RNA–Protein interactions for RNA: ENST00000525435.1

CCS-202, Transcript of copper chaperone for superoxide dismutase, humanhuman

TSL 2

Gene CCS, Length 798 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCS-202ENST00000525435 PLEKHH1Q9ULM0 1364 aa17.57■□□□□ 0.4
CCS-202ENST00000525435 KNDC1Q76NI1 1749 aa17.57■□□□□ 0.4
CCS-202ENST00000525435 RALGAPBQ86X10 1494 aa17.56■□□□□ 0.4
CCS-202ENST00000525435 XIRP1Q702N8 1843 aaKnown RBP17.56■□□□□ 0.4
CCS-202ENST00000525435 TRPM1Q7Z4N2 1603 aa17.54■□□□□ 0.4
CCS-202ENST00000525435 CENPJQ9HC77 1338 aaPredicted RBP17.54■□□□□ 0.4
CCS-202ENST00000525435 SLC24A1O60721 1099 aa17.54■□□□□ 0.4
CCS-202ENST00000525435 PIP4K2BP78356 416 aa17.54■□□□□ 0.4
CCS-202ENST00000525435 EIF3AQ14152 1382 aaKnown RBP17.53■□□□□ 0.4
CCS-202ENST00000525435 SAFB2Q14151 953 aaKnown RBP eCLIP17.53■□□□□ 0.4
CCS-202ENST00000525435 WASLO00401 505 aaPredicted RBP17.51■□□□□ 0.39
CCS-202ENST00000525435 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.51■□□□□ 0.39
CCS-202ENST00000525435 MINK1Q8N4C8 1332 aaPredicted RBP17.49■□□□□ 0.39
CCS-202ENST00000525435 SCAF1Q9H7N4 1312 aaKnown RBP17.49■□□□□ 0.39
CCS-202ENST00000525435 MST1RQ04912 1400 aa17.49■□□□□ 0.39
CCS-202ENST00000525435 CDC42BPGQ6DT37 1551 aa17.48■□□□□ 0.39
CCS-202ENST00000525435 BRINP3Q76B58 766 aa17.47■□□□□ 0.39
CCS-202ENST00000525435 HIRIP3Q9BW71 556 aaPredicted RBP17.47■□□□□ 0.39
CCS-202ENST00000525435 SBNO2Q9Y2G9 1366 aa17.47■□□□□ 0.39
CCS-202ENST00000525435 C1orf167Q5SNV9 1468 aa17.47■□□□□ 0.39
CCS-202ENST00000525435 CDK19Q9BWU1 502 aa17.46■□□□□ 0.39
CCS-202ENST00000525435 NALCNQ8IZF0 1738 aa17.46■□□□□ 0.39
CCS-202ENST00000525435 EVC2Q86UK5 1308 aa17.45■□□□□ 0.38
CCS-202ENST00000525435 ARHGEF28Q8N1W1 1705 aaKnown RBP17.44■□□□□ 0.38
CCS-202ENST00000525435 ESCO1Q5FWF5 840 aa17.44■□□□□ 0.38
CCS-202ENST00000525435 ANKARQ7Z5J8 1434 aa17.44■□□□□ 0.38
CCS-202ENST00000525435 ADGRB2O60241 1585 aa17.44■□□□□ 0.38
CCS-202ENST00000525435 ST20-MTHFSA0A0A6YYL1 179 aa17.43■□□□□ 0.38
CCS-202ENST00000525435 PUS7Q96PZ0 661 aaKnown RBP17.43■□□□□ 0.38
CCS-202ENST00000525435 ORAI2Q96SN7 254 aa17.43■□□□□ 0.38
CCS-202ENST00000525435 HSPA1LP34931 641 aa17.42■□□□□ 0.38
CCS-202ENST00000525435 CCDC61Q9Y6R9 512 aa17.42■□□□□ 0.38
CCS-202ENST00000525435 USP47Q96K76 1375 aa17.41■□□□□ 0.38
CCS-202ENST00000525435 NUTM2FA1L443 756 aa17.41■□□□□ 0.38
CCS-202ENST00000525435 NUDT16Q96DE0 195 aaKnown RBP17.41■□□□□ 0.38
CCS-202ENST00000525435 TESK2Q96S53 571 aa17.41■□□□□ 0.38
CCS-202ENST00000525435 EIF4G2P78344 907 aaKnown RBP eCLIP17.4■□□□□ 0.382e-6■■■■■ 26.9
CCS-202ENST00000525435 SRPK2P78362 688 aaKnown RBP17.4■□□□□ 0.38
CCS-202ENST00000525435 PHF8Q9UPP1 1060 aa17.4■□□□□ 0.38
CCS-202ENST00000525435 NPHP3Q7Z494 1330 aa17.39■□□□□ 0.37
CCS-202ENST00000525435 PLEKHG3A1L390 1219 aa17.38■□□□□ 0.37
CCS-202ENST00000525435 PRR36Q9H6K5 1346 aa17.38■□□□□ 0.37
CCS-202ENST00000525435 TULP4Q9NRJ4 1543 aa17.37■□□□□ 0.37
CCS-202ENST00000525435 ZEB1P37275 1124 aaPredicted RBP17.37■□□□□ 0.37
CCS-202ENST00000525435 ROBO1Q9Y6N7 1651 aa17.36■□□□□ 0.37
CCS-202ENST00000525435 FMN2Q9NZ56 1722 aa17.36■□□□□ 0.37
CCS-202ENST00000525435 FOXO3O43524 673 aa17.36■□□□□ 0.37
CCS-202ENST00000525435 CDCA8Q53HL2 280 aa17.36■□□□□ 0.37
CCS-202ENST00000525435 LRRC59Q96AG4 307 aaKnown RBP17.36■□□□□ 0.37
CCS-202ENST00000525435 CABP2Q9NPB3 220 aa17.36■□□□□ 0.37
CCS-202ENST00000525435 SOS2Q07890 1332 aaPredicted RBP17.36■□□□□ 0.37
CCS-202ENST00000525435 TMF1P82094 1093 aa17.35■□□□□ 0.37
CCS-202ENST00000525435 PSME1Q06323 249 aa17.35■□□□□ 0.37
CCS-202ENST00000525435 ATAD2Q6PL18 1390 aa17.34■□□□□ 0.37
CCS-202ENST00000525435 AHDC1Q5TGY3 1603 aaPredicted RBP17.33■□□□□ 0.37
CCS-202ENST00000525435 NGDNQ8NEJ9 315 aaKnown RBP17.33■□□□□ 0.36
CCS-202ENST00000525435 QRICH2Q9H0J4 1663 aa17.32■□□□□ 0.36
CCS-202ENST00000525435 ATP7BP35670 1465 aa17.32■□□□□ 0.36
CCS-202ENST00000525435 KRT28Q7Z3Y7 464 aa17.32■□□□□ 0.36
CCS-202ENST00000525435 PMFBP1Q8TBY8 1022 aa17.32■□□□□ 0.36
CCS-202ENST00000525435 HSPA5P11021 654 aaKnown RBP17.31■□□□□ 0.36
CCS-202ENST00000525435 DDX17Q92841 729 aaKnown RBP17.31■□□□□ 0.36
CCS-202ENST00000525435 CABP1Q9NZU7 370 aa17.31■□□□□ 0.36
CCS-202ENST00000525435 ZNF692Q9BU19 519 aaPredicted RBP17.3■□□□□ 0.36
CCS-202ENST00000525435 POLR3AO14802 1390 aaPredicted RBP17.29■□□□□ 0.36
CCS-202ENST00000525435 JCADQ9P266 1359 aa17.29■□□□□ 0.36
CCS-202ENST00000525435 SBNO1A3KN83 1393 aa17.28■□□□□ 0.36
CCS-202ENST00000525435 DISP3Q9P2K9 1392 aa17.28■□□□□ 0.36
CCS-202ENST00000525435 ACEP12821 1306 aa17.28■□□□□ 0.36
CCS-202ENST00000525435 PPIP5K1Q6PFW1 1433 aa17.28■□□□□ 0.36
CCS-202ENST00000525435 USP32Q8NFA0 1604 aa17.28■□□□□ 0.36
CCS-202ENST00000525435 BRD4O60885 1362 aaPredicted RBP17.28■□□□□ 0.36
CCS-202ENST00000525435 NINLQ9Y2I6 1382 aa17.28■□□□□ 0.36
CCS-202ENST00000525435 KIF1AQ12756 1690 aa17.27■□□□□ 0.36
CCS-202ENST00000525435 NHSL1Q5SYE7 1610 aa17.26■□□□□ 0.35
CCS-202ENST00000525435 PXDNQ92626 1479 aa17.25■□□□□ 0.35
CCS-202ENST00000525435 SPATA31A6Q5VVP1 1343 aa17.25■□□□□ 0.35
CCS-202ENST00000525435 SPATA31A3Q5VYP0 1347 aa17.25■□□□□ 0.35
CCS-202ENST00000525435 XPCQ01831 940 aaPredicted RBP17.25■□□□□ 0.35
CCS-202ENST00000525435 TERF2IPQ9NYB0 399 aa17.24■□□□□ 0.35
CCS-202ENST00000525435 COL16A1Q07092 1604 aaPredicted RBP17.24■□□□□ 0.35
CCS-202ENST00000525435 PHLPP1O60346 1717 aa17.24■□□□□ 0.35
CCS-202ENST00000525435 TMC1Q8TDI8 760 aa17.23■□□□□ 0.35
CCS-202ENST00000525435 SLC12A5Q9H2X9 1139 aa17.23■□□□□ 0.35
CCS-202ENST00000525435 ARHGEF10O15013 1369 aa17.22■□□□□ 0.35
CCS-202ENST00000525435 RGPD8O14715 1765 aaPredicted RBP17.22■□□□□ 0.35
CCS-202ENST00000525435 CPSF1Q10570 1443 aaKnown RBP17.21■□□□□ 0.35
CCS-202ENST00000525435 ITSN1Q15811 1721 aa17.21■□□□□ 0.35
CCS-202ENST00000525435 PNPLA6Q8IY17 1366 aa17.21■□□□□ 0.35
CCS-202ENST00000525435 HDGFL2Q7Z4V5 671 aaPredicted RBP17.21■□□□□ 0.35
CCS-202ENST00000525435 PAK3O75914 559 aaPredicted RBP17.19■□□□□ 0.34
CCS-202ENST00000525435 TNS3Q68CZ2 1445 aa17.19■□□□□ 0.34
CCS-202ENST00000525435 TOPAZ1Q8N9V7 1692 aa17.19■□□□□ 0.34
CCS-202ENST00000525435 USP6P35125 1406 aa17.18■□□□□ 0.34
CCS-202ENST00000525435 LMOD2Q6P5Q4 547 aa17.17■□□□□ 0.34
CCS-202ENST00000525435 SSH2Q76I76 1423 aa17.17■□□□□ 0.34
CCS-202ENST00000525435 TTC21AQ8NDW8 1320 aa17.17■□□□□ 0.34
CCS-202ENST00000525435 KTN1Q86UP2 1357 aaKnown RBP17.16■□□□□ 0.34
CCS-202ENST00000525435 ABTB2Q8N961 1025 aa17.16■□□□□ 0.34
CCS-202ENST00000525435 MED1Q15648 1581 aaPredicted RBP17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms