 0.87
CAPN1-212ENST00000527887 USP32Q8NFA0 1604 aa20.48■□□□□ 0.87
CAPN1-212ENST00000527887 ATAD2Q6PL18 1390 aa20.47■□□□□ 0.87
CAPN1-212ENST00000527887 KIAA1210Q9ULL0 1709 aa20.47■□□□□ 0.87
CAPN1-212ENST00000527887 NUDT16Q96DE0 195 aaKnown RBP20.47■□□□□ 0.87
CAPN1-212ENST00000527887 NBPF1Q3BBV0 1214 aa20.46■□□□□ 0.87
CAPN1-212ENST00000527887 CABLES1Q8TDN4 633 aa20.46■□□□□ 0.87
CAPN1-212ENST00000527887 CDK19Q9BWU1 502 aa20.46■□□□□ 0.87
CAPN1-212ENST00000527887 RGPD8O14715 1765 aaPredicted RBP20.46■□□□□ 0.87
CAPN1-212ENST00000527887 CCDC61Q9Y6R9 512 aa20.45■□□□□ 0.86
CAPN1-212ENST00000527887 MARF1Q9Y4F3 1742 aaKnown RBP20.44■□□□□ 0.86
CAPN1-212ENST00000527887 L3MBTL2Q969R5 705 aa20.44■□□□□ 0.86
CAPN1-212ENST00000527887 VPS72Q15906 364 aa20.43■□□□□ 0.86
CAPN1-212ENST00000527887 ARHGEF28Q8N1W1 1705 aaKnown RBP20.42■□□□□ 0.86
CAPN1-212ENST00000527887 PLEKHG3A1L390 1219 aa20.42■□□□□ 0.86
CAPN1-212ENST00000527887 ATP7BP35670 1465 aa20.42■□□□□ 0.86
CAPN1-212ENST00000527887 FAM83GA6ND36 823 aa20.41■□□□□ 0.86
CAPN1-212ENST00000527887 CCDC125Q86Z20 511 aa20.41■□□□□ 0.86
CAPN1-212ENST00000527887 CENPJQ9HC77 1338 aaPredicted RBP20.41■□□□□ 0.86
CAPN1-212ENST00000527887 PAK3O75914 559 aaPredicted RBP20.4■□□□□ 0.86
CAPN1-212ENST00000527887 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.4■□□□□ 0.86
CAPN1-212ENST00000527887 RALGAPBQ86X10 1494 aa20.39■□□□□ 0.85
CAPN1-212ENST00000527887 POLR3AO14802 1390 aaPredicted RBP20.39■□□□□ 0.85
CAPN1-212ENST00000527887 ONECUT3O60422 494 aaPredicted RBP20.39■□□□□ 0.85
CAPN1-212ENST00000527887 PLEKHG5O94827 1062 aa20.38■□□□□ 0.85
CAPN1-212ENST00000527887 NBPF8Q3BBV2 869 aa20.38■□□□□ 0.85
CAPN1-212ENST00000527887 SIN3AQ96ST3 1273 aa20.38■□□□□ 0.85
CAPN1-212ENST00000527887 TRPM3Q9HCF6 1732 aaPredicted RBP20.37■□□□□ 0.85
CAPN1-212ENST00000527887 ACEP12821 1306 aa20.36■□□□□ 0.85
CAPN1-212ENST00000527887 NEUROD1Q13562 356 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms