RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 TMEM132EQ6IEE7 984 aa25.74■■□□□ 1.71
DDX41-217ENST00000515562 PNPLA6Q8IY17 1366 aa25.73■■□□□ 1.71
DDX41-217ENST00000515562 DDX17Q92841 729 aaKnown RBP25.73■■□□□ 1.71
DDX41-217ENST00000515562 ORAI2Q96SN7 254 aa25.72■■□□□ 1.71
DDX41-217ENST00000515562 C14orf93Q9H972 538 aaKnown RBP25.72■■□□□ 1.71
DDX41-217ENST00000515562 ZNF772Q68DY9 489 aaPredicted RBP25.71■■□□□ 1.71
DDX41-217ENST00000515562 NUTM2BA6NNL0 878 aaPredicted RBP25.7■■□□□ 1.7
DDX41-217ENST00000515562 NUTM2EB1AL46 878 aaPredicted RBP25.7■■□□□ 1.7
DDX41-217ENST00000515562 WAPLQ7Z5K2 1190 aa25.7■■□□□ 1.7
DDX41-217ENST00000515562 NUTM2AQ8IVF1 878 aaPredicted RBP25.7■■□□□ 1.7
DDX41-217ENST00000515562 SOS2Q07890 1332 aaPredicted RBP25.69■■□□□ 1.7
DDX41-217ENST00000515562 DHX57Q6P158 1386 aaKnown RBP25.69■■□□□ 1.7
DDX41-217ENST00000515562 PLEKHH1Q9ULM0 1364 aa25.69■■□□□ 1.7
DDX41-217ENST00000515562 SIRT1Q96EB6 747 aa25.67■■□□□ 1.7
DDX41-217ENST00000515562 FMN2Q9NZ56 1722 aa25.67■■□□□ 1.7
DDX41-217ENST00000515562 CFAP70Q5T0N1 1121 aa25.66■■□□□ 1.7
DDX41-217ENST00000515562 NPHP3Q7Z494 1330 aa25.65■■□□□ 1.7
DDX41-217ENST00000515562 ESCO1Q5FWF5 840 aa25.65■■□□□ 1.7
DDX41-217ENST00000515562 DLC1Q96QB1 1528 aa25.63■■□□□ 1.69
DDX41-217ENST00000515562 KIF1AQ12756 1690 aa25.63■■□□□ 1.69
DDX41-217ENST00000515562 COL22A1Q8NFW1 1626 aaPredicted RBP25.63■■□□□ 1.69
DDX41-217ENST00000515562 ADGRB1O14514 1584 aa25.62■■□□□ 1.69
DDX41-217ENST00000515562 PXDNQ92626 1479 aa25.62■■□□□ 1.69
DDX41-217ENST00000515562 STAC3Q96MF2 364 aa25.61■■□□□ 1.69
DDX41-217ENST00000515562 AFF2P51816 1311 aa25.6■■□□□ 1.69
DDX41-217ENST00000515562 DCAF11Q8TEB1 546 aa25.58■■□□□ 1.69
DDX41-217ENST00000515562 C8orf37Q96NL8 207 aa25.58■■□□□ 1.69
DDX41-217ENST00000515562 NUTM2FA1L443 756 aa25.57■■□□□ 1.68
DDX41-217ENST00000515562 PRAM1Q96QH2 718 aa25.56■■□□□ 1.68
DDX41-217ENST00000515562 ADGRB2O60241 1585 aa25.56■■□□□ 1.68
DDX41-217ENST00000515562 CDK12Q9NYV4 1490 aaPredicted RBP25.55■■□□□ 1.68
DDX41-217ENST00000515562 FOXO3O43524 673 aa25.55■■□□□ 1.68
DDX41-217ENST00000515562 KDM2AQ9Y2K7 1162 aa25.54■■□□□ 1.68
DDX41-217ENST00000515562 RXRBP28702 533 aa25.53■■□□□ 1.68
DDX41-217ENST00000515562 ADAMTS2O95450 1211 aa25.52■■□□□ 1.68
DDX41-217ENST00000515562 POGKQ9P215 609 aa25.52■■□□□ 1.68
DDX41-217ENST00000515562 SAFB2Q14151 953 aaKnown RBP eCLIP25.51■■□□□ 1.67
DDX41-217ENST00000515562 RGPD8O14715 1765 aaPredicted RBP25.5■■□□□ 1.67
DDX41-217ENST00000515562 XPCQ01831 940 aaPredicted RBP25.5■■□□□ 1.67
DDX41-217ENST00000515562 ANKARQ7Z5J8 1434 aa25.5■■□□□ 1.67
DDX41-217ENST00000515562 NGLY1Q96IV0 654 aa25.5■■□□□ 1.67
DDX41-217ENST00000515562 TRAK1Q9UPV9 953 aa25.48■■□□□ 1.67
DDX41-217ENST00000515562 MARF1Q9Y4F3 1742 aaKnown RBP25.47■■□□□ 1.67
DDX41-217ENST00000515562 EIF3AQ14152 1382 aaKnown RBP25.46■■□□□ 1.67
DDX41-217ENST00000515562 USP32Q8NFA0 1604 aa25.46■■□□□ 1.67
DDX41-217ENST00000515562 PHF8Q9UPP1 1060 aa25.46■■□□□ 1.67
DDX41-217ENST00000515562 QTRT2Q9H974 415 aaKnown RBP25.45■■□□□ 1.66
DDX41-217ENST00000515562 ARHGEF28Q8N1W1 1705 aaKnown RBP25.45■■□□□ 1.66
DDX41-217ENST00000515562 SPATA31A3Q5VYP0 1347 aa25.44■■□□□ 1.66
DDX41-217ENST00000515562 KIAA1210Q9ULL0 1709 aa25.44■■□□□ 1.66
DDX41-217ENST00000515562 RBM6P78332 1123 aaKnown RBP25.44■■□□□ 1.66
DDX41-217ENST00000515562 TNS3Q68CZ2 1445 aa25.43■■□□□ 1.66
DDX41-217ENST00000515562 TULP4Q9NRJ4 1543 aa25.42■■□□□ 1.66
DDX41-217ENST00000515562 KRT28Q7Z3Y7 464 aa25.42■■□□□ 1.66
DDX41-217ENST00000515562 FNBP4Q8N3X1 1017 aaPredicted RBP25.42■■□□□ 1.66
DDX41-217ENST00000515562 USP21Q9UK80 565 aa25.42■■□□□ 1.66
DDX41-217ENST00000515562 RGS12O14924 1447 aa25.41■■□□□ 1.66
DDX41-217ENST00000515562 PSME1Q06323 249 aa25.41■■□□□ 1.66
DDX41-217ENST00000515562 SBNO1A3KN83 1393 aa25.4■■□□□ 1.66
DDX41-217ENST00000515562 MINK1Q8N4C8 1332 aaPredicted RBP25.39■■□□□ 1.66
DDX41-217ENST00000515562 HIRIP3Q9BW71 556 aaPredicted RBP25.39■■□□□ 1.66
DDX41-217ENST00000515562 TRPC5Q9UL62 973 aaPredicted RBP25.39■■□□□ 1.66
DDX41-217ENST00000515562 ARHGEF10O15013 1369 aa25.37■■□□□ 1.65
DDX41-217ENST00000515562 ATRNO75882 1429 aa25.37■■□□□ 1.65
DDX41-217ENST00000515562 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.36■■□□□ 1.65
DDX41-217ENST00000515562 WASLO00401 505 aaPredicted RBP25.35■■□□□ 1.65
DDX41-217ENST00000515562 ITSN1Q15811 1721 aa25.34■■□□□ 1.65
DDX41-217ENST00000515562 BCL9LQ86UU0 1499 aa25.34■■□□□ 1.65
DDX41-217ENST00000515562 ABCA3Q99758 1704 aa25.34■■□□□ 1.65
DDX41-217ENST00000515562 PMFBP1Q8TBY8 1022 aa25.33■■□□□ 1.65
DDX41-217ENST00000515562 TRPM3Q9HCF6 1732 aaPredicted RBP25.33■■□□□ 1.65
DDX41-217ENST00000515562 UPF1Q92900 1129 aaKnown RBP eCLIP25.32■■□□□ 1.64
DDX41-217ENST00000515562 PRR36Q9H6K5 1346 aa25.32■■□□□ 1.64
DDX41-217ENST00000515562 GPRASP1Q5JY77 1395 aa25.31■■□□□ 1.64
DDX41-217ENST00000515562 ATP7BP35670 1465 aa25.3■■□□□ 1.64
DDX41-217ENST00000515562 HAP1P54257 671 aaPredicted RBP25.3■■□□□ 1.64
DDX41-217ENST00000515562 SLIT2O94813 1529 aa25.3■■□□□ 1.64
DDX41-217ENST00000515562 ALS2Q96Q42 1657 aa25.29■■□□□ 1.64
DDX41-217ENST00000515562 LMOD2Q6P5Q4 547 aa25.28■■□□□ 1.64
DDX41-217ENST00000515562 PLCH1Q4KWH8 1693 aa25.26■■□□□ 1.63
DDX41-217ENST00000515562 NWD2Q9ULI1 1742 aa25.26■■□□□ 1.63
DDX41-217ENST00000515562 TOPAZ1Q8N9V7 1692 aa25.25■■□□□ 1.63
DDX41-217ENST00000515562 ATAD2Q6PL18 1390 aa25.24■■□□□ 1.63
DDX41-217ENST00000515562 UNC5CLQ8IV45 518 aa25.24■■□□□ 1.63
DDX41-217ENST00000515562 NGDNQ8NEJ9 315 aaKnown RBP25.24■■□□□ 1.63
DDX41-217ENST00000515562 NBPF1Q3BBV0 1214 aa25.23■■□□□ 1.63
DDX41-217ENST00000515562 CABLES1Q8TDN4 633 aa25.23■■□□□ 1.63
DDX41-217ENST00000515562 GJD4Q96KN9 370 aaPredicted RBP25.23■■□□□ 1.63
DDX41-217ENST00000515562 NUDT16Q96DE0 195 aaKnown RBP25.22■■□□□ 1.63
DDX41-217ENST00000515562 PLEKHG5O94827 1062 aa25.2■■□□□ 1.62
DDX41-217ENST00000515562 L3MBTL2Q969R5 705 aa25.2■■□□□ 1.62
DDX41-217ENST00000515562 CDK19Q9BWU1 502 aa25.2■■□□□ 1.62
DDX41-217ENST00000515562 RALGAPBQ86X10 1494 aa25.2■■□□□ 1.62
DDX41-217ENST00000515562 GLI3P10071 1580 aa25.19■■□□□ 1.62
DDX41-217ENST00000515562 CENPJQ9HC77 1338 aaPredicted RBP25.18■■□□□ 1.62
DDX41-217ENST00000515562 CRYBG1Q9Y4K1 1723 aa25.18■■□□□ 1.62
DDX41-217ENST00000515562 QRICH2Q9H0J4 1663 aa25.18■■□□□ 1.62
DDX41-217ENST00000515562 TRPM1Q7Z4N2 1603 aa25.18■■□□□ 1.62
DDX41-217ENST00000515562 POLR3AO14802 1390 aaPredicted RBP25.17■■□□□ 1.62
DDX41-217ENST00000515562 PAK3O75914 559 aaPredicted RBP25.16■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms