RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 COL22A1Q8NFW1 1626 aaPredicted RBP35.36■■■■□ 3.25
CPSF1-202ENST00000527827 CCDC144AA2RUR9 1427 aa35.36■■■■□ 3.25
CPSF1-202ENST00000527827 SPATA31E1Q6ZUB1 1445 aa35.36■■■■□ 3.25
CPSF1-202ENST00000527827 IFT172Q9UG01 1749 aa35.36■■■■□ 3.25
CPSF1-202ENST00000527827 RGL3Q3MIN7 710 aa35.32■■■■□ 3.24
CPSF1-202ENST00000527827 TECPR2O15040 1411 aa35.32■■■■□ 3.24
CPSF1-202ENST00000527827 ESCO1Q5FWF5 840 aa35.31■■■■□ 3.24
CPSF1-202ENST00000527827 PXDNQ92626 1479 aa35.29■■■■□ 3.24
CPSF1-202ENST00000527827 MPHOSPH9Q99550 1183 aa35.29■■■■□ 3.24
CPSF1-202ENST00000527827 NPHP3Q7Z494 1330 aa35.29■■■■□ 3.24
CPSF1-202ENST00000527827 LRPPRCP42704 1394 aaKnown RBP35.28■■■■□ 3.24
CPSF1-202ENST00000527827 ANKRD30BQ9BXX2 1392 aa35.28■■■■□ 3.24
CPSF1-202ENST00000527827 STK26Q9P289 416 aa35.28■■■■□ 3.24
CPSF1-202ENST00000527827 USP21Q9UK80 565 aa35.28■■■■□ 3.24
CPSF1-202ENST00000527827 KNDC1Q76NI1 1749 aa35.27■■■■□ 3.24
CPSF1-202ENST00000527827 WAPLQ7Z5K2 1190 aa35.27■■■■□ 3.24
CPSF1-202ENST00000527827 FNBP4Q8N3X1 1017 aaPredicted RBP35.27■■■■□ 3.24
CPSF1-202ENST00000527827 MYOM2P54296 1465 aa35.27■■■■□ 3.24
CPSF1-202ENST00000527827 ABCC11Q96J66 1382 aa35.24■■■■□ 3.23
CPSF1-202ENST00000527827 FOXO3O43524 673 aa35.23■■■■□ 3.23
CPSF1-202ENST00000527827 TMEM132EQ6IEE7 984 aa35.23■■■■□ 3.23
CPSF1-202ENST00000527827 TRPC5Q9UL62 973 aaPredicted RBP35.23■■■■□ 3.23
CPSF1-202ENST00000527827 PLEKHH1Q9ULM0 1364 aa35.23■■■■□ 3.23
CPSF1-202ENST00000527827 PIK3C2GO75747 1445 aa35.23■■■■□ 3.23
CPSF1-202ENST00000527827 MARF1Q9Y4F3 1742 aaKnown RBP35.21■■■■□ 3.23
CPSF1-202ENST00000527827 XPCQ01831 940 aaPredicted RBP35.21■■■■□ 3.23
CPSF1-202ENST00000527827 ATRNO75882 1429 aa35.21■■■■□ 3.23
CPSF1-202ENST00000527827 NUTM2FA1L443 756 aa35.2■■■■□ 3.23
CPSF1-202ENST00000527827 FMN2Q9NZ56 1722 aa35.18■■■■□ 3.22
CPSF1-202ENST00000527827 YTHDC2Q9H6S0 1430 aaKnown RBP35.16■■■■□ 3.22
CPSF1-202ENST00000527827 BCL9LQ86UU0 1499 aa35.14■■■■□ 3.22
CPSF1-202ENST00000527827 ATAD2Q6PL18 1390 aa35.13■■■■□ 3.21
CPSF1-202ENST00000527827 KIF1AQ12756 1690 aa35.1■■■■□ 3.21
CPSF1-202ENST00000527827 SIRT1Q96EB6 747 aa35.08■■■■□ 3.21
CPSF1-202ENST00000527827 NRXN1Q9ULB1 1477 aa35.08■■■■□ 3.21
CPSF1-202ENST00000527827 C14orf93Q9H972 538 aaKnown RBP35.07■■■■□ 3.2
CPSF1-202ENST00000527827 RGPD8O14715 1765 aaPredicted RBP35.06■■■■□ 3.2
CPSF1-202ENST00000527827 SPATA31A3Q5VYP0 1347 aa35.06■■■■□ 3.2
CPSF1-202ENST00000527827 TNKS1BP1Q9C0C2 1729 aaKnown RBP35.03■■■■□ 3.2
CPSF1-202ENST00000527827 CFAP70Q5T0N1 1121 aa35.02■■■■□ 3.2
CPSF1-202ENST00000527827 KRT28Q7Z3Y7 464 aa35.01■■■■□ 3.2
CPSF1-202ENST00000527827 GJD4Q96KN9 370 aaPredicted RBP35.01■■■■□ 3.2
CPSF1-202ENST00000527827 ACIN1Q9UKV3 1341 aaKnown RBP35■■■■□ 3.19
CPSF1-202ENST00000527827 DHX57Q6P158 1386 aaKnown RBP34.99■■■■□ 3.19
CPSF1-202ENST00000527827 SLIT2O94813 1529 aa34.98■■■■□ 3.19
CPSF1-202ENST00000527827 USP32Q8NFA0 1604 aa34.97■■■■□ 3.19
CPSF1-202ENST00000527827 EP400Q96L91 3159 aa34.97■■■■□ 3.19
CPSF1-202ENST00000527827 PHF8Q9UPP1 1060 aa34.96■■■■□ 3.19
CPSF1-202ENST00000527827 UNC5CLQ8IV45 518 aa34.95■■■■□ 3.19
CPSF1-202ENST00000527827 GLI3P10071 1580 aa34.94■■■■□ 3.18
CPSF1-202ENST00000527827 TNS3Q68CZ2 1445 aa34.93■■■■□ 3.18
CPSF1-202ENST00000527827 PRAM1Q96QH2 718 aa34.93■■■■□ 3.18
CPSF1-202ENST00000527827 RALGAPBQ86X10 1494 aa34.92■■■■□ 3.18
CPSF1-202ENST00000527827 SAFB2Q14151 953 aaKnown RBP eCLIP34.91■■■■□ 3.18
CPSF1-202ENST00000527827 DLC1Q96QB1 1528 aa34.9■■■■□ 3.18
CPSF1-202ENST00000527827 PSME1Q06323 249 aa34.89■■■■□ 3.18
CPSF1-202ENST00000527827 CABLES1Q8TDN4 633 aa34.87■■■■□ 3.17
CPSF1-202ENST00000527827 SBNO1A3KN83 1393 aa34.87■■■■□ 3.17
CPSF1-202ENST00000527827 RAB3GAP2Q9H2M9 1393 aa34.87■■■■□ 3.17
CPSF1-202ENST00000527827 ABCA3Q99758 1704 aa34.86■■■■□ 3.17
CPSF1-202ENST00000527827 CCDC125Q86Z20 511 aa34.86■■■■□ 3.17
CPSF1-202ENST00000527827 ADGRB1O14514 1584 aa34.85■■■■□ 3.17
CPSF1-202ENST00000527827 ADGRB2O60241 1585 aa34.84■■■■□ 3.17
CPSF1-202ENST00000527827 BRWD3Q6RI45 1802 aa34.84■■■■□ 3.17
CPSF1-202ENST00000527827 PLCH1Q4KWH8 1693 aa34.84■■■■□ 3.17
CPSF1-202ENST00000527827 ANKARQ7Z5J8 1434 aa34.83■■■■□ 3.17
CPSF1-202ENST00000527827 POGKQ9P215 609 aa34.83■■■■□ 3.17
CPSF1-202ENST00000527827 NWD2Q9ULI1 1742 aa34.82■■■■□ 3.16
CPSF1-202ENST00000527827 HAP1P54257 671 aaPredicted RBP34.82■■■■□ 3.16
CPSF1-202ENST00000527827 SRCAPQ6ZRS2 3230 aa34.8■■■■□ 3.16
CPSF1-202ENST00000527827 ARHGEF10O15013 1369 aa34.8■■■■□ 3.16
CPSF1-202ENST00000527827 PLEKHG5O94827 1062 aa34.8■■■■□ 3.16
CPSF1-202ENST00000527827 PMFBP1Q8TBY8 1022 aa34.8■■■■□ 3.16
CPSF1-202ENST00000527827 VPS72Q15906 364 aa34.78■■■■□ 3.16
CPSF1-202ENST00000527827 LMOD2Q6P5Q4 547 aa34.78■■■■□ 3.16
CPSF1-202ENST00000527827 ZRANB1Q9UGI0 708 aa34.78■■■■□ 3.16
CPSF1-202ENST00000527827 TRPM3Q9HCF6 1732 aaPredicted RBP34.77■■■■□ 3.16
CPSF1-202ENST00000527827 TRAK1Q9UPV9 953 aa34.75■■■■□ 3.15
CPSF1-202ENST00000527827 HIRIP3Q9BW71 556 aaPredicted RBP34.74■■■■□ 3.15
CPSF1-202ENST00000527827 BLMP54132 1417 aaPredicted RBP34.73■■■■□ 3.15
CPSF1-202ENST00000527827 SEPT12Q8IYM1 358 aa34.73■■■■□ 3.15
CPSF1-202ENST00000527827 ALS2Q96Q42 1657 aa34.71■■■■□ 3.15
CPSF1-202ENST00000527827 FAM83GA6ND36 823 aa34.71■■■■□ 3.15
CPSF1-202ENST00000527827 ONECUT3O60422 494 aaPredicted RBP34.71■■■■□ 3.15
CPSF1-202ENST00000527827 KDM2AQ9Y2K7 1162 aa34.71■■■■□ 3.15
CPSF1-202ENST00000527827 PRR36Q9H6K5 1346 aa34.71■■■■□ 3.15
CPSF1-202ENST00000527827 MINK1Q8N4C8 1332 aaPredicted RBP34.7■■■■□ 3.15
CPSF1-202ENST00000527827 DCAF11Q8TEB1 546 aa34.69■■■■□ 3.14
CPSF1-202ENST00000527827 TULP4Q9NRJ4 1543 aa34.69■■■■□ 3.14
CPSF1-202ENST00000527827 NRAPQ86VF7 1730 aa34.67■■■■□ 3.14
CPSF1-202ENST00000527827 CCDC9Q9Y3X0 531 aaKnown RBP34.67■■■■□ 3.14
CPSF1-202ENST00000527827 EIF3AQ14152 1382 aaKnown RBP34.66■■■■□ 3.14
CPSF1-202ENST00000527827 WASLO00401 505 aaPredicted RBP34.64■■■■□ 3.14
CPSF1-202ENST00000527827 GPRASP1Q5JY77 1395 aa34.63■■■■□ 3.13
CPSF1-202ENST00000527827 DEFB132Q7Z7B7 95 aa34.63■■■■□ 3.13
CPSF1-202ENST00000527827 CRYBG1Q9Y4K1 1723 aa34.61■■■■□ 3.13
CPSF1-202ENST00000527827 KRT27Q7Z3Y8 459 aa34.61■■■■□ 3.13
CPSF1-202ENST00000527827 COL14A1Q05707 1796 aaKnown RBP34.6■■■■□ 3.13
CPSF1-202ENST00000527827 STAC3Q96MF2 364 aa34.6■■■■□ 3.13
CPSF1-202ENST00000527827 ARHGEF28Q8N1W1 1705 aaKnown RBP34.6■■■■□ 3.13
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms