RNA–Protein interactions for RNA: ENST00000512656.1

USP46-208, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 3

Gene USP46, Length 467 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-208ENST00000512656 A2ML1A8K2U0 1454 aa11.28□□□□□ -0.6
USP46-208ENST00000512656 TNRQ92752 1358 aa11.28□□□□□ -0.6
USP46-208ENST00000512656 KDM5DQ9BY66 1539 aa11.27□□□□□ -0.61
USP46-208ENST00000512656 NKX1-1Q15270 411 aaPredicted RBP11.27□□□□□ -0.61
USP46-208ENST00000512656 KRTAP3-3Q9BYR6 98 aa11.27□□□□□ -0.61
USP46-208ENST00000512656 KRTAP3-2Q9BYR7 98 aa11.27□□□□□ -0.61
USP46-208ENST00000512656 LTBP4Q8N2S1 1624 aa11.27□□□□□ -0.61
USP46-208ENST00000512656 MIA2Q96PC5 1412 aa11.26□□□□□ -0.61
USP46-208ENST00000512656 PZPP20742 1482 aa11.26□□□□□ -0.61
USP46-208ENST00000512656 TCOF1Q13428 1488 aaKnown RBP11.26□□□□□ -0.61
USP46-208ENST00000512656 ARSIQ5FYB1 569 aa11.26□□□□□ -0.61
USP46-208ENST00000512656 FBXO31Q5XUX0 539 aaPredicted RBP11.26□□□□□ -0.61
USP46-208ENST00000512656 SPNS2Q8IVW8 549 aa11.26□□□□□ -0.61
USP46-208ENST00000512656 MYOM3Q5VTT5 1437 aa11.26□□□□□ -0.61
USP46-208ENST00000512656 KANK4Q5T7N3 995 aaPredicted RBP11.25□□□□□ -0.61
USP46-208ENST00000512656 THEMISQ8N1K5 641 aaPredicted RBP11.25□□□□□ -0.61
USP46-208ENST00000512656 VARS2Q5ST30 1063 aaKnown RBP11.24□□□□□ -0.61
USP46-208ENST00000512656 ZNF335Q9H4Z2 1342 aaPredicted RBP11.24□□□□□ -0.61
USP46-208ENST00000512656 ANKLE2Q86XL3 938 aa11.23□□□□□ -0.61
USP46-208ENST00000512656 GPHNQ9NQX3 736 aaPredicted RBP11.23□□□□□ -0.61
USP46-208ENST00000512656 NLRP1Q9C000 1473 aa11.23□□□□□ -0.61
USP46-208ENST00000512656 MAST1Q9Y2H9 1570 aa11.23□□□□□ -0.61
USP46-208ENST00000512656 DNMT1P26358 1616 aaKnown RBP11.22□□□□□ -0.61
USP46-208ENST00000512656 FOXK1P85037 733 aa11.22□□□□□ -0.61
USP46-208ENST00000512656 ZNF687Q8N1G0 1237 aa11.22□□□□□ -0.61
USP46-208ENST00000512656 UBAP1LF5GYI3 381 aa11.21□□□□□ -0.61
USP46-208ENST00000512656 DISP3Q9P2K9 1392 aa11.2□□□□□ -0.62
USP46-208ENST00000512656 ZNF316A6NFI3 1004 aaPredicted RBP11.2□□□□□ -0.62
USP46-208ENST00000512656 MMRN1Q13201 1228 aa11.2□□□□□ -0.62
USP46-208ENST00000512656 RNF17Q9BXT8 1623 aaKnown RBP11.2□□□□□ -0.62
USP46-208ENST00000512656 DUOX2Q9NRD8 1548 aa11.19□□□□□ -0.62
USP46-208ENST00000512656 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.19□□□□□ -0.62
USP46-208ENST00000512656 PCDHGA4Q9Y5G9 962 aa11.19□□□□□ -0.62
USP46-208ENST00000512656 EIF2AK4Q9P2K8 1649 aaKnown RBP11.19□□□□□ -0.62
USP46-208ENST00000512656 UGGT1Q9NYU2 1555 aa11.18□□□□□ -0.62
USP46-208ENST00000512656 ABCC3O15438 1527 aa11.18□□□□□ -0.62
USP46-208ENST00000512656 ZC3H13Q5T200 1668 aaKnown RBP11.17□□□□□ -0.62
USP46-208ENST00000512656 KIF15Q9NS87 1388 aa11.17□□□□□ -0.62
USP46-208ENST00000512656 PTCD2Q8WV60 388 aaKnown RBP11.17□□□□□ -0.62
USP46-208ENST00000512656 SHANK2Q9UPX8 1470 aa11.17□□□□□ -0.62
USP46-208ENST00000512656 CPS1P31327 1500 aa11.16□□□□□ -0.62
USP46-208ENST00000512656 KHSRPQ92945 711 aaKnown RBP eCLIP11.16□□□□□ -0.62
USP46-208ENST00000512656 RRP7BPQ9NSQ0 103 aa11.16□□□□□ -0.62
USP46-208ENST00000512656 ERBINQ96RT1 1412 aa11.16□□□□□ -0.62
USP46-208ENST00000512656 SPATA31D1Q6ZQQ2 1576 aa11.16□□□□□ -0.62
USP46-208ENST00000512656 KANK1Q14678 1352 aa11.16□□□□□ -0.62
USP46-208ENST00000512656 POLR1AO95602 1720 aaPredicted RBP11.15□□□□□ -0.62
USP46-208ENST00000512656 MED14O60244 1454 aa11.15□□□□□ -0.62
USP46-208ENST00000512656 ERVK-7P63135 1459 aa11.15□□□□□ -0.62
USP46-208ENST00000512656 GTPBP6O43824 516 aaPredicted RBP11.15□□□□□ -0.62
USP46-208ENST00000512656 TOM1O60784 492 aa11.15□□□□□ -0.62
USP46-208ENST00000512656 ABCC5O15440 1437 aa11.15□□□□□ -0.62
USP46-208ENST00000512656 NPHP4O75161 1426 aaPredicted RBP11.15□□□□□ -0.62
USP46-208ENST00000512656 FGD6Q6ZV73 1430 aa11.15□□□□□ -0.62
USP46-208ENST00000512656 NEURL4Q96JN8 1562 aa11.15□□□□□ -0.62
USP46-208ENST00000512656 DEPDC5O75140 1603 aa11.14□□□□□ -0.63
USP46-208ENST00000512656 PTPN23Q9H3S7 1636 aa11.14□□□□□ -0.63
USP46-208ENST00000512656 NUDT7P0C024 238 aa11.14□□□□□ -0.63
USP46-208ENST00000512656 PLPP6Q8IY26 295 aa11.14□□□□□ -0.63
USP46-208ENST00000512656 ARHGAP31Q2M1Z3 1444 aa11.14□□□□□ -0.63
USP46-208ENST00000512656 ANKRD30AQ9BXX3 1397 aa11.14□□□□□ -0.63
USP46-208ENST00000512656 DAPK1P53355 1430 aa11.13□□□□□ -0.63
USP46-208ENST00000512656 CRISPLD2Q9H0B8 497 aa11.13□□□□□ -0.63
USP46-208ENST00000512656 MROH1Q8NDA8 1641 aa11.13□□□□□ -0.63
USP46-208ENST00000512656 PSDA5PKW4 1024 aaPredicted RBP11.12□□□□□ -0.63
USP46-208ENST00000512656 DSG2Q14126 1118 aa11.12□□□□□ -0.63
USP46-208ENST00000512656 PRDM15P57071 1507 aaPredicted RBP11.11□□□□□ -0.63
USP46-208ENST00000512656 TBC1D12O60347 775 aa11.11□□□□□ -0.63
USP46-208ENST00000512656 PIP4K2BP78356 416 aa11.11□□□□□ -0.63
USP46-208ENST00000512656 CHIC2Q9UKJ5 165 aa11.11□□□□□ -0.63
USP46-208ENST00000512656 EID1Q9Y6B2 187 aa11.11□□□□□ -0.63
USP46-208ENST00000512656 PBX2P40425 430 aa11.1□□□□□ -0.63
USP46-208ENST00000512656 VWDEQ8N2E2 1590 aa11.1□□□□□ -0.63
USP46-208ENST00000512656 CROCC2H7BZ55 1655 aa11.1□□□□□ -0.63
USP46-208ENST00000512656 CEP152O94986 1710 aa11.09□□□□□ -0.63
USP46-208ENST00000512656 IQGAP1P46940 1657 aa11.09□□□□□ -0.63
USP46-208ENST00000512656 SCAF11Q99590 1463 aaKnown RBP11.09□□□□□ -0.63
USP46-208ENST00000512656 PDE4AP27815 886 aa11.09□□□□□ -0.63
USP46-208ENST00000512656 ILDR2Q71H61 639 aa11.09□□□□□ -0.63
USP46-208ENST00000512656 TXNDC2Q86VQ3 553 aa11.09□□□□□ -0.63
USP46-208ENST00000512656 LHX6Q9UPM6 363 aa11.09□□□□□ -0.63
USP46-208ENST00000512656 SOCS7O14512 581 aa11.08□□□□□ -0.64
USP46-208ENST00000512656 PTGER2P43116 358 aa11.08□□□□□ -0.64
USP46-208ENST00000512656 FAM50AQ14320 339 aaKnown RBP11.08□□□□□ -0.64
USP46-208ENST00000512656 HSPA1LP34931 641 aa11.07□□□□□ -0.64
USP46-208ENST00000512656 AMER1Q5JTC6 1135 aaPredicted RBP11.07□□□□□ -0.64
USP46-208ENST00000512656 LMTK2Q8IWU2 1503 aa11.07□□□□□ -0.64
USP46-208ENST00000512656 UBR1Q8IWV7 1749 aa11.06□□□□□ -0.64
USP46-208ENST00000512656 ARHGAP23Q9P227 1491 aa11.06□□□□□ -0.64
USP46-208ENST00000512656 SLIT1O75093 1534 aa11.06□□□□□ -0.64
USP46-208ENST00000512656 CFAP65Q6ZU64 1925 aaKnown RBP11.06□□□□□ -0.64
USP46-208ENST00000512656 LTKP29376 864 aa11.06□□□□□ -0.64
USP46-208ENST00000512656 ADGRL2O95490 1459 aa11.06□□□□□ -0.64
USP46-208ENST00000512656 TMEM2Q9UHN6 1383 aa11.05□□□□□ -0.64
USP46-208ENST00000512656 SLC52A1Q9NWF4 448 aa11.05□□□□□ -0.64
USP46-208ENST00000512656 IDI1Q13907 227 aa11.04□□□□□ -0.64
USP46-208ENST00000512656 PPP1R15BQ5SWA1 713 aa11.04□□□□□ -0.64
USP46-208ENST00000512656 LRRC7Q96NW7 1537 aa11.04□□□□□ -0.64
USP46-208ENST00000512656 SYNMO15061 1565 aa11.03□□□□□ -0.64
USP46-208ENST00000512656 ANKRD50Q9ULJ7 1429 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms