RNA–Protein interactions for RNA: ENST00000515620.5

CLDND1-231, Transcript of claudin domain containing 1, humanhuman

TSL 3

Gene CLDND1, Length 663 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-231ENST00000515620 GJD4Q96KN9 370 aaPredicted RBP16.17■□□□□ 0.18
CLDND1-231ENST00000515620 MARF1Q9Y4F3 1742 aaKnown RBP16.16■□□□□ 0.18
CLDND1-231ENST00000515620 PXDNQ92626 1479 aa16.16■□□□□ 0.18
CLDND1-231ENST00000515620 NPHP3Q7Z494 1330 aa16.15■□□□□ 0.18
CLDND1-231ENST00000515620 GLI3P10071 1580 aa16.14■□□□□ 0.17
CLDND1-231ENST00000515620 XPCQ01831 940 aaPredicted RBP16.14■□□□□ 0.17
CLDND1-231ENST00000515620 DEFB132Q7Z7B7 95 aa16.14■□□□□ 0.17
CLDND1-231ENST00000515620 LRP5O75197 1615 aa16.14■□□□□ 0.17
CLDND1-231ENST00000515620 RALGAPBQ86X10 1494 aa16.14■□□□□ 0.17
CLDND1-231ENST00000515620 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.14■□□□□ 0.17
CLDND1-231ENST00000515620 PRAG1Q86YV5 1406 aa16.13■□□□□ 0.17
CLDND1-231ENST00000515620 ESCO1Q5FWF5 840 aa16.13■□□□□ 0.17
CLDND1-231ENST00000515620 HFM1A2PYH4 1435 aa16.12■□□□□ 0.17
CLDND1-231ENST00000515620 ITGAEP38570 1179 aa16.12■□□□□ 0.17
CLDND1-231ENST00000515620 CDC42BPGQ6DT37 1551 aa16.12■□□□□ 0.17
CLDND1-231ENST00000515620 FOXO3O43524 673 aa16.1■□□□□ 0.17
CLDND1-231ENST00000515620 SF3B2Q13435 895 aaKnown RBP16.1■□□□□ 0.17
CLDND1-231ENST00000515620 UNC5CLQ8IV45 518 aa16.1■□□□□ 0.17
CLDND1-231ENST00000515620 KIF1BO60333 1816 aa16.1■□□□□ 0.17
CLDND1-231ENST00000515620 SLIT2O94813 1529 aa16.09■□□□□ 0.17
CLDND1-231ENST00000515620 BRWD3Q6RI45 1802 aa16.08■□□□□ 0.17
CLDND1-231ENST00000515620 VGFO15240 615 aaPredicted RBP16.07■□□□□ 0.16
CLDND1-231ENST00000515620 USP32Q8NFA0 1604 aa16.07■□□□□ 0.16
CLDND1-231ENST00000515620 LRPPRCP42704 1394 aaKnown RBP16.06■□□□□ 0.16
CLDND1-231ENST00000515620 SEPT12Q8IYM1 358 aa16.06■□□□□ 0.16
CLDND1-231ENST00000515620 NAIPQ13075 1403 aa16.05■□□□□ 0.16
CLDND1-231ENST00000515620 NUTM2FA1L443 756 aa16.05■□□□□ 0.16
CLDND1-231ENST00000515620 PSDA5PKW4 1024 aaPredicted RBP16.05■□□□□ 0.16
CLDND1-231ENST00000515620 SPATA31A3Q5VYP0 1347 aa16.02■□□□□ 0.16
CLDND1-231ENST00000515620 ADRA2BP18089 450 aa16.02■□□□□ 0.16
CLDND1-231ENST00000515620 CCDC9Q9Y3X0 531 aaKnown RBP16.02■□□□□ 0.16
CLDND1-231ENST00000515620 HRCP23327 699 aa16.01■□□□□ 0.15
CLDND1-231ENST00000515620 HAP1P54257 671 aaPredicted RBP16.01■□□□□ 0.15
CLDND1-231ENST00000515620 PLCH1Q4KWH8 1693 aa16.01■□□□□ 0.15
CLDND1-231ENST00000515620 CCDC144AA2RUR9 1427 aa16.01■□□□□ 0.15
CLDND1-231ENST00000515620 PPLO60437 1756 aa16■□□□□ 0.15
CLDND1-231ENST00000515620 KIF1AQ12756 1690 aa16■□□□□ 0.15
CLDND1-231ENST00000515620 VPS72Q15906 364 aa16■□□□□ 0.15
CLDND1-231ENST00000515620 KRT27Q7Z3Y8 459 aa16■□□□□ 0.15
CLDND1-231ENST00000515620 RPGRIP1LQ68CZ1 1315 aa15.99■□□□□ 0.15
CLDND1-231ENST00000515620 PLEKHG5O94827 1062 aa15.99■□□□□ 0.15
CLDND1-231ENST00000515620 BAG6P46379 1132 aa15.99■□□□□ 0.15
CLDND1-231ENST00000515620 A0A0G2JS52 829 aa15.98■□□□□ 0.15
CLDND1-231ENST00000515620 MYT1Q01538 1121 aa15.98■□□□□ 0.15
CLDND1-231ENST00000515620 WAPLQ7Z5K2 1190 aa15.98■□□□□ 0.15
CLDND1-231ENST00000515620 FMN2Q9NZ56 1722 aa15.98■□□□□ 0.15
CLDND1-231ENST00000515620 STK26Q9P289 416 aa15.98■□□□□ 0.15
CLDND1-231ENST00000515620 NWD2Q9ULI1 1742 aa15.97■□□□□ 0.15
CLDND1-231ENST00000515620 TNS3Q68CZ2 1445 aa15.97■□□□□ 0.15
CLDND1-231ENST00000515620 CABLES1Q8TDN4 633 aa15.97■□□□□ 0.15
CLDND1-231ENST00000515620 TECPR2O15040 1411 aa15.96■□□□□ 0.15
CLDND1-231ENST00000515620 KRT28Q7Z3Y7 464 aa15.96■□□□□ 0.15
CLDND1-231ENST00000515620 PLEKHH1Q9ULM0 1364 aa15.96■□□□□ 0.15
CLDND1-231ENST00000515620 ABCA3Q99758 1704 aa15.96■□□□□ 0.15
CLDND1-231ENST00000515620 ONECUT3O60422 494 aaPredicted RBP15.95■□□□□ 0.14
CLDND1-231ENST00000515620 EN1Q05925 392 aaPredicted RBP15.93■□□□□ 0.14
CLDND1-231ENST00000515620 R3HDM1Q15032 1099 aaKnown RBP15.93■□□□□ 0.14
CLDND1-231ENST00000515620 KNDC1Q76NI1 1749 aa15.93■□□□□ 0.14
CLDND1-231ENST00000515620 RRBP1Q9P2E9 1410 aaKnown RBP15.93■□□□□ 0.14
CLDND1-231ENST00000515620 ADGRF5Q8IZF2 1346 aa15.93■□□□□ 0.14
CLDND1-231ENST00000515620 FAM98CQ17RN3 349 aaKnown RBP15.92■□□□□ 0.14
CLDND1-231ENST00000515620 LMOD2Q6P5Q4 547 aa15.92■□□□□ 0.14
CLDND1-231ENST00000515620 RGPD1P0DJD0 1748 aa15.91■□□□□ 0.14
CLDND1-231ENST00000515620 NRAPQ86VF7 1730 aa15.91■□□□□ 0.14
CLDND1-231ENST00000515620 IFT172Q9UG01 1749 aa15.91■□□□□ 0.14
CLDND1-231ENST00000515620 ABCC11Q96J66 1382 aa15.9■□□□□ 0.14
CLDND1-231ENST00000515620 PSME1Q06323 249 aa15.9■□□□□ 0.14
CLDND1-231ENST00000515620 TMEM132EQ6IEE7 984 aa15.9■□□□□ 0.14
CLDND1-231ENST00000515620 PHF8Q9UPP1 1060 aa15.9■□□□□ 0.14
CLDND1-231ENST00000515620 ARHGEF10O15013 1369 aa15.89■□□□□ 0.13
CLDND1-231ENST00000515620 FAM182BQ5T319 152 aa15.89■□□□□ 0.13
CLDND1-231ENST00000515620 PIAS4Q8N2W9 510 aaPredicted RBP15.89■□□□□ 0.13
CLDND1-231ENST00000515620 SBNO1A3KN83 1393 aa15.88■□□□□ 0.13
CLDND1-231ENST00000515620 FAM83GA6ND36 823 aa15.88■□□□□ 0.13
CLDND1-231ENST00000515620 PPARGC1BQ86YN6 1023 aaKnown RBP15.88■□□□□ 0.13
CLDND1-231ENST00000515620 SLC4A1APQ9BWU0 796 aaKnown RBP15.88■□□□□ 0.13
CLDND1-231ENST00000515620 NRXN1Q9ULB1 1477 aa15.88■□□□□ 0.13
CLDND1-231ENST00000515620 TNS1Q9HBL0 1735 aaKnown RBP15.88■□□□□ 0.13
CLDND1-231ENST00000515620 RGPD8O14715 1765 aaPredicted RBP15.87■□□□□ 0.13
CLDND1-231ENST00000515620 DISP2A7MBM2 1401 aa15.87■□□□□ 0.13
CLDND1-231ENST00000515620 YTHDC2Q9H6S0 1430 aaKnown RBP15.87■□□□□ 0.13
CLDND1-231ENST00000515620 BTG4Q9NY30 223 aa15.86■□□□□ 0.13
CLDND1-231ENST00000515620 PIK3C2GO75747 1445 aa15.85■□□□□ 0.13
CLDND1-231ENST00000515620 ADGRB2O60241 1585 aa15.85■□□□□ 0.13
CLDND1-231ENST00000515620 YY1P25490 414 aa15.85■□□□□ 0.13
CLDND1-231ENST00000515620 RGL3Q3MIN7 710 aa15.85■□□□□ 0.13
CLDND1-231ENST00000515620 ANKRD30BQ9BXX2 1392 aa15.85■□□□□ 0.13
CLDND1-231ENST00000515620 EZH2Q15910 746 aaKnown RBP15.84■□□□□ 0.13
CLDND1-231ENST00000515620 THSD7AQ9UPZ6 1657 aa15.83■□□□□ 0.13
CLDND1-231ENST00000515620 COL14A1Q05707 1796 aaKnown RBP15.83■□□□□ 0.12
CLDND1-231ENST00000515620 SPATA31E1Q6ZUB1 1445 aa15.83■□□□□ 0.12
CLDND1-231ENST00000515620 SPATA31A5Q5VU36 1347 aa15.82■□□□□ 0.12
CLDND1-231ENST00000515620 SPATA31A7Q8IWB4 1347 aa15.82■□□□□ 0.12
CLDND1-231ENST00000515620 SAFB2Q14151 953 aaKnown RBP eCLIP15.81■□□□□ 0.12
CLDND1-231ENST00000515620 PMFBP1Q8TBY8 1022 aa15.81■□□□□ 0.12
CLDND1-231ENST00000515620 TRPM3Q9HCF6 1732 aaPredicted RBP15.8■□□□□ 0.12
CLDND1-231ENST00000515620 TRIM37O94972 964 aa15.79■□□□□ 0.12
CLDND1-231ENST00000515620 CAMKK2Q96RR4 588 aa15.79■□□□□ 0.12
CLDND1-231ENST00000515620 ALS2Q96Q42 1657 aa15.79■□□□□ 0.12
CLDND1-231ENST00000515620 ANKARQ7Z5J8 1434 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms