RNA–Protein interactions for RNA: ENST00000524556.1

CSTF3-204, Transcript of cleavage stimulation factor subunit 3, humanhuman

TSL 3

Gene CSTF3, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF3-204ENST00000524556 PPLO60437 1756 aa22.28■■□□□ 1.16
CSTF3-204ENST00000524556 RRBP1Q9P2E9 1410 aaKnown RBP22.27■■□□□ 1.16
CSTF3-204ENST00000524556 ATRNO75882 1429 aa22.25■■□□□ 1.15
CSTF3-204ENST00000524556 EP400Q96L91 3159 aa22.25■■□□□ 1.15
CSTF3-204ENST00000524556 ESCO1Q5FWF5 840 aa22.23■■□□□ 1.15
CSTF3-204ENST00000524556 NPHP3Q7Z494 1330 aa22.23■■□□□ 1.15
CSTF3-204ENST00000524556 MYOM2P54296 1465 aa22.22■■□□□ 1.15
CSTF3-204ENST00000524556 CDC42BPGQ6DT37 1551 aa22.22■■□□□ 1.15
CSTF3-204ENST00000524556 SLC4A1APQ9BWU0 796 aaKnown RBP22.22■■□□□ 1.15
CSTF3-204ENST00000524556 MARF1Q9Y4F3 1742 aaKnown RBP22.22■■□□□ 1.15
CSTF3-204ENST00000524556 PXDNQ92626 1479 aa22.21■■□□□ 1.15
CSTF3-204ENST00000524556 BCL9LQ86UU0 1499 aa22.19■■□□□ 1.14
CSTF3-204ENST00000524556 FOXO3O43524 673 aa22.17■■□□□ 1.14
CSTF3-204ENST00000524556 ADGRF5Q8IZF2 1346 aa22.16■■□□□ 1.14
CSTF3-204ENST00000524556 XPCQ01831 940 aaPredicted RBP22.16■■□□□ 1.14
CSTF3-204ENST00000524556 FOXD1Q16676 465 aa22.16■■□□□ 1.14
CSTF3-204ENST00000524556 LRPPRCP42704 1394 aaKnown RBP22.15■■□□□ 1.14
CSTF3-204ENST00000524556 CCDC125Q86Z20 511 aa22.15■■□□□ 1.14
CSTF3-204ENST00000524556 WAPLQ7Z5K2 1190 aa22.14■■□□□ 1.13
CSTF3-204ENST00000524556 STK26Q9P289 416 aa22.14■■□□□ 1.13
CSTF3-204ENST00000524556 ZRANB1Q9UGI0 708 aa22.14■■□□□ 1.13
CSTF3-204ENST00000524556 TECPR2O15040 1411 aa22.14■■□□□ 1.13
CSTF3-204ENST00000524556 GJD4Q96KN9 370 aaPredicted RBP22.13■■□□□ 1.13
CSTF3-204ENST00000524556 NUTM2FA1L443 756 aa22.12■■□□□ 1.13
CSTF3-204ENST00000524556 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.11■■□□□ 1.13
CSTF3-204ENST00000524556 ABCC11Q96J66 1382 aa22.11■■□□□ 1.13
CSTF3-204ENST00000524556 RGL3Q3MIN7 710 aa22.1■■□□□ 1.13
CSTF3-204ENST00000524556 KNDC1Q76NI1 1749 aa22.1■■□□□ 1.13
CSTF3-204ENST00000524556 IFT172Q9UG01 1749 aa22.1■■□□□ 1.13
CSTF3-204ENST00000524556 SPATA31E1Q6ZUB1 1445 aa22.09■■□□□ 1.13
CSTF3-204ENST00000524556 ANKRD30BQ9BXX2 1392 aa22.09■■□□□ 1.13
CSTF3-204ENST00000524556 FMN2Q9NZ56 1722 aa22.09■■□□□ 1.13
CSTF3-204ENST00000524556 CCDC144AA2RUR9 1427 aa22.08■■□□□ 1.13
CSTF3-204ENST00000524556 TMEM132EQ6IEE7 984 aa22.08■■□□□ 1.13
CSTF3-204ENST00000524556 UNC5CLQ8IV45 518 aa22.08■■□□□ 1.13
CSTF3-204ENST00000524556 PLEKHH1Q9ULM0 1364 aa22.08■■□□□ 1.12
CSTF3-204ENST00000524556 SPATA31A3Q5VYP0 1347 aa22.07■■□□□ 1.12
CSTF3-204ENST00000524556 KIF1AQ12756 1690 aa22.07■■□□□ 1.12
CSTF3-204ENST00000524556 SLIT2O94813 1529 aa22.06■■□□□ 1.12
CSTF3-204ENST00000524556 GLI3P10071 1580 aa22.05■■□□□ 1.12
CSTF3-204ENST00000524556 RALGAPBQ86X10 1494 aa22.05■■□□□ 1.12
CSTF3-204ENST00000524556 KRT28Q7Z3Y7 464 aa22.04■■□□□ 1.12
CSTF3-204ENST00000524556 PIK3C2GO75747 1445 aa22.04■■□□□ 1.12
CSTF3-204ENST00000524556 RGPD8O14715 1765 aaPredicted RBP22.03■■□□□ 1.12
CSTF3-204ENST00000524556 SIRT1Q96EB6 747 aa22.03■■□□□ 1.12
CSTF3-204ENST00000524556 YTHDC2Q9H6S0 1430 aaKnown RBP22.03■■□□□ 1.12
CSTF3-204ENST00000524556 BRWD3Q6RI45 1802 aa22.03■■□□□ 1.12
CSTF3-204ENST00000524556 USP32Q8NFA0 1604 aa22.02■■□□□ 1.12
CSTF3-204ENST00000524556 MPHOSPH9Q99550 1183 aa22.02■■□□□ 1.12
CSTF3-204ENST00000524556 BLMP54132 1417 aaPredicted RBP22■■□□□ 1.11
CSTF3-204ENST00000524556 PHF8Q9UPP1 1060 aa21.99■■□□□ 1.11
CSTF3-204ENST00000524556 PSME1Q06323 249 aa21.98■■□□□ 1.11
CSTF3-204ENST00000524556 TNS3Q68CZ2 1445 aa21.97■■□□□ 1.11
CSTF3-204ENST00000524556 C14orf93Q9H972 538 aaKnown RBP21.97■■□□□ 1.11
CSTF3-204ENST00000524556 HAP1P54257 671 aaPredicted RBP21.96■■□□□ 1.11
CSTF3-204ENST00000524556 VPS72Q15906 364 aa21.96■■□□□ 1.11
CSTF3-204ENST00000524556 SEPT12Q8IYM1 358 aa21.96■■□□□ 1.11
CSTF3-204ENST00000524556 CABLES1Q8TDN4 633 aa21.96■■□□□ 1.11
CSTF3-204ENST00000524556 NWD2Q9ULI1 1742 aa21.95■■□□□ 1.1
CSTF3-204ENST00000524556 PLCH1Q4KWH8 1693 aa21.95■■□□□ 1.1
CSTF3-204ENST00000524556 ONECUT3O60422 494 aaPredicted RBP21.94■■□□□ 1.1
CSTF3-204ENST00000524556 DEFB132Q7Z7B7 95 aa21.94■■□□□ 1.1
CSTF3-204ENST00000524556 SBNO1A3KN83 1393 aa21.94■■□□□ 1.1
CSTF3-204ENST00000524556 DHX57Q6P158 1386 aaKnown RBP21.93■■□□□ 1.1
CSTF3-204ENST00000524556 NRXN1Q9ULB1 1477 aa21.93■■□□□ 1.1
CSTF3-204ENST00000524556 ABCA3Q99758 1704 aa21.92■■□□□ 1.1
CSTF3-204ENST00000524556 SF3B2Q13435 895 aaKnown RBP21.92■■□□□ 1.1
CSTF3-204ENST00000524556 CFAP70Q5T0N1 1121 aa21.92■■□□□ 1.1
CSTF3-204ENST00000524556 PLEKHG5O94827 1062 aa21.91■■□□□ 1.1
CSTF3-204ENST00000524556 CCDC9Q9Y3X0 531 aaKnown RBP21.91■■□□□ 1.1
CSTF3-204ENST00000524556 ARHGEF10O15013 1369 aa21.9■■□□□ 1.1
CSTF3-204ENST00000524556 LMOD2Q6P5Q4 547 aa21.9■■□□□ 1.1
CSTF3-204ENST00000524556 KRT27Q7Z3Y8 459 aa21.89■■□□□ 1.09
CSTF3-204ENST00000524556 PRAM1Q96QH2 718 aa21.89■■□□□ 1.09
CSTF3-204ENST00000524556 FAM83GA6ND36 823 aa21.88■■□□□ 1.09
CSTF3-204ENST00000524556 SAFB2Q14151 953 aaKnown RBP eCLIP21.88■■□□□ 1.09
CSTF3-204ENST00000524556 PMFBP1Q8TBY8 1022 aa21.86■■□□□ 1.09
CSTF3-204ENST00000524556 ANKARQ7Z5J8 1434 aa21.86■■□□□ 1.09
CSTF3-204ENST00000524556 POGKQ9P215 609 aa21.85■■□□□ 1.09
CSTF3-204ENST00000524556 DLC1Q96QB1 1528 aa21.85■■□□□ 1.09
CSTF3-204ENST00000524556 NRAPQ86VF7 1730 aa21.83■■□□□ 1.09
CSTF3-204ENST00000524556 TRPM3Q9HCF6 1732 aaPredicted RBP21.83■■□□□ 1.09
CSTF3-204ENST00000524556 ACIN1Q9UKV3 1341 aaKnown RBP21.83■■□□□ 1.09
CSTF3-204ENST00000524556 ADGRB2O60241 1585 aa21.82■■□□□ 1.08
CSTF3-204ENST00000524556 LRP5O75197 1615 aa21.81■■□□□ 1.08
CSTF3-204ENST00000524556 ALS2Q96Q42 1657 aa21.8■■□□□ 1.08
CSTF3-204ENST00000524556 A0A0G2JS52 829 aa21.8■■□□□ 1.08
CSTF3-204ENST00000524556 BAG6P46379 1132 aa21.8■■□□□ 1.08
CSTF3-204ENST00000524556 MYT1Q01538 1121 aa21.8■■□□□ 1.08
CSTF3-204ENST00000524556 FAM98CQ17RN3 349 aaKnown RBP21.8■■□□□ 1.08
CSTF3-204ENST00000524556 BTG4Q9NY30 223 aa21.8■■□□□ 1.08
CSTF3-204ENST00000524556 COL14A1Q05707 1796 aaKnown RBP21.79■■□□□ 1.08
CSTF3-204ENST00000524556 ADGRB1O14514 1584 aa21.78■■□□□ 1.08
CSTF3-204ENST00000524556 GPRASP1Q5JY77 1395 aa21.77■■□□□ 1.08
CSTF3-204ENST00000524556 HIRIP3Q9BW71 556 aaPredicted RBP21.77■■□□□ 1.08
CSTF3-204ENST00000524556 TRAK1Q9UPV9 953 aa21.77■■□□□ 1.08
CSTF3-204ENST00000524556 EIF3AQ14152 1382 aaKnown RBP21.75■■□□□ 1.07
CSTF3-204ENST00000524556 PSDA5PKW4 1024 aaPredicted RBP21.75■■□□□ 1.07
CSTF3-204ENST00000524556 MINK1Q8N4C8 1332 aaPredicted RBP21.75■■□□□ 1.07
CSTF3-204ENST00000524556 PRR36Q9H6K5 1346 aa21.75■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms