RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 IPO8O15397 1037 aaKnown RBP12.96□□□□□ -0.33
MCF2-209ENST00000520602 FBLN1P23142 703 aa12.96□□□□□ -0.33
MCF2-209ENST00000520602 RWDD1Q9H446 243 aaPredicted RBP12.96□□□□□ -0.33
MCF2-209ENST00000520602 NPATQ14207 1427 aa12.96□□□□□ -0.33
MCF2-209ENST00000520602 POGZQ7Z3K3 1410 aa12.96□□□□□ -0.33
MCF2-209ENST00000520602 PLEKHH1Q9ULM0 1364 aa12.96□□□□□ -0.34
MCF2-209ENST00000520602 ZFYVE16Q7Z3T8 1539 aa12.95□□□□□ -0.34
MCF2-209ENST00000520602 CLASP1Q7Z460 1538 aa12.95□□□□□ -0.34
MCF2-209ENST00000520602 ZKSCAN2Q63HK3 967 aa12.95□□□□□ -0.34
MCF2-209ENST00000520602 PLXNC1O60486 1568 aa12.95□□□□□ -0.34
MCF2-209ENST00000520602 SLC4A3P48751 1232 aa12.95□□□□□ -0.34
MCF2-209ENST00000520602 MAGI2Q86UL8 1455 aa12.95□□□□□ -0.34
MCF2-209ENST00000520602 MSH5O43196 834 aa12.94□□□□□ -0.34
MCF2-209ENST00000520602 PMFBP1Q8TBY8 1022 aa12.94□□□□□ -0.34
MCF2-209ENST00000520602 PRKAR2BP31323 418 aa12.94□□□□□ -0.34
MCF2-209ENST00000520602 CEBPAP49715 358 aaPredicted RBP12.94□□□□□ -0.34
MCF2-209ENST00000520602 EXOSC9Q06265 439 aaKnown RBP12.94□□□□□ -0.34
MCF2-209ENST00000520602 PTPRTO14522 1441 aa12.94□□□□□ -0.34
MCF2-209ENST00000520602 LTV1Q96GA3 475 aaPredicted RBP12.94□□□□□ -0.34
MCF2-209ENST00000520602 SHROOM2Q13796 1616 aa12.93□□□□□ -0.34
MCF2-209ENST00000520602 ATAD2Q6PL18 1390 aa12.93□□□□□ -0.34
MCF2-209ENST00000520602 IQGAP3Q86VI3 1631 aa12.93□□□□□ -0.34
MCF2-209ENST00000520602 SPINK5Q9NQ38 1064 aaPredicted RBP12.93□□□□□ -0.34
MCF2-209ENST00000520602 HSP90AA1P07900 732 aaKnown RBP12.93□□□□□ -0.34
MCF2-209ENST00000520602 CALD1Q05682 793 aaKnown RBP12.93□□□□□ -0.34
MCF2-209ENST00000520602 UNC13BO14795 1591 aa12.92□□□□□ -0.34
MCF2-209ENST00000520602 AMPHP49418 695 aa12.92□□□□□ -0.34
MCF2-209ENST00000520602 DZIP1LQ8IYY4 767 aaKnown RBP12.92□□□□□ -0.34
MCF2-209ENST00000520602 YEATS2Q9ULM3 1422 aa12.92□□□□□ -0.34
MCF2-209ENST00000520602 FAM161AQ3B820 660 aa12.92□□□□□ -0.34
MCF2-209ENST00000520602 RTF1Q92541 710 aaKnown RBP12.92□□□□□ -0.34
MCF2-209ENST00000520602 TRPM2O94759 1503 aa12.91□□□□□ -0.34
MCF2-209ENST00000520602 BECN1Q14457 450 aa12.91□□□□□ -0.34
MCF2-209ENST00000520602 RRS1Q15050 365 aaKnown RBP12.91□□□□□ -0.34
MCF2-209ENST00000520602 APBB1O00213 710 aa12.9□□□□□ -0.34
MCF2-209ENST00000520602 NUTM2GQ5VZR2 741 aa12.9□□□□□ -0.34
MCF2-209ENST00000520602 WDR63Q8IWG1 891 aa12.9□□□□□ -0.34
MCF2-209ENST00000520602 NUDT16Q96DE0 195 aaKnown RBP12.9□□□□□ -0.34
MCF2-209ENST00000520602 FYB1O15117 783 aa12.9□□□□□ -0.34
MCF2-209ENST00000520602 TMPOP42166 694 aaKnown RBP12.9□□□□□ -0.34
MCF2-209ENST00000520602 PRDM15P57071 1507 aaPredicted RBP12.9□□□□□ -0.35
MCF2-209ENST00000520602 NME9Q86XW9 330 aa12.89□□□□□ -0.35
MCF2-209ENST00000520602 PDE3AQ14432 1141 aa12.89□□□□□ -0.35
MCF2-209ENST00000520602 DMRT2Q9Y5R5 561 aa12.89□□□□□ -0.35
MCF2-209ENST00000520602 RNF123Q5XPI4 1314 aa12.88□□□□□ -0.35
MCF2-209ENST00000520602 THUMPD2Q9BTF0 503 aaKnown RBP12.88□□□□□ -0.35
MCF2-209ENST00000520602 BACH2Q9BYV9 841 aa12.88□□□□□ -0.35
MCF2-209ENST00000520602 CCDC61Q9Y6R9 512 aa12.88□□□□□ -0.35
MCF2-209ENST00000520602 TRPM1Q7Z4N2 1603 aa12.88□□□□□ -0.35
MCF2-209ENST00000520602 SPRYD3Q8NCJ5 442 aa12.88□□□□□ -0.35
MCF2-209ENST00000520602 EMILIN1Q9Y6C2 1016 aa12.87□□□□□ -0.35
MCF2-209ENST00000520602 PIK3C2GO75747 1445 aa12.87□□□□□ -0.35
MCF2-209ENST00000520602 LMOD3Q0VAK6 560 aa12.87□□□□□ -0.35
MCF2-209ENST00000520602 ANKRD36BQ8N2N9 1353 aa12.87□□□□□ -0.35
MCF2-209ENST00000520602 RARSP54136 660 aaKnown RBP12.87□□□□□ -0.35
MCF2-209ENST00000520602 ARXQ96QS3 562 aa12.87□□□□□ -0.35
MCF2-209ENST00000520602 NKTRP30414 1462 aaKnown RBP12.87□□□□□ -0.35
MCF2-209ENST00000520602 CHMP4BQ9H444 224 aaKnown RBP12.86□□□□□ -0.35
MCF2-209ENST00000520602 WASLO00401 505 aaPredicted RBP12.86□□□□□ -0.35
MCF2-209ENST00000520602 ARAP3Q8WWN8 1544 aa12.86□□□□□ -0.35
MCF2-209ENST00000520602 CLTCL1P53675 1640 aa12.86□□□□□ -0.35
MCF2-209ENST00000520602 MLH3Q9UHC1 1453 aa12.85□□□□□ -0.35
MCF2-209ENST00000520602 NEO1Q92859 1461 aa12.85□□□□□ -0.35
MCF2-209ENST00000520602 NCKAP5LQ9HCH0 1330 aa12.85□□□□□ -0.35
MCF2-209ENST00000520602 ERVK-7P63135 1459 aa12.85□□□□□ -0.35
MCF2-209ENST00000520602 DEKP35659 375 aaKnown RBP12.84□□□□□ -0.35
MCF2-209ENST00000520602 DDX19BQ9UMR2 479 aa12.84□□□□□ -0.35
MCF2-209ENST00000520602 POLR3AO14802 1390 aaPredicted RBP12.84□□□□□ -0.35
MCF2-209ENST00000520602 NPC1L1Q9UHC9 1359 aa12.84□□□□□ -0.35
MCF2-209ENST00000520602 MFAP1P55081 439 aaKnown RBP12.84□□□□□ -0.35
MCF2-209ENST00000520602 SLC4A10Q6U841 1118 aa12.84□□□□□ -0.35
MCF2-209ENST00000520602 SLKQ9H2G2 1235 aaPredicted RBP12.84□□□□□ -0.35
MCF2-209ENST00000520602 NOB1Q9ULX3 412 aaKnown RBP12.84□□□□□ -0.35
MCF2-209ENST00000520602 A0A1W2PP64 1363 aa12.84□□□□□ -0.35
MCF2-209ENST00000520602 SULT6B1Q6IMI4 303 aa12.84□□□□□ -0.35
MCF2-209ENST00000520602 ZRANB1Q9UGI0 708 aa12.84□□□□□ -0.35
MCF2-209ENST00000520602 PPP6R1Q9UPN7 881 aa12.84□□□□□ -0.35
MCF2-209ENST00000520602 E9PCH4 1651 aa12.84□□□□□ -0.35
MCF2-209ENST00000520602 TET3O43151 1660 aa12.83□□□□□ -0.36
MCF2-209ENST00000520602 FCHSD2O94868 740 aa12.83□□□□□ -0.36
MCF2-209ENST00000520602 NLRP6P59044 892 aa12.83□□□□□ -0.36
MCF2-209ENST00000520602 GNAI1P63096 354 aa12.83□□□□□ -0.36
MCF2-209ENST00000520602 BLMP54132 1417 aaPredicted RBP12.83□□□□□ -0.36
MCF2-209ENST00000520602 HAP1P54257 671 aaPredicted RBP12.82□□□□□ -0.36
MCF2-209ENST00000520602 ZNF692Q9BU19 519 aaPredicted RBP12.82□□□□□ -0.36
MCF2-209ENST00000520602 SSH1Q8WYL5 1049 aa12.82□□□□□ -0.36
MCF2-209ENST00000520602 TNNQ9UQP3 1299 aa12.82□□□□□ -0.36
MCF2-209ENST00000520602 ANKRD45Q5TZF3 282 aa12.81□□□□□ -0.36
MCF2-209ENST00000520602 YTHDC2Q9H6S0 1430 aaKnown RBP12.81□□□□□ -0.36
MCF2-209ENST00000520602 ABCA9Q8IUA7 1624 aa12.81□□□□□ -0.36
MCF2-209ENST00000520602 RIMS2Q9UQ26 1411 aa12.81□□□□□ -0.36
MCF2-209ENST00000520602 DCTN1Q14203 1278 aa12.81□□□□□ -0.36
MCF2-209ENST00000520602 THEMISQ8N1K5 641 aaPredicted RBP12.81□□□□□ -0.36
MCF2-209ENST00000520602 PDZRN3Q9UPQ7 1066 aa12.81□□□□□ -0.36
MCF2-209ENST00000520602 KIF16BQ96L93 1317 aa12.8□□□□□ -0.36
MCF2-209ENST00000520602 EFCAB6Q5THR3 1501 aa12.8□□□□□ -0.36
MCF2-209ENST00000520602 NECTIN2Q92692 538 aa12.8□□□□□ -0.36
MCF2-209ENST00000520602 RBM33Q96EV2 1170 aaKnown RBP12.8□□□□□ -0.36
MCF2-209ENST00000520602 NSD2O96028 1365 aa12.8□□□□□ -0.36
MCF2-209ENST00000520602 IGHDP01880 384 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms