RNA–Protein interactions for RNA: ENST00000514660.1

NEDD9-215, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 473 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-215ENST00000514660 LOC105371045A0A1W2PR82 267 aa16.56■□□□□ 0.24
NEDD9-215ENST00000514660 HRCP23327 699 aa16.56■□□□□ 0.24
NEDD9-215ENST00000514660 PXDNQ92626 1479 aa16.55■□□□□ 0.24
NEDD9-215ENST00000514660 SLIT2O94813 1529 aa16.55■□□□□ 0.24
NEDD9-215ENST00000514660 XPCQ01831 940 aaPredicted RBP16.54■□□□□ 0.24
NEDD9-215ENST00000514660 NEXMIFQ5QGS0 1516 aa16.54■□□□□ 0.24
NEDD9-215ENST00000514660 SPHKAPQ2M3C7 1700 aa16.53■□□□□ 0.24
NEDD9-215ENST00000514660 UNC5CLQ8IV45 518 aa16.5■□□□□ 0.23
NEDD9-215ENST00000514660 SEPT12Q8IYM1 358 aa16.5■□□□□ 0.23
NEDD9-215ENST00000514660 FAM50AQ14320 339 aaKnown RBP16.48■□□□□ 0.23
NEDD9-215ENST00000514660 FOXO3O43524 673 aa16.47■□□□□ 0.23
NEDD9-215ENST00000514660 ZNF326Q5BKZ1 582 aaKnown RBP16.47■□□□□ 0.23
NEDD9-215ENST00000514660 CLTCL1P53675 1640 aa16.46■□□□□ 0.23
NEDD9-215ENST00000514660 NUP155O75694 1391 aa16.46■□□□□ 0.23
NEDD9-215ENST00000514660 PRAG1Q86YV5 1406 aa16.45■□□□□ 0.22
NEDD9-215ENST00000514660 ONECUT3O60422 494 aaPredicted RBP16.45■□□□□ 0.22
NEDD9-215ENST00000514660 ESCO1Q5FWF5 840 aa16.45■□□□□ 0.22
NEDD9-215ENST00000514660 USP32Q8NFA0 1604 aa16.45■□□□□ 0.22
NEDD9-215ENST00000514660 NPHP3Q7Z494 1330 aa16.45■□□□□ 0.22
NEDD9-215ENST00000514660 SF3B2Q13435 895 aaKnown RBP16.43■□□□□ 0.22
NEDD9-215ENST00000514660 PLCH1Q4KWH8 1693 aa16.43■□□□□ 0.22
NEDD9-215ENST00000514660 EN1Q05925 392 aaPredicted RBP16.42■□□□□ 0.22
NEDD9-215ENST00000514660 R3HDM1Q15032 1099 aaKnown RBP16.42■□□□□ 0.22
NEDD9-215ENST00000514660 CDC42BPGQ6DT37 1551 aa16.42■□□□□ 0.22
NEDD9-215ENST00000514660 NUTM2FA1L443 756 aa16.41■□□□□ 0.22
NEDD9-215ENST00000514660 KRT27Q7Z3Y8 459 aa16.41■□□□□ 0.22
NEDD9-215ENST00000514660 SPATA31A3Q5VYP0 1347 aa16.41■□□□□ 0.22
NEDD9-215ENST00000514660 VPS72Q15906 364 aa16.4■□□□□ 0.22
NEDD9-215ENST00000514660 CABLES1Q8TDN4 633 aa16.4■□□□□ 0.22
NEDD9-215ENST00000514660 FAM182BQ5T319 152 aa16.39■□□□□ 0.21
NEDD9-215ENST00000514660 HFM1A2PYH4 1435 aa16.38■□□□□ 0.21
NEDD9-215ENST00000514660 YY1P25490 414 aa16.38■□□□□ 0.21
NEDD9-215ENST00000514660 ABCA3Q99758 1704 aa16.37■□□□□ 0.21
NEDD9-215ENST00000514660 TNS1Q9HBL0 1735 aaKnown RBP16.37■□□□□ 0.21
NEDD9-215ENST00000514660 NWD2Q9ULI1 1742 aa16.37■□□□□ 0.21
NEDD9-215ENST00000514660 BAG6P46379 1132 aa16.37■□□□□ 0.21
NEDD9-215ENST00000514660 ROCK1Q13464 1354 aa16.37■□□□□ 0.21
NEDD9-215ENST00000514660 NAIPQ13075 1403 aa16.36■□□□□ 0.21
NEDD9-215ENST00000514660 KIF1BO60333 1816 aa16.35■□□□□ 0.21
NEDD9-215ENST00000514660 NRAPQ86VF7 1730 aa16.35■□□□□ 0.21
NEDD9-215ENST00000514660 RGPD1P0DJD0 1748 aa16.34■□□□□ 0.21
NEDD9-215ENST00000514660 RGPD8O14715 1765 aaPredicted RBP16.34■□□□□ 0.21
NEDD9-215ENST00000514660 PLEKHG5O94827 1062 aa16.34■□□□□ 0.21
NEDD9-215ENST00000514660 APLP2Q06481 763 aa16.34■□□□□ 0.21
NEDD9-215ENST00000514660 WAPLQ7Z5K2 1190 aa16.34■□□□□ 0.21
NEDD9-215ENST00000514660 PLEKHH1Q9ULM0 1364 aa16.34■□□□□ 0.21
NEDD9-215ENST00000514660 EZH2Q15910 746 aaKnown RBP16.33■□□□□ 0.2
NEDD9-215ENST00000514660 FMN2Q9NZ56 1722 aa16.33■□□□□ 0.2
NEDD9-215ENST00000514660 FAM83GA6ND36 823 aa16.32■□□□□ 0.2
NEDD9-215ENST00000514660 CCDC9Q9Y3X0 531 aaKnown RBP16.32■□□□□ 0.2
NEDD9-215ENST00000514660 PPLO60437 1756 aa16.31■□□□□ 0.2
NEDD9-215ENST00000514660 DISP2A7MBM2 1401 aa16.31■□□□□ 0.2
NEDD9-215ENST00000514660 FAM98CQ17RN3 349 aaKnown RBP16.31■□□□□ 0.2
NEDD9-215ENST00000514660 KRT28Q7Z3Y7 464 aa16.31■□□□□ 0.2
NEDD9-215ENST00000514660 LRPPRCP42704 1394 aaKnown RBP16.29■□□□□ 0.2
NEDD9-215ENST00000514660 CAMKK2Q96RR4 588 aa16.29■□□□□ 0.2
NEDD9-215ENST00000514660 TNS3Q68CZ2 1445 aa16.28■□□□□ 0.2
NEDD9-215ENST00000514660 KIF1AQ12756 1690 aa16.28■□□□□ 0.2
NEDD9-215ENST00000514660 VGFO15240 615 aaPredicted RBP16.28■□□□□ 0.2
NEDD9-215ENST00000514660 CCDC144AA2RUR9 1427 aa16.28■□□□□ 0.2
NEDD9-215ENST00000514660 THSD7AQ9UPZ6 1657 aa16.27■□□□□ 0.2
NEDD9-215ENST00000514660 CAMTA1Q9Y6Y1 1673 aa16.27■□□□□ 0.2
NEDD9-215ENST00000514660 TECPR2O15040 1411 aa16.27■□□□□ 0.19
NEDD9-215ENST00000514660 A0A0G2JS52 829 aa16.26■□□□□ 0.19
NEDD9-215ENST00000514660 MYT1Q01538 1121 aa16.26■□□□□ 0.19
NEDD9-215ENST00000514660 STK26Q9P289 416 aa16.26■□□□□ 0.19
NEDD9-215ENST00000514660 RREB1Q92766 1687 aa16.24■□□□□ 0.19
NEDD9-215ENST00000514660 ADGRF5Q8IZF2 1346 aa16.24■□□□□ 0.19
NEDD9-215ENST00000514660 ITGAEP38570 1179 aa16.24■□□□□ 0.19
NEDD9-215ENST00000514660 NUP188Q5SRE5 1749 aa16.24■□□□□ 0.19
NEDD9-215ENST00000514660 KNDC1Q76NI1 1749 aa16.22■□□□□ 0.19
NEDD9-215ENST00000514660 IFT172Q9UG01 1749 aa16.22■□□□□ 0.19
NEDD9-215ENST00000514660 TRIM37O94972 964 aa16.22■□□□□ 0.19
NEDD9-215ENST00000514660 HAP1P54257 671 aaPredicted RBP16.22■□□□□ 0.19
NEDD9-215ENST00000514660 TMEM132EQ6IEE7 984 aa16.22■□□□□ 0.19
NEDD9-215ENST00000514660 BTG4Q9NY30 223 aa16.22■□□□□ 0.19
NEDD9-215ENST00000514660 SPATA31A5Q5VU36 1347 aa16.21■□□□□ 0.19
NEDD9-215ENST00000514660 SPATA31A7Q8IWB4 1347 aa16.21■□□□□ 0.19
NEDD9-215ENST00000514660 PHF8Q9UPP1 1060 aa16.21■□□□□ 0.19
NEDD9-215ENST00000514660 SBNO1A3KN83 1393 aa16.21■□□□□ 0.19
NEDD9-215ENST00000514660 ABCC11Q96J66 1382 aa16.2■□□□□ 0.18
NEDD9-215ENST00000514660 NRXN1Q9ULB1 1477 aa16.2■□□□□ 0.18
NEDD9-215ENST00000514660 RPGRIP1LQ68CZ1 1315 aa16.19■□□□□ 0.18
NEDD9-215ENST00000514660 TRPM3Q9HCF6 1732 aaPredicted RBP16.19■□□□□ 0.18
NEDD9-215ENST00000514660 CRYBG1Q9Y4K1 1723 aa16.19■□□□□ 0.18
NEDD9-215ENST00000514660 COL14A1Q05707 1796 aaKnown RBP16.18■□□□□ 0.18
NEDD9-215ENST00000514660 LMOD2Q6P5Q4 547 aa16.18■□□□□ 0.18
NEDD9-215ENST00000514660 ALS2Q96Q42 1657 aa16.17■□□□□ 0.18
NEDD9-215ENST00000514660 APBA3O96018 575 aa16.16■□□□□ 0.18
NEDD9-215ENST00000514660 ADGRB2O60241 1585 aa16.16■□□□□ 0.18
NEDD9-215ENST00000514660 PSME1Q06323 249 aa16.15■□□□□ 0.18
NEDD9-215ENST00000514660 ZNF784Q8NCA9 323 aaPredicted RBP16.15■□□□□ 0.18
NEDD9-215ENST00000514660 ARHGEF10O15013 1369 aa16.14■□□□□ 0.17
NEDD9-215ENST00000514660 RRBP1Q9P2E9 1410 aaKnown RBP16.14■□□□□ 0.17
NEDD9-215ENST00000514660 IFFO2Q5TF58 517 aa16.14■□□□□ 0.17
NEDD9-215ENST00000514660 PMFBP1Q8TBY8 1022 aa16.14■□□□□ 0.17
NEDD9-215ENST00000514660 YTHDC2Q9H6S0 1430 aaKnown RBP16.13■□□□□ 0.17
NEDD9-215ENST00000514660 KCNQ2O43526 872 aa16.12■□□□□ 0.17
NEDD9-215ENST00000514660 SPATA31A1Q5TZJ5 1347 aa16.12■□□□□ 0.17
NEDD9-215ENST00000514660 PARD3Q8TEW0 1356 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms