RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 UQCRHLA0A096LP55 91 aa13.75□□□□□ -0.21
TCOF1-211ENST00000513346 HMMRO75330 724 aa13.75□□□□□ -0.21
TCOF1-211ENST00000513346 UQCRHP07919 91 aa13.75□□□□□ -0.21
TCOF1-211ENST00000513346 SLC4A10Q6U841 1118 aa13.75□□□□□ -0.21
TCOF1-211ENST00000513346 ATP6V1DQ9Y5K8 247 aa13.75□□□□□ -0.21
TCOF1-211ENST00000513346 SKAP1Q86WV1 359 aa13.75□□□□□ -0.21
TCOF1-211ENST00000513346 HDAC5Q9UQL6 1122 aa13.75□□□□□ -0.21
TCOF1-211ENST00000513346 PLB1Q6P1J6 1458 aa13.74□□□□□ -0.21
TCOF1-211ENST00000513346 CIZ1Q9ULV3 898 aaPredicted RBP13.74□□□□□ -0.21
TCOF1-211ENST00000513346 TXNDC2Q86VQ3 553 aa13.73□□□□□ -0.21
TCOF1-211ENST00000513346 SLC52A1Q9NWF4 448 aa13.73□□□□□ -0.21
TCOF1-211ENST00000513346 REC8O95072 547 aa13.73□□□□□ -0.21
TCOF1-211ENST00000513346 FOXD4L6Q3SYB3 417 aaPredicted RBP13.73□□□□□ -0.21
TCOF1-211ENST00000513346 FOXD4L3Q6VB84 417 aaPredicted RBP13.73□□□□□ -0.21
TCOF1-211ENST00000513346 TRIM6-TRIM34B2RNG4 842 aa13.73□□□□□ -0.21
TCOF1-211ENST00000513346 LNPKQ9C0E8 428 aa13.73□□□□□ -0.21
TCOF1-211ENST00000513346 MAP3K1Q13233 1512 aa13.73□□□□□ -0.21
TCOF1-211ENST00000513346 ELL2O00472 640 aaPredicted RBP13.72□□□□□ -0.21
TCOF1-211ENST00000513346 RNF214Q8ND24 703 aa13.72□□□□□ -0.21
TCOF1-211ENST00000513346 CEBPAP49715 358 aaPredicted RBP13.72□□□□□ -0.21
TCOF1-211ENST00000513346 ANKLE2Q86XL3 938 aa13.71□□□□□ -0.21
TCOF1-211ENST00000513346 MBD3O95983 291 aa13.71□□□□□ -0.21
TCOF1-211ENST00000513346 CHMP3Q9Y3E7 222 aa13.71□□□□□ -0.21
TCOF1-211ENST00000513346 BCAR3O75815 825 aa13.71□□□□□ -0.21
TCOF1-211ENST00000513346 CCDC66A2RUB6 948 aa13.7□□□□□ -0.22
TCOF1-211ENST00000513346 TPM4P67936 248 aa13.7□□□□□ -0.22
TCOF1-211ENST00000513346 ZNF592Q92610 1267 aa13.7□□□□□ -0.22
TCOF1-211ENST00000513346 ROCK1Q13464 1354 aa13.7□□□□□ -0.22
TCOF1-211ENST00000513346 MEX3CQ5U5Q3 659 aaKnown RBP13.7□□□□□ -0.22
TCOF1-211ENST00000513346 RUNDC1Q96C34 613 aa13.7□□□□□ -0.22
TCOF1-211ENST00000513346 ARHGEF11O15085 1522 aa13.69□□□□□ -0.22
TCOF1-211ENST00000513346 GORABQ5T7V8 394 aa13.69□□□□□ -0.22
TCOF1-211ENST00000513346 NINLQ9Y2I6 1382 aa13.69□□□□□ -0.22
TCOF1-211ENST00000513346 TAF7LQ5H9L4 462 aa13.69□□□□□ -0.22
TCOF1-211ENST00000513346 TEX35Q5T0J7 233 aa13.68□□□□□ -0.22
TCOF1-211ENST00000513346 TPM3P06753 285 aa13.68□□□□□ -0.22
TCOF1-211ENST00000513346 CABP2Q9NPB3 220 aa13.68□□□□□ -0.22
TCOF1-211ENST00000513346 NCOA1Q15788 1441 aa13.68□□□□□ -0.22
TCOF1-211ENST00000513346 PRPF40AO75400 957 aaKnown RBP13.68□□□□□ -0.22
TCOF1-211ENST00000513346 PSME1Q06323 249 aa13.68□□□□□ -0.22
TCOF1-211ENST00000513346 PROSER2Q86WR7 435 aaPredicted RBP13.68□□□□□ -0.22
TCOF1-211ENST00000513346 ABCC5O15440 1437 aa13.68□□□□□ -0.22
TCOF1-211ENST00000513346 GOLGA6L1Q8N7Z2 621 aa13.68□□□□□ -0.22
TCOF1-211ENST00000513346 GOLGA6L19H0YKK7 550 aa13.67□□□□□ -0.22
TCOF1-211ENST00000513346 TULP1O00294 542 aaPredicted RBP13.67□□□□□ -0.22
TCOF1-211ENST00000513346 DIAPH1O60610 1272 aaKnown RBP13.67□□□□□ -0.22
TCOF1-211ENST00000513346 PPP2R1AP30153 589 aa13.67□□□□□ -0.22
TCOF1-211ENST00000513346 TEFQ10587 303 aa13.67□□□□□ -0.22
TCOF1-211ENST00000513346 C1orf141Q5JVX7 400 aa13.67□□□□□ -0.22
TCOF1-211ENST00000513346 C20orf194Q5TEA3 1177 aa13.67□□□□□ -0.22
TCOF1-211ENST00000513346 GGNBP2Q9H3C7 697 aa13.67□□□□□ -0.22
TCOF1-211ENST00000513346 XRCC6P12956 609 aaKnown RBP eCLIP13.67□□□□□ -0.22
TCOF1-211ENST00000513346 EVA1CP58658 441 aa13.67□□□□□ -0.22
TCOF1-211ENST00000513346 INTS3Q68E01 1043 aaKnown RBP13.67□□□□□ -0.22
TCOF1-211ENST00000513346 CDC45O75419 566 aa13.67□□□□□ -0.22
TCOF1-211ENST00000513346 TBC1D2Q9BYX2 928 aa13.66□□□□□ -0.22
TCOF1-211ENST00000513346 TSPY26PQ9H489 355 aa13.66□□□□□ -0.22
TCOF1-211ENST00000513346 PTPN23Q9H3S7 1636 aa13.66□□□□□ -0.22
TCOF1-211ENST00000513346 ANKRD30BQ9BXX2 1392 aa13.65□□□□□ -0.22
TCOF1-211ENST00000513346 K7ELQ4 463 aaPredicted RBP13.65□□□□□ -0.22
TCOF1-211ENST00000513346 SLC26A8Q96RN1 970 aa13.65□□□□□ -0.22
TCOF1-211ENST00000513346 IFT57Q9NWB7 429 aa13.65□□□□□ -0.22
TCOF1-211ENST00000513346 MAPKBP1O60336 1514 aa13.65□□□□□ -0.22
TCOF1-211ENST00000513346 RABEP1Q15276 862 aa13.65□□□□□ -0.22
TCOF1-211ENST00000513346 PPP6R1Q9UPN7 881 aa13.65□□□□□ -0.22
TCOF1-211ENST00000513346 BECN2A8MW95 431 aa13.64□□□□□ -0.23
TCOF1-211ENST00000513346 GPATCH3Q96I76 525 aa13.64□□□□□ -0.23
TCOF1-211ENST00000513346 DMRT2Q9Y5R5 561 aa13.64□□□□□ -0.23
TCOF1-211ENST00000513346 TEX14Q8IWB6 1497 aa13.64□□□□□ -0.23
TCOF1-211ENST00000513346 GPS2Q13227 327 aa13.64□□□□□ -0.23
TCOF1-211ENST00000513346 CAMSAP2Q08AD1 1489 aa13.64□□□□□ -0.23
TCOF1-211ENST00000513346 GTF2E1P29083 439 aaPredicted RBP13.63□□□□□ -0.23
TCOF1-211ENST00000513346 TMX4Q9H1E5 349 aaPredicted RBP13.63□□□□□ -0.23
TCOF1-211ENST00000513346 MTHFSP49914 203 aa13.63□□□□□ -0.23
TCOF1-211ENST00000513346 RIPK4P57078 832 aa13.63□□□□□ -0.23
TCOF1-211ENST00000513346 CWC22Q9HCG8 908 aaKnown RBP13.63□□□□□ -0.23
TCOF1-211ENST00000513346 TAF3Q5VWG9 929 aa13.62□□□□□ -0.23
TCOF1-211ENST00000513346 SASS6Q6UVJ0 657 aa13.62□□□□□ -0.23
TCOF1-211ENST00000513346 RILPL2Q969X0 211 aa13.62□□□□□ -0.23
TCOF1-211ENST00000513346 DENND4BO75064 1496 aaPredicted RBP13.62□□□□□ -0.23
TCOF1-211ENST00000513346 SLFN5Q08AF3 891 aa13.62□□□□□ -0.23
TCOF1-211ENST00000513346 SLC12A5Q9H2X9 1139 aa13.62□□□□□ -0.23
TCOF1-211ENST00000513346 LETM1O95202 739 aaPredicted RBP13.62□□□□□ -0.23
TCOF1-211ENST00000513346 PRDM10Q9NQV6 1147 aa13.61□□□□□ -0.23
TCOF1-211ENST00000513346 ADGRL1O94910 1474 aa13.61□□□□□ -0.23
TCOF1-211ENST00000513346 CCDC141Q6ZP82 1450 aa13.61□□□□□ -0.23
TCOF1-211ENST00000513346 KIF3AQ9Y496 699 aa13.6□□□□□ -0.23
TCOF1-211ENST00000513346 PIP4K2BP78356 416 aa13.6□□□□□ -0.23
TCOF1-211ENST00000513346 PANK2Q9BZ23 570 aa13.6□□□□□ -0.23
TCOF1-211ENST00000513346 RRAGDQ9NQL2 400 aaPredicted RBP13.6□□□□□ -0.23
TCOF1-211ENST00000513346 RBM33Q96EV2 1170 aaKnown RBP13.6□□□□□ -0.23
TCOF1-211ENST00000513346 API5Q9BZZ5 524 aaKnown RBP13.6□□□□□ -0.23
TCOF1-211ENST00000513346 TCP11L2Q8N4U5 519 aa13.6□□□□□ -0.23
TCOF1-211ENST00000513346 HMOX1P09601 288 aa13.59□□□□□ -0.23
TCOF1-211ENST00000513346 GNL2Q13823 731 aaKnown RBP13.59□□□□□ -0.23
TCOF1-211ENST00000513346 TTC5Q8N0Z6 440 aa13.59□□□□□ -0.23
TCOF1-211ENST00000513346 ARGLU1Q9NWB6 273 aaPredicted RBP13.59□□□□□ -0.23
TCOF1-211ENST00000513346 XPCQ01831 940 aaPredicted RBP13.59□□□□□ -0.23
TCOF1-211ENST00000513346 EIF2S2P20042 333 aaKnown RBP13.58□□□□□ -0.24
TCOF1-211ENST00000513346 DYNC1I1O14576 645 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms