RNA–Protein interactions for RNA: ENST00000524927.1

NEDD8-203, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2 BASIC

Gene NEDD8, Length 653 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-203ENST00000524927 NBPF3Q9H094 633 aa12.56□□□□□ -0.4
NEDD8-203ENST00000524927 MAGI2Q86UL8 1455 aa12.55□□□□□ -0.4
NEDD8-203ENST00000524927 A0A0G2JS52 829 aa12.55□□□□□ -0.4
NEDD8-203ENST00000524927 TESPA1A2RU30 521 aaPredicted RBP12.55□□□□□ -0.4
NEDD8-203ENST00000524927 BCAMP50895 628 aa12.55□□□□□ -0.4
NEDD8-203ENST00000524927 TYW1BQ6NUM6 668 aa12.55□□□□□ -0.4
NEDD8-203ENST00000524927 EFCAB5A4FU69 1503 aa12.55□□□□□ -0.4
NEDD8-203ENST00000524927 ZFYVE16Q7Z3T8 1539 aa12.55□□□□□ -0.4
NEDD8-203ENST00000524927 KIAA0556O60303 1618 aa12.55□□□□□ -0.4
NEDD8-203ENST00000524927 ZMYM4Q5VZL5 1548 aa12.54□□□□□ -0.4
NEDD8-203ENST00000524927 DPYSL4O14531 572 aa12.54□□□□□ -0.4
NEDD8-203ENST00000524927 PHF14O94880 888 aa12.54□□□□□ -0.4
NEDD8-203ENST00000524927 SMYD5Q6GMV2 418 aa12.54□□□□□ -0.4
NEDD8-203ENST00000524927 POTEAQ6S8J7 498 aa12.54□□□□□ -0.4
NEDD8-203ENST00000524927 KIAA1468Q9P260 1216 aa12.54□□□□□ -0.4
NEDD8-203ENST00000524927 ARIH1Q9Y4X5 557 aaPredicted RBP12.54□□□□□ -0.4
NEDD8-203ENST00000524927 RICTORQ6R327 1708 aa12.54□□□□□ -0.4
NEDD8-203ENST00000524927 UGGT2Q9NYU1 1516 aa12.53□□□□□ -0.4
NEDD8-203ENST00000524927 C6orf132Q5T0Z8 1188 aa12.51□□□□□ -0.41
NEDD8-203ENST00000524927 TRAPPC8Q9Y2L5 1435 aa12.5□□□□□ -0.41
NEDD8-203ENST00000524927 ABCA8O94911 1581 aa12.5□□□□□ -0.41
NEDD8-203ENST00000524927 CAMSAP1Q5T5Y3 1602 aa12.49□□□□□ -0.41
NEDD8-203ENST00000524927 PTPRKQ15262 1439 aa12.49□□□□□ -0.41
NEDD8-203ENST00000524927 FBXW7Q969H0 707 aa12.49□□□□□ -0.41
NEDD8-203ENST00000524927 SEPT9Q9UHD8 586 aaPredicted RBP12.49□□□□□ -0.41
NEDD8-203ENST00000524927 ANKK1Q8NFD2 765 aa12.48□□□□□ -0.41
NEDD8-203ENST00000524927 SOWAHBA6NEL2 793 aa12.47□□□□□ -0.41
NEDD8-203ENST00000524927 DDX12PQ92771 950 aa12.47□□□□□ -0.41
NEDD8-203ENST00000524927 RBM33Q96EV2 1170 aaKnown RBP12.47□□□□□ -0.41
NEDD8-203ENST00000524927 ZFRQ96KR1 1074 aaKnown RBP12.47□□□□□ -0.41
NEDD8-203ENST00000524927 SETD1AO15047 1707 aaKnown RBP12.46□□□□□ -0.41
NEDD8-203ENST00000524927 WBP1LQ9NX94 342 aa12.46□□□□□ -0.41
NEDD8-203ENST00000524927 CPS1P31327 1500 aa12.46□□□□□ -0.42
NEDD8-203ENST00000524927 CARMIL1Q5VZK9 1371 aa12.45□□□□□ -0.42
NEDD8-203ENST00000524927 ATP10AO60312 1499 aa12.45□□□□□ -0.42
NEDD8-203ENST00000524927 ITGBL1O95965 494 aaPredicted RBP12.44□□□□□ -0.42
NEDD8-203ENST00000524927 ZC3H15Q8WU90 426 aaKnown RBP12.44□□□□□ -0.42
NEDD8-203ENST00000524927 C9orf84Q5VXU9 1444 aa12.44□□□□□ -0.42
NEDD8-203ENST00000524927 KIF27Q86VH2 1401 aa12.44□□□□□ -0.42
NEDD8-203ENST00000524927 LAPTM4BQ86VI4 370 aa12.43□□□□□ -0.42
NEDD8-203ENST00000524927 EPAS1Q99814 870 aa12.43□□□□□ -0.42
NEDD8-203ENST00000524927 IRX2Q9BZI1 471 aaPredicted RBP12.43□□□□□ -0.42
NEDD8-203ENST00000524927 C3P01024 1663 aa12.42□□□□□ -0.42
NEDD8-203ENST00000524927 PLA2R1Q13018 1463 aa12.42□□□□□ -0.42
NEDD8-203ENST00000524927 ALKQ9UM73 1620 aa12.42□□□□□ -0.42
NEDD8-203ENST00000524927 TRIM6-TRIM34B2RNG4 842 aa12.41□□□□□ -0.42
NEDD8-203ENST00000524927 TSR1Q2NL82 804 aaKnown RBP12.41□□□□□ -0.42
NEDD8-203ENST00000524927 SPDYE16A6NNV3 312 aaPredicted RBP12.4□□□□□ -0.42
NEDD8-203ENST00000524927 ONECUT3O60422 494 aaPredicted RBP12.4□□□□□ -0.42
NEDD8-203ENST00000524927 HECW1Q76N89 1606 aa12.4□□□□□ -0.42
NEDD8-203ENST00000524927 TCOF1Q13428 1488 aaKnown RBP12.4□□□□□ -0.43
NEDD8-203ENST00000524927 MLLT3P42568 568 aaPredicted RBP12.39□□□□□ -0.43
NEDD8-203ENST00000524927 PRIM1P49642 420 aaKnown RBP12.39□□□□□ -0.43
NEDD8-203ENST00000524927 TSKSQ9UJT2 592 aa12.39□□□□□ -0.43
NEDD8-203ENST00000524927 ATP10BO94823 1461 aa12.39□□□□□ -0.43
NEDD8-203ENST00000524927 CFAP74Q9C0B2 1584 aa12.39□□□□□ -0.43
NEDD8-203ENST00000524927 RAPGEF2Q9Y4G8 1499 aa12.38□□□□□ -0.43
NEDD8-203ENST00000524927 C3orf80F5H4A9 247 aa12.36□□□□□ -0.43
NEDD8-203ENST00000524927 PDIA6Q15084 440 aa12.36□□□□□ -0.43
NEDD8-203ENST00000524927 NPATQ14207 1427 aa12.36□□□□□ -0.43
NEDD8-203ENST00000524927 SHANK2Q9UPX8 1470 aa12.35□□□□□ -0.43
NEDD8-203ENST00000524927 RBM26Q5T8P6 1007 aaKnown RBP12.35□□□□□ -0.43
NEDD8-203ENST00000524927 FAM198AQ9UFP1 575 aa12.35□□□□□ -0.43
NEDD8-203ENST00000524927 GOLGA3Q08378 1498 aa12.34□□□□□ -0.43
NEDD8-203ENST00000524927 FAM98CQ17RN3 349 aaKnown RBP12.34□□□□□ -0.43
NEDD8-203ENST00000524927 ESF1Q9H501 851 aaKnown RBP12.34□□□□□ -0.43
NEDD8-203ENST00000524927 EN1Q05925 392 aaPredicted RBP12.33□□□□□ -0.44
NEDD8-203ENST00000524927 SMAPO00193 183 aa12.32□□□□□ -0.44
NEDD8-203ENST00000524927 HPS5Q9UPZ3 1129 aa12.32□□□□□ -0.44
NEDD8-203ENST00000524927 CNTLNQ9NXG0 1405 aa12.31□□□□□ -0.44
NEDD8-203ENST00000524927 ARID3CA6NKF2 412 aa12.31□□□□□ -0.44
NEDD8-203ENST00000524927 GPIHBP1Q8IV16 184 aa12.31□□□□□ -0.44
NEDD8-203ENST00000524927 SLC24A3Q9HC58 644 aa12.31□□□□□ -0.44
NEDD8-203ENST00000524927 ZMYND10O75800 440 aa12.3□□□□□ -0.44
NEDD8-203ENST00000524927 FAM9AQ8IZU1 332 aaPredicted RBP12.3□□□□□ -0.44
NEDD8-203ENST00000524927 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.3□□□□□ -0.44
NEDD8-203ENST00000524927 AGLP35573 1532 aa12.29□□□□□ -0.44
NEDD8-203ENST00000524927 MAP3K7O43318 606 aa12.29□□□□□ -0.44
NEDD8-203ENST00000524927 KCNC4Q03721 635 aa12.29□□□□□ -0.44
NEDD8-203ENST00000524927 TSR3Q9UJK0 312 aaKnown RBP12.29□□□□□ -0.44
NEDD8-203ENST00000524927 ZNF142P52746 1687 aaPredicted RBP12.28□□□□□ -0.44
NEDD8-203ENST00000524927 SCAPERQ9BY12 1400 aa12.28□□□□□ -0.44
NEDD8-203ENST00000524927 GRXCR2A6NFK2 248 aa12.27□□□□□ -0.45
NEDD8-203ENST00000524927 NYAP1Q6ZVC0 841 aa12.27□□□□□ -0.45
NEDD8-203ENST00000524927 LRCH3Q96II8 777 aa12.27□□□□□ -0.45
NEDD8-203ENST00000524927 REREQ9P2R6 1566 aa12.26□□□□□ -0.45
NEDD8-203ENST00000524927 CDCA7LQ96GN5 454 aa12.25□□□□□ -0.45
NEDD8-203ENST00000524927 BARGINQ6ZT62 677 aa12.24□□□□□ -0.45
NEDD8-203ENST00000524927 KRI1Q8N9T8 703 aaKnown RBP12.24□□□□□ -0.45
NEDD8-203ENST00000524927 CEP170BQ9Y4F5 1589 aaPredicted RBP12.24□□□□□ -0.45
NEDD8-203ENST00000524927 SUPT6HQ7KZ85 1726 aaKnown RBP12.23□□□□□ -0.45
NEDD8-203ENST00000524927 RNF17Q9BXT8 1623 aaKnown RBP12.23□□□□□ -0.45
NEDD8-203ENST00000524927 SAMD7Q7Z3H4 446 aa12.23□□□□□ -0.45
NEDD8-203ENST00000524927 PACS2Q86VP3 889 aa12.23□□□□□ -0.45
NEDD8-203ENST00000524927 VWDEQ8N2E2 1590 aa12.22□□□□□ -0.45
NEDD8-203ENST00000524927 LCE2BO14633 110 aa12.22□□□□□ -0.45
NEDD8-203ENST00000524927 TRIM52Q96A61 297 aa12.22□□□□□ -0.45
NEDD8-203ENST00000524927 CDHR5Q9HBB8 845 aa12.22□□□□□ -0.45
NEDD8-203ENST00000524927 MYO3AQ8NEV4 1616 aa12.22□□□□□ -0.45
NEDD8-203ENST00000524927 LRRC7Q96NW7 1537 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms