RNA–Protein interactions for RNA: ENST00000520493.1

SQLE-204, Transcript of squalene epoxidase, humanhuman

TSL 3

Gene SQLE, Length 737 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQLE-204ENST00000520493 KIFC2Q96AC6 838 aa9.63□□□□□ -0.87
SQLE-204ENST00000520493 RCCD1A6NED2 376 aa9.61□□□□□ -0.87
SQLE-204ENST00000520493 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.6□□□□□ -0.87
SQLE-204ENST00000520493 J3QL48 77 aa9.6□□□□□ -0.87
SQLE-204ENST00000520493 GPR37O15354 613 aa9.6□□□□□ -0.87
SQLE-204ENST00000520493 FAM161AQ3B820 660 aa9.6□□□□□ -0.87
SQLE-204ENST00000520493 SNIP1Q8TAD8 396 aaKnown RBP9.6□□□□□ -0.87
SQLE-204ENST00000520493 NXF1Q9UBU9 619 aaKnown RBP9.6□□□□□ -0.87
SQLE-204ENST00000520493 IRF7Q92985 503 aa9.59□□□□□ -0.87
SQLE-204ENST00000520493 ZBTB24O43167 697 aaPredicted RBP9.58□□□□□ -0.88
SQLE-204ENST00000520493 VEGFBP49765 207 aa9.58□□□□□ -0.88
SQLE-204ENST00000520493 PXYLP1Q8TE99 480 aa9.57□□□□□ -0.88
SQLE-204ENST00000520493 HPS1Q92902 700 aa9.57□□□□□ -0.88
SQLE-204ENST00000520493 FECHP22830 423 aa9.56□□□□□ -0.88
SQLE-204ENST00000520493 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.56□□□□□ -0.88
SQLE-204ENST00000520493 METTL3Q86U44 580 aaKnown RBP9.56□□□□□ -0.88
SQLE-204ENST00000520493 KCTD17Q8N5Z5 321 aa9.56□□□□□ -0.88
SQLE-204ENST00000520493 WNT7AO00755 349 aa9.55□□□□□ -0.88
SQLE-204ENST00000520493 RSPH4AQ5TD94 716 aa9.55□□□□□ -0.88
SQLE-204ENST00000520493 MAP2K5Q13163 448 aa9.53□□□□□ -0.88
SQLE-204ENST00000520493 MRGPRX2Q96LB1 330 aa9.53□□□□□ -0.88
SQLE-204ENST00000520493 FAM160A2Q8N612 972 aaPredicted RBP9.52□□□□□ -0.89
SQLE-204ENST00000520493 PRDM9Q9NQV7 894 aa9.51□□□□□ -0.89
SQLE-204ENST00000520493 ERBB4Q15303 1308 aa9.5□□□□□ -0.89
SQLE-204ENST00000520493 MINK1Q8N4C8 1332 aaPredicted RBP9.5□□□□□ -0.89
SQLE-204ENST00000520493 FMNL1O95466 1100 aaPredicted RBP9.48□□□□□ -0.89
SQLE-204ENST00000520493 NPAS3Q8IXF0 933 aa9.48□□□□□ -0.89
SQLE-204ENST00000520493 THAP11Q96EK4 314 aa9.48□□□□□ -0.89
SQLE-204ENST00000520493 DAXXQ9UER7 740 aaPredicted RBP9.48□□□□□ -0.89
SQLE-204ENST00000520493 H3BM21 787 aa9.47□□□□□ -0.89
SQLE-204ENST00000520493 IRF6O14896 467 aa9.47□□□□□ -0.89
SQLE-204ENST00000520493 MORN1Q5T089 497 aa9.47□□□□□ -0.89
SQLE-204ENST00000520493 SULF1Q8IWU6 871 aa9.47□□□□□ -0.89
SQLE-204ENST00000520493 TRIM32Q13049 653 aa9.46□□□□□ -0.9
SQLE-204ENST00000520493 KRI1Q8N9T8 703 aaKnown RBP9.46□□□□□ -0.9
SQLE-204ENST00000520493 RDH13Q8NBN7 331 aa9.45□□□□□ -0.9
SQLE-204ENST00000520493 BMP1P13497 986 aa9.44□□□□□ -0.9
SQLE-204ENST00000520493 KCNMA1Q12791 1236 aa9.44□□□□□ -0.9
SQLE-204ENST00000520493 DDX11L8A8MPP1 907 aa9.43□□□□□ -0.9
SQLE-204ENST00000520493 CCDC102AQ96A19 550 aa9.43□□□□□ -0.9
SQLE-204ENST00000520493 SLC27A5Q9Y2P5 690 aa9.43□□□□□ -0.9
SQLE-204ENST00000520493 FUT2Q10981 343 aa9.42□□□□□ -0.9
SQLE-204ENST00000520493 ZC3H15Q8WU90 426 aaKnown RBP9.42□□□□□ -0.9
SQLE-204ENST00000520493 NLRP7Q8WX94 980 aa9.42□□□□□ -0.9
SQLE-204ENST00000520493 BCANQ96GW7 911 aa9.42□□□□□ -0.9
SQLE-204ENST00000520493 PHOX2BQ99453 314 aa9.42□□□□□ -0.9
SQLE-204ENST00000520493 REPIN1Q9BWE0 567 aaKnown RBP9.42□□□□□ -0.9
SQLE-204ENST00000520493 ZMYND10O75800 440 aa9.4□□□□□ -0.9
SQLE-204ENST00000520493 GSK3AP49840 483 aa9.4□□□□□ -0.9
SQLE-204ENST00000520493 TRIM46Q7Z4K8 759 aa9.4□□□□□ -0.9
SQLE-204ENST00000520493 ALDH1A1P00352 501 aa9.39□□□□□ -0.91
SQLE-204ENST00000520493 ATP6V1AP38606 617 aa9.39□□□□□ -0.91
SQLE-204ENST00000520493 BARGINQ6ZT62 677 aa9.39□□□□□ -0.91
SQLE-204ENST00000520493 TMEM151AQ8N4L1 468 aa9.39□□□□□ -0.91
SQLE-204ENST00000520493 CLCN1P35523 988 aa9.38□□□□□ -0.91
SQLE-204ENST00000520493 MDM2Q00987 491 aaPredicted RBP9.38□□□□□ -0.91
SQLE-204ENST00000520493 RC3H1Q5TC82 1133 aaKnown RBP9.38□□□□□ -0.91
SQLE-204ENST00000520493 BRICD5Q6PL45 260 aa9.38□□□□□ -0.91
SQLE-204ENST00000520493 GDF11O95390 407 aa9.36□□□□□ -0.91
SQLE-204ENST00000520493 MSS51Q4VC12 460 aa9.36□□□□□ -0.91
SQLE-204ENST00000520493 GPCPD1Q9NPB8 672 aa9.36□□□□□ -0.91
SQLE-204ENST00000520493 CAPN5O15484 640 aaPredicted RBP9.35□□□□□ -0.91
SQLE-204ENST00000520493 GRIPAP1Q4V328 841 aa9.35□□□□□ -0.91
SQLE-204ENST00000520493 RNF19BQ6ZMZ0 732 aa9.35□□□□□ -0.91
SQLE-204ENST00000520493 SALL2Q9Y467 1007 aaPredicted RBP9.35□□□□□ -0.91
SQLE-204ENST00000520493 GCGRP47871 477 aa9.34□□□□□ -0.91
SQLE-204ENST00000520493 SKOR1P84550 965 aa9.33□□□□□ -0.92
SQLE-204ENST00000520493 RASSF7Q02833 373 aa9.33□□□□□ -0.92
SQLE-204ENST00000520493 TTLL12Q14166 644 aaPredicted RBP9.33□□□□□ -0.92
SQLE-204ENST00000520493 CD46P15529 392 aa9.31□□□□□ -0.92
SQLE-204ENST00000520493 CCDC24Q8N4L8 307 aa9.31□□□□□ -0.92
SQLE-204ENST00000520493 ZFP42Q96MM3 310 aa9.31□□□□□ -0.92
SQLE-204ENST00000520493 AMHR2Q16671 573 aa9.29□□□□□ -0.92
SQLE-204ENST00000520493 AK7Q96M32 723 aa9.29□□□□□ -0.92
SQLE-204ENST00000520493 FAM217BQ9NTX9 383 aaPredicted RBP9.29□□□□□ -0.92
SQLE-204ENST00000520493 WASF2Q9Y6W5 498 aa9.29□□□□□ -0.92
SQLE-204ENST00000520493 KDM4AO75164 1064 aa9.28□□□□□ -0.92
SQLE-204ENST00000520493 MMP16P51512 607 aa9.28□□□□□ -0.92
SQLE-204ENST00000520493 USP46P62068 366 aa9.28□□□□□ -0.92
SQLE-204ENST00000520493 XP32Q5T750 250 aa9.28□□□□□ -0.92
SQLE-204ENST00000520493 WNT7BP56706 349 aa9.27□□□□□ -0.93
SQLE-204ENST00000520493 SOBPA7XYQ1 873 aa9.26□□□□□ -0.93
SQLE-204ENST00000520493 GPAT2Q6NUI2 795 aa9.26□□□□□ -0.93
SQLE-204ENST00000520493 NUTM1Q86Y26 1132 aa9.26□□□□□ -0.93
SQLE-204ENST00000520493 VSIG8P0DPA2 414 aa9.25□□□□□ -0.93
SQLE-204ENST00000520493 Q3C1V9 767 aa9.25□□□□□ -0.93
SQLE-204ENST00000520493 TRIM66O15016 1216 aa9.24□□□□□ -0.93
SQLE-204ENST00000520493 SSTR3P32745 418 aaPredicted RBP9.24□□□□□ -0.93
SQLE-204ENST00000520493 GIGYF2Q6Y7W6 1299 aaKnown RBP9.23□□□□□ -0.93
SQLE-204ENST00000520493 RNF225M0QZC1 329 aaPredicted RBP9.22□□□□□ -0.93
SQLE-204ENST00000520493 EHBP1Q8NDI1 1231 aa9.22□□□□□ -0.93
SQLE-204ENST00000520493 SIAH2O43255 324 aa9.21□□□□□ -0.94
SQLE-204ENST00000520493 DXOO77932 396 aaKnown RBP9.21□□□□□ -0.94
SQLE-204ENST00000520493 SLC24A3Q9HC58 644 aa9.21□□□□□ -0.94
SQLE-204ENST00000520493 ADAMTS8Q9UP79 889 aa9.21□□□□□ -0.94
SQLE-204ENST00000520493 HOXA2O43364 376 aa9.2□□□□□ -0.94
SQLE-204ENST00000520493 PARP9Q8IXQ6 854 aa9.2□□□□□ -0.94
SQLE-204ENST00000520493 USB1Q9BQ65 265 aaKnown RBP9.2□□□□□ -0.94
SQLE-204ENST00000520493 SCARF1Q14162 830 aa9.19□□□□□ -0.94
SQLE-204ENST00000520493 PURBQ96QR8 312 aaKnown RBP9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms