RNA–Protein interactions for RNA: ENST00000510710.3

COL1A1-212, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 1,147 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-212ENST00000510710 RGL3Q3MIN7 710 aa22.33■■□□□ 1.17
COL1A1-212ENST00000510710 STK26Q9P289 416 aa22.32■■□□□ 1.16
COL1A1-212ENST00000510710 TRPC5Q9UL62 973 aaPredicted RBP22.32■■□□□ 1.16
COL1A1-212ENST00000510710 NPHP3Q7Z494 1330 aa22.31■■□□□ 1.16
COL1A1-212ENST00000510710 ADGRF5Q8IZF2 1346 aa22.31■■□□□ 1.16
COL1A1-212ENST00000510710 CCDC144AA2RUR9 1427 aa22.31■■□□□ 1.16
COL1A1-212ENST00000510710 FNBP4Q8N3X1 1017 aaPredicted RBP22.3■■□□□ 1.16
COL1A1-212ENST00000510710 FOXO3O43524 673 aa22.28■■□□□ 1.16
COL1A1-212ENST00000510710 WAPLQ7Z5K2 1190 aa22.28■■□□□ 1.16
COL1A1-212ENST00000510710 NUTM2FA1L443 756 aa22.27■■□□□ 1.16
COL1A1-212ENST00000510710 XPCQ01831 940 aaPredicted RBP22.27■■□□□ 1.16
COL1A1-212ENST00000510710 CDC42BPGQ6DT37 1551 aa22.27■■□□□ 1.16
COL1A1-212ENST00000510710 MPHOSPH9Q99550 1183 aa22.27■■□□□ 1.16
COL1A1-212ENST00000510710 COL22A1Q8NFW1 1626 aaPredicted RBP22.26■■□□□ 1.15
COL1A1-212ENST00000510710 LRPPRCP42704 1394 aaKnown RBP22.25■■□□□ 1.15
COL1A1-212ENST00000510710 ANKRD30BQ9BXX2 1392 aa22.25■■□□□ 1.15
COL1A1-212ENST00000510710 TMEM132EQ6IEE7 984 aa22.25■■□□□ 1.15
COL1A1-212ENST00000510710 ATAD2Q6PL18 1390 aa22.25■■□□□ 1.15
COL1A1-212ENST00000510710 SPATA31E1Q6ZUB1 1445 aa22.23■■□□□ 1.15
COL1A1-212ENST00000510710 PXDNQ92626 1479 aa22.23■■□□□ 1.15
COL1A1-212ENST00000510710 ATRNO75882 1429 aa22.23■■□□□ 1.15
COL1A1-212ENST00000510710 ABCC11Q96J66 1382 aa22.22■■□□□ 1.15
COL1A1-212ENST00000510710 TECPR2O15040 1411 aa22.22■■□□□ 1.15
COL1A1-212ENST00000510710 MYOM2P54296 1465 aa22.22■■□□□ 1.15
COL1A1-212ENST00000510710 PLEKHH1Q9ULM0 1364 aa22.2■■□□□ 1.14
COL1A1-212ENST00000510710 IFT172Q9UG01 1749 aa22.19■■□□□ 1.14
COL1A1-212ENST00000510710 BCL9LQ86UU0 1499 aa22.17■■□□□ 1.14
COL1A1-212ENST00000510710 PIK3C2GO75747 1445 aa22.17■■□□□ 1.14
COL1A1-212ENST00000510710 YTHDC2Q9H6S0 1430 aaKnown RBP22.17■■□□□ 1.14
COL1A1-212ENST00000510710 MARF1Q9Y4F3 1742 aaKnown RBP22.17■■□□□ 1.14
COL1A1-212ENST00000510710 GJD4Q96KN9 370 aaPredicted RBP22.16■■□□□ 1.14
COL1A1-212ENST00000510710 KNDC1Q76NI1 1749 aa22.16■■□□□ 1.14
COL1A1-212ENST00000510710 SIRT1Q96EB6 747 aa22.15■■□□□ 1.14
COL1A1-212ENST00000510710 SPATA31A3Q5VYP0 1347 aa22.14■■□□□ 1.14
COL1A1-212ENST00000510710 KRT28Q7Z3Y7 464 aa22.14■■□□□ 1.13
COL1A1-212ENST00000510710 FMN2Q9NZ56 1722 aa22.14■■□□□ 1.13
COL1A1-212ENST00000510710 C14orf93Q9H972 538 aaKnown RBP22.13■■□□□ 1.13
COL1A1-212ENST00000510710 UNC5CLQ8IV45 518 aa22.12■■□□□ 1.13
COL1A1-212ENST00000510710 ACIN1Q9UKV3 1341 aaKnown RBP22.11■■□□□ 1.13
COL1A1-212ENST00000510710 KIF1AQ12756 1690 aa22.11■■□□□ 1.13
COL1A1-212ENST00000510710 HAP1P54257 671 aaPredicted RBP22.11■■□□□ 1.13
COL1A1-212ENST00000510710 PSME1Q06323 249 aa22.11■■□□□ 1.13
COL1A1-212ENST00000510710 CCDC125Q86Z20 511 aa22.11■■□□□ 1.13
COL1A1-212ENST00000510710 DHX57Q6P158 1386 aaKnown RBP22.11■■□□□ 1.13
COL1A1-212ENST00000510710 CFAP70Q5T0N1 1121 aa22.1■■□□□ 1.13
COL1A1-212ENST00000510710 PHF8Q9UPP1 1060 aa22.1■■□□□ 1.13
COL1A1-212ENST00000510710 ZRANB1Q9UGI0 708 aa22.09■■□□□ 1.13
COL1A1-212ENST00000510710 SAFB2Q14151 953 aaKnown RBP eCLIP22.08■■□□□ 1.13
COL1A1-212ENST00000510710 PLEKHG5O94827 1062 aa22.07■■□□□ 1.12
COL1A1-212ENST00000510710 SLIT2O94813 1529 aa22.06■■□□□ 1.12
COL1A1-212ENST00000510710 LMOD2Q6P5Q4 547 aa22.06■■□□□ 1.12
COL1A1-212ENST00000510710 PRAM1Q96QH2 718 aa22.06■■□□□ 1.12
COL1A1-212ENST00000510710 RGPD8O14715 1765 aaPredicted RBP22.06■■□□□ 1.12
COL1A1-212ENST00000510710 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.06■■□□□ 1.12
COL1A1-212ENST00000510710 RALGAPBQ86X10 1494 aa22.05■■□□□ 1.12
COL1A1-212ENST00000510710 CABLES1Q8TDN4 633 aa22.05■■□□□ 1.12
COL1A1-212ENST00000510710 POGKQ9P215 609 aa22.05■■□□□ 1.12
COL1A1-212ENST00000510710 NRXN1Q9ULB1 1477 aa22.04■■□□□ 1.12
COL1A1-212ENST00000510710 TNS3Q68CZ2 1445 aa22.04■■□□□ 1.12
COL1A1-212ENST00000510710 USP32Q8NFA0 1604 aa22.03■■□□□ 1.12
COL1A1-212ENST00000510710 SBNO1A3KN83 1393 aa22.01■■□□□ 1.11
COL1A1-212ENST00000510710 GLI3P10071 1580 aa22.01■■□□□ 1.11
COL1A1-212ENST00000510710 PMFBP1Q8TBY8 1022 aa22.01■■□□□ 1.11
COL1A1-212ENST00000510710 CCDC9Q9Y3X0 531 aaKnown RBP22.01■■□□□ 1.11
COL1A1-212ENST00000510710 VPS72Q15906 364 aa22■■□□□ 1.11
COL1A1-212ENST00000510710 ARHGEF10O15013 1369 aa21.99■■□□□ 1.11
COL1A1-212ENST00000510710 SEPT12Q8IYM1 358 aa21.99■■□□□ 1.11
COL1A1-212ENST00000510710 BLMP54132 1417 aaPredicted RBP21.97■■□□□ 1.11
COL1A1-212ENST00000510710 SF3B2Q13435 895 aaKnown RBP21.97■■□□□ 1.11
COL1A1-212ENST00000510710 DLC1Q96QB1 1528 aa21.96■■□□□ 1.11
COL1A1-212ENST00000510710 TRAK1Q9UPV9 953 aa21.96■■□□□ 1.11
COL1A1-212ENST00000510710 ANKARQ7Z5J8 1434 aa21.96■■□□□ 1.11
COL1A1-212ENST00000510710 FAM83GA6ND36 823 aa21.95■■□□□ 1.1
COL1A1-212ENST00000510710 HIRIP3Q9BW71 556 aaPredicted RBP21.95■■□□□ 1.1
COL1A1-212ENST00000510710 KDM2AQ9Y2K7 1162 aa21.95■■□□□ 1.1
COL1A1-212ENST00000510710 BRWD3Q6RI45 1802 aa21.94■■□□□ 1.1
COL1A1-212ENST00000510710 EP400Q96L91 3159 aa21.94■■□□□ 1.1
COL1A1-212ENST00000510710 RAB3GAP2Q9H2M9 1393 aa21.94■■□□□ 1.1
COL1A1-212ENST00000510710 ONECUT3O60422 494 aaPredicted RBP21.93■■□□□ 1.1
COL1A1-212ENST00000510710 PLCH1Q4KWH8 1693 aa21.93■■□□□ 1.1
COL1A1-212ENST00000510710 MINK1Q8N4C8 1332 aaPredicted RBP21.93■■□□□ 1.1
COL1A1-212ENST00000510710 NWD2Q9ULI1 1742 aa21.93■■□□□ 1.1
COL1A1-212ENST00000510710 KRT27Q7Z3Y8 459 aa21.92■■□□□ 1.1
COL1A1-212ENST00000510710 DEFB132Q7Z7B7 95 aa21.92■■□□□ 1.1
COL1A1-212ENST00000510710 DCAF11Q8TEB1 546 aa21.92■■□□□ 1.1
COL1A1-212ENST00000510710 GPRASP1Q5JY77 1395 aa21.91■■□□□ 1.1
COL1A1-212ENST00000510710 A0A0G2JS52 829 aa21.91■■□□□ 1.1
COL1A1-212ENST00000510710 MYT1Q01538 1121 aa21.91■■□□□ 1.1
COL1A1-212ENST00000510710 ABCA3Q99758 1704 aa21.91■■□□□ 1.1
COL1A1-212ENST00000510710 EIF3AQ14152 1382 aaKnown RBP21.9■■□□□ 1.1
COL1A1-212ENST00000510710 ADGRB1O14514 1584 aa21.9■■□□□ 1.1
COL1A1-212ENST00000510710 ADGRB2O60241 1585 aa21.9■■□□□ 1.1
COL1A1-212ENST00000510710 BTG4Q9NY30 223 aa21.89■■□□□ 1.09
COL1A1-212ENST00000510710 WASLO00401 505 aaPredicted RBP21.88■■□□□ 1.09
COL1A1-212ENST00000510710 NGDNQ8NEJ9 315 aaKnown RBP21.87■■□□□ 1.09
COL1A1-212ENST00000510710 PRR36Q9H6K5 1346 aa21.86■■□□□ 1.09
COL1A1-212ENST00000510710 PAK3O75914 559 aaPredicted RBP21.86■■□□□ 1.09
COL1A1-212ENST00000510710 FAM98CQ17RN3 349 aaKnown RBP21.86■■□□□ 1.09
COL1A1-212ENST00000510710 STAC3Q96MF2 364 aa21.86■■□□□ 1.09
COL1A1-212ENST00000510710 TRPM3Q9HCF6 1732 aaPredicted RBP21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms