RNA–Protein interactions for RNA: ENST00000517647.1

TRIM55-205, Transcript of tripartite motif containing 55, humanhuman

TSL 2

Gene TRIM55, Length 865 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-205ENST00000517647 DLC1Q96QB1 1528 aa15.99■□□□□ 0.15
TRIM55-205ENST00000517647 DCAF11Q8TEB1 546 aa15.99■□□□□ 0.15
TRIM55-205ENST00000517647 NALCNQ8IZF0 1738 aa15.99■□□□□ 0.15
TRIM55-205ENST00000517647 CFAP70Q5T0N1 1121 aa15.98■□□□□ 0.15
TRIM55-205ENST00000517647 AHDC1Q5TGY3 1603 aaPredicted RBP15.97■□□□□ 0.15
TRIM55-205ENST00000517647 CDC42BPGQ6DT37 1551 aa15.97■□□□□ 0.15
TRIM55-205ENST00000517647 TMEM132EQ6IEE7 984 aa15.96■□□□□ 0.15
TRIM55-205ENST00000517647 KIAA1210Q9ULL0 1709 aa15.95■□□□□ 0.14
TRIM55-205ENST00000517647 BRINP3Q76B58 766 aa15.95■□□□□ 0.14
TRIM55-205ENST00000517647 C1orf167Q5SNV9 1468 aa15.94■□□□□ 0.14
TRIM55-205ENST00000517647 COL16A1Q07092 1604 aaPredicted RBP15.92■□□□□ 0.14
TRIM55-205ENST00000517647 WAPLQ7Z5K2 1190 aa15.91■□□□□ 0.14
TRIM55-205ENST00000517647 KDM2AQ9Y2K7 1162 aa15.91■□□□□ 0.14
TRIM55-205ENST00000517647 JCADQ9P266 1359 aa15.9■□□□□ 0.14
TRIM55-205ENST00000517647 STK26Q9P289 416 aa15.9■□□□□ 0.14
TRIM55-205ENST00000517647 PHLPP1O60346 1717 aa15.9■□□□□ 0.14
TRIM55-205ENST00000517647 NHSL1Q5SYE7 1610 aa15.9■□□□□ 0.14
TRIM55-205ENST00000517647 PLEKHH1Q9ULM0 1364 aa15.89■□□□□ 0.13
TRIM55-205ENST00000517647 MED1Q15648 1581 aaPredicted RBP15.89■□□□□ 0.13
TRIM55-205ENST00000517647 ADGRB2O60241 1585 aa15.88■□□□□ 0.13
TRIM55-205ENST00000517647 L3MBTL2Q969R5 705 aa15.88■□□□□ 0.13
TRIM55-205ENST00000517647 PRAM1Q96QH2 718 aa15.86■□□□□ 0.13
TRIM55-205ENST00000517647 SOS2Q07890 1332 aaPredicted RBP15.86■□□□□ 0.13
TRIM55-205ENST00000517647 SPATA31A6Q5VVP1 1343 aa15.86■□□□□ 0.13
TRIM55-205ENST00000517647 DISP3Q9P2K9 1392 aa15.86■□□□□ 0.13
TRIM55-205ENST00000517647 FMN2Q9NZ56 1722 aa15.85■□□□□ 0.13
TRIM55-205ENST00000517647 SIN3AQ96ST3 1273 aa15.85■□□□□ 0.13
TRIM55-205ENST00000517647 SHPRHQ149N8 1683 aa15.85■□□□□ 0.13
TRIM55-205ENST00000517647 ANKARQ7Z5J8 1434 aa15.85■□□□□ 0.13
TRIM55-205ENST00000517647 LRRC59Q96AG4 307 aaKnown RBP15.84■□□□□ 0.13
TRIM55-205ENST00000517647 ORAI2Q96SN7 254 aa15.83■□□□□ 0.12
TRIM55-205ENST00000517647 CLSPNQ9HAW4 1339 aa15.83■□□□□ 0.12
TRIM55-205ENST00000517647 EIF3AQ14152 1382 aaKnown RBP15.83■□□□□ 0.12
TRIM55-205ENST00000517647 POGKQ9P215 609 aa15.82■□□□□ 0.12
TRIM55-205ENST00000517647 TRAK1Q9UPV9 953 aa15.82■□□□□ 0.12
TRIM55-205ENST00000517647 NPHP3Q7Z494 1330 aa15.82■□□□□ 0.12
TRIM55-205ENST00000517647 ARHGEF28Q8N1W1 1705 aaKnown RBP15.82■□□□□ 0.12
TRIM55-205ENST00000517647 KIF1AQ12756 1690 aa15.8■□□□□ 0.12
TRIM55-205ENST00000517647 GPRASP1Q5JY77 1395 aa15.8■□□□□ 0.12
TRIM55-205ENST00000517647 NCBP3Q53F19 620 aaKnown RBP15.8■□□□□ 0.12
TRIM55-205ENST00000517647 NBPF1Q3BBV0 1214 aa15.79■□□□□ 0.12
TRIM55-205ENST00000517647 PXDNQ92626 1479 aa15.78■□□□□ 0.12
TRIM55-205ENST00000517647 WASLO00401 505 aaPredicted RBP15.78■□□□□ 0.12
TRIM55-205ENST00000517647 NEUROD1Q13562 356 aa15.78■□□□□ 0.12
TRIM55-205ENST00000517647 ESCO1Q5FWF5 840 aa15.78■□□□□ 0.12
TRIM55-205ENST00000517647 TRPM1Q7Z4N2 1603 aa15.78■□□□□ 0.12
TRIM55-205ENST00000517647 TULP4Q9NRJ4 1543 aa15.78■□□□□ 0.12
TRIM55-205ENST00000517647 PNPLA6Q8IY17 1366 aa15.77■□□□□ 0.12
TRIM55-205ENST00000517647 TIMELESSQ9UNS1 1208 aa15.76■□□□□ 0.11
TRIM55-205ENST00000517647 USP32Q8NFA0 1604 aa15.75■□□□□ 0.11
TRIM55-205ENST00000517647 COL22A1Q8NFW1 1626 aaPredicted RBP15.75■□□□□ 0.11
TRIM55-205ENST00000517647 TONSLQ96HA7 1378 aa15.75■□□□□ 0.11
TRIM55-205ENST00000517647 FOXO3O43524 673 aa15.74■□□□□ 0.11
TRIM55-205ENST00000517647 DDX17Q92841 729 aaKnown RBP15.74■□□□□ 0.11
TRIM55-205ENST00000517647 PHF8Q9UPP1 1060 aa15.74■□□□□ 0.11
TRIM55-205ENST00000517647 LRP6O75581 1613 aa15.73■□□□□ 0.11
TRIM55-205ENST00000517647 SAFB2Q14151 953 aaKnown RBP eCLIP15.73■□□□□ 0.11
TRIM55-205ENST00000517647 RGS17Q9UGC6 210 aaPredicted RBP15.73■□□□□ 0.11
TRIM55-205ENST00000517647 SBNO1A3KN83 1393 aa15.73■□□□□ 0.11
TRIM55-205ENST00000517647 MINK1Q8N4C8 1332 aaPredicted RBP15.72■□□□□ 0.11
TRIM55-205ENST00000517647 CENPJQ9HC77 1338 aaPredicted RBP15.72■□□□□ 0.11
TRIM55-205ENST00000517647 NBPF8Q3BBV2 869 aa15.72■□□□□ 0.11
TRIM55-205ENST00000517647 ROCK2O75116 1388 aaKnown RBP15.72■□□□□ 0.11
TRIM55-205ENST00000517647 SBNO2Q9Y2G9 1366 aa15.72■□□□□ 0.11
TRIM55-205ENST00000517647 ATP7BP35670 1465 aa15.71■□□□□ 0.11
TRIM55-205ENST00000517647 RALGAPBQ86X10 1494 aa15.71■□□□□ 0.11
TRIM55-205ENST00000517647 PRR36Q9H6K5 1346 aa15.71■□□□□ 0.11
TRIM55-205ENST00000517647 ILDR2Q71H61 639 aa15.71■□□□□ 0.11
TRIM55-205ENST00000517647 RGPD8O14715 1765 aaPredicted RBP15.71■□□□□ 0.11
TRIM55-205ENST00000517647 SPATA31A3Q5VYP0 1347 aa15.7■□□□□ 0.1
TRIM55-205ENST00000517647 NUTM2FA1L443 756 aa15.7■□□□□ 0.1
TRIM55-205ENST00000517647 PSME1Q06323 249 aa15.7■□□□□ 0.1
TRIM55-205ENST00000517647 HIRIP3Q9BW71 556 aaPredicted RBP15.69■□□□□ 0.1
TRIM55-205ENST00000517647 PLEKHG3A1L390 1219 aa15.68■□□□□ 0.1
TRIM55-205ENST00000517647 KRT28Q7Z3Y7 464 aa15.68■□□□□ 0.1
TRIM55-205ENST00000517647 CDK19Q9BWU1 502 aa15.68■□□□□ 0.1
TRIM55-205ENST00000517647 CCDC61Q9Y6R9 512 aa15.68■□□□□ 0.1
TRIM55-205ENST00000517647 ITSN1Q15811 1721 aa15.68■□□□□ 0.1
TRIM55-205ENST00000517647 POLR3AO14802 1390 aaPredicted RBP15.67■□□□□ 0.1
TRIM55-205ENST00000517647 NUDT16Q96DE0 195 aaKnown RBP15.67■□□□□ 0.1
TRIM55-205ENST00000517647 TNS3Q68CZ2 1445 aa15.67■□□□□ 0.1
TRIM55-205ENST00000517647 TOPAZ1Q8N9V7 1692 aa15.67■□□□□ 0.1
TRIM55-205ENST00000517647 ARHGEF10O15013 1369 aa15.66■□□□□ 0.1
TRIM55-205ENST00000517647 ZNF772Q68DY9 489 aaPredicted RBP15.66■□□□□ 0.1
TRIM55-205ENST00000517647 BRD4O60885 1362 aaPredicted RBP15.65■□□□□ 0.1
TRIM55-205ENST00000517647 QRICH2Q9H0J4 1663 aa15.65■□□□□ 0.1
TRIM55-205ENST00000517647 SLC24A1O60721 1099 aa15.64■□□□□ 0.09
TRIM55-205ENST00000517647 PUS7Q96PZ0 661 aaKnown RBP15.64■□□□□ 0.09
TRIM55-205ENST00000517647 TRPM3Q9HCF6 1732 aaPredicted RBP15.64■□□□□ 0.09
TRIM55-205ENST00000517647 EVC2Q86UK5 1308 aa15.64■□□□□ 0.09
TRIM55-205ENST00000517647 SOCS7O14512 581 aa15.63■□□□□ 0.09
TRIM55-205ENST00000517647 FNBP4Q8N3X1 1017 aaPredicted RBP15.63■□□□□ 0.09
TRIM55-205ENST00000517647 PMFBP1Q8TBY8 1022 aa15.63■□□□□ 0.09
TRIM55-205ENST00000517647 CARD11Q9BXL7 1154 aa15.63■□□□□ 0.09
TRIM55-205ENST00000517647 MEX3CQ5U5Q3 659 aaKnown RBP15.62■□□□□ 0.09
TRIM55-205ENST00000517647 POTEAQ6S8J7 498 aa15.62■□□□□ 0.09
TRIM55-205ENST00000517647 ALS2Q96Q42 1657 aa15.61■□□□□ 0.09
TRIM55-205ENST00000517647 NUTM2BA6NNL0 878 aaPredicted RBP15.61■□□□□ 0.09
TRIM55-205ENST00000517647 NUTM2EB1AL46 878 aaPredicted RBP15.61■□□□□ 0.09
TRIM55-205ENST00000517647 XPCQ01831 940 aaPredicted RBP15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms