RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 MYOM2P54296 1465 aa26.35■■□□□ 1.81
TPM3-220ENST00000509601 LRP6O75581 1613 aa26.33■■□□□ 1.81
TPM3-220ENST00000509601 NHSL1Q5SYE7 1610 aa26.33■■□□□ 1.81
TPM3-220ENST00000509601 SHPRHQ149N8 1683 aa26.31■■□□□ 1.8
TPM3-220ENST00000509601 DCAF11Q8TEB1 546 aa26.3■■□□□ 1.8
TPM3-220ENST00000509601 KDM2AQ9Y2K7 1162 aa26.3■■□□□ 1.8
TPM3-220ENST00000509601 SOS2Q07890 1332 aaPredicted RBP26.29■■□□□ 1.8
TPM3-220ENST00000509601 DHX57Q6P158 1386 aaKnown RBP26.29■■□□□ 1.8
TPM3-220ENST00000509601 NUTM2BA6NNL0 878 aaPredicted RBP26.28■■□□□ 1.8
TPM3-220ENST00000509601 NUTM2EB1AL46 878 aaPredicted RBP26.28■■□□□ 1.8
TPM3-220ENST00000509601 NUTM2AQ8IVF1 878 aaPredicted RBP26.28■■□□□ 1.8
TPM3-220ENST00000509601 ESCO1Q5FWF5 840 aa26.27■■□□□ 1.8
TPM3-220ENST00000509601 KNDC1Q76NI1 1749 aa26.27■■□□□ 1.8
TPM3-220ENST00000509601 CDC42BPGQ6DT37 1551 aa26.25■■□□□ 1.79
TPM3-220ENST00000509601 NUTM2FA1L443 756 aa26.25■■□□□ 1.79
TPM3-220ENST00000509601 MEX3CQ5U5Q3 659 aaKnown RBP26.25■■□□□ 1.79
TPM3-220ENST00000509601 STAC3Q96MF2 364 aa26.25■■□□□ 1.79
TPM3-220ENST00000509601 LAMC1P11047 1609 aa26.25■■□□□ 1.79
TPM3-220ENST00000509601 PNPLA6Q8IY17 1366 aa26.24■■□□□ 1.79
TPM3-220ENST00000509601 PRAM1Q96QH2 718 aa26.22■■□□□ 1.79
TPM3-220ENST00000509601 FOXO3O43524 673 aa26.2■■□□□ 1.78
TPM3-220ENST00000509601 ZNF772Q68DY9 489 aaPredicted RBP26.19■■□□□ 1.78
TPM3-220ENST00000509601 ADGRB1O14514 1584 aa26.19■■□□□ 1.78
TPM3-220ENST00000509601 SAFB2Q14151 953 aaKnown RBP eCLIP26.18■■□□□ 1.78
TPM3-220ENST00000509601 TRAK1Q9UPV9 953 aa26.18■■□□□ 1.78
TPM3-220ENST00000509601 NPHP3Q7Z494 1330 aa26.17■■□□□ 1.78
TPM3-220ENST00000509601 POGKQ9P215 609 aa26.16■■□□□ 1.78
TPM3-220ENST00000509601 DLC1Q96QB1 1528 aa26.15■■□□□ 1.78
TPM3-220ENST00000509601 XPCQ01831 940 aaPredicted RBP26.14■■□□□ 1.78
TPM3-220ENST00000509601 FMN2Q9NZ56 1722 aa26.13■■□□□ 1.77
TPM3-220ENST00000509601 AFF2P51816 1311 aa26.13■■□□□ 1.77
TPM3-220ENST00000509601 PXDNQ92626 1479 aa26.12■■□□□ 1.77
TPM3-220ENST00000509601 C8orf37Q96NL8 207 aa26.11■■□□□ 1.77
TPM3-220ENST00000509601 ADAMTS2O95450 1211 aa26.1■■□□□ 1.77
TPM3-220ENST00000509601 PHF8Q9UPP1 1060 aa26.08■■□□□ 1.77
TPM3-220ENST00000509601 KRT28Q7Z3Y7 464 aa26.07■■□□□ 1.76
TPM3-220ENST00000509601 HIRIP3Q9BW71 556 aaPredicted RBP26.07■■□□□ 1.76
TPM3-220ENST00000509601 RXRBP28702 533 aa26.06■■□□□ 1.76
TPM3-220ENST00000509601 NGLY1Q96IV0 654 aa26.06■■□□□ 1.76
TPM3-220ENST00000509601 RGPD8O14715 1765 aaPredicted RBP26.05■■□□□ 1.76
TPM3-220ENST00000509601 MINK1Q8N4C8 1332 aaPredicted RBP26.05■■□□□ 1.76
TPM3-220ENST00000509601 QTRT2Q9H974 415 aaKnown RBP26.04■■□□□ 1.76
TPM3-220ENST00000509601 SPATA31A3Q5VYP0 1347 aa26.04■■□□□ 1.76
TPM3-220ENST00000509601 COL22A1Q8NFW1 1626 aaPredicted RBP26.03■■□□□ 1.76
TPM3-220ENST00000509601 NBPF1Q3BBV0 1214 aa26.02■■□□□ 1.76
TPM3-220ENST00000509601 SIN3AQ96ST3 1273 aa26.02■■□□□ 1.76
TPM3-220ENST00000509601 WASLO00401 505 aaPredicted RBP26.01■■□□□ 1.75
TPM3-220ENST00000509601 PRR36Q9H6K5 1346 aa26■■□□□ 1.75
TPM3-220ENST00000509601 FNBP4Q8N3X1 1017 aaPredicted RBP26■■□□□ 1.75
TPM3-220ENST00000509601 PMFBP1Q8TBY8 1022 aa26■■□□□ 1.75
TPM3-220ENST00000509601 KIF1AQ12756 1690 aa25.99■■□□□ 1.75
TPM3-220ENST00000509601 ANKARQ7Z5J8 1434 aa25.99■■□□□ 1.75
TPM3-220ENST00000509601 L3MBTL2Q969R5 705 aa25.99■■□□□ 1.75
TPM3-220ENST00000509601 ADGRB2O60241 1585 aa25.99■■□□□ 1.75
TPM3-220ENST00000509601 PSME1Q06323 249 aa25.98■■□□□ 1.75
TPM3-220ENST00000509601 USP32Q8NFA0 1604 aa25.98■■□□□ 1.75
TPM3-220ENST00000509601 RBM6P78332 1123 aaKnown RBP25.96■■□□□ 1.75
TPM3-220ENST00000509601 USP21Q9UK80 565 aa25.96■■□□□ 1.75
TPM3-220ENST00000509601 KIAA1210Q9ULL0 1709 aa25.93■■□□□ 1.74
TPM3-220ENST00000509601 SBNO1A3KN83 1393 aa25.93■■□□□ 1.74
TPM3-220ENST00000509601 ARHGEF28Q8N1W1 1705 aaKnown RBP25.92■■□□□ 1.74
TPM3-220ENST00000509601 NEUROD1Q13562 356 aa25.92■■□□□ 1.74
TPM3-220ENST00000509601 CDK12Q9NYV4 1490 aaPredicted RBP25.91■■□□□ 1.74
TPM3-220ENST00000509601 TNS3Q68CZ2 1445 aa25.9■■□□□ 1.74
TPM3-220ENST00000509601 CABLES1Q8TDN4 633 aa25.9■■□□□ 1.74
TPM3-220ENST00000509601 NUDT16Q96DE0 195 aaKnown RBP25.9■■□□□ 1.74
TPM3-220ENST00000509601 CDK19Q9BWU1 502 aa25.9■■□□□ 1.74
TPM3-220ENST00000509601 TRPC5Q9UL62 973 aaPredicted RBP25.9■■□□□ 1.74
TPM3-220ENST00000509601 EIF3AQ14152 1382 aaKnown RBP25.9■■□□□ 1.74
TPM3-220ENST00000509601 TULP4Q9NRJ4 1543 aa25.89■■□□□ 1.74
TPM3-220ENST00000509601 BCL9LQ86UU0 1499 aa25.88■■□□□ 1.73
TPM3-220ENST00000509601 LMOD2Q6P5Q4 547 aa25.87■■□□□ 1.73
TPM3-220ENST00000509601 UPF1Q92900 1129 aaKnown RBP eCLIP25.87■■□□□ 1.73
TPM3-220ENST00000509601 ATRNO75882 1429 aa25.86■■□□□ 1.73
TPM3-220ENST00000509601 NGDNQ8NEJ9 315 aaKnown RBP25.85■■□□□ 1.73
TPM3-220ENST00000509601 RGS12O14924 1447 aa25.84■■□□□ 1.73
TPM3-220ENST00000509601 MARF1Q9Y4F3 1742 aaKnown RBP25.84■■□□□ 1.73
TPM3-220ENST00000509601 GPRASP1Q5JY77 1395 aa25.83■■□□□ 1.73
TPM3-220ENST00000509601 PLEKHG5O94827 1062 aa25.83■■□□□ 1.73
TPM3-220ENST00000509601 ARHGEF10O15013 1369 aa25.82■■□□□ 1.72
TPM3-220ENST00000509601 ATP7BP35670 1465 aa25.82■■□□□ 1.72
TPM3-220ENST00000509601 TRIM26Q12899 539 aaPredicted RBP25.81■■□□□ 1.72
TPM3-220ENST00000509601 UNC5CLQ8IV45 518 aa25.81■■□□□ 1.72
TPM3-220ENST00000509601 SLIT2O94813 1529 aa25.81■■□□□ 1.72
TPM3-220ENST00000509601 CENPJQ9HC77 1338 aaPredicted RBP25.81■■□□□ 1.72
TPM3-220ENST00000509601 CCDC61Q9Y6R9 512 aa25.8■■□□□ 1.72
TPM3-220ENST00000509601 TRPM3Q9HCF6 1732 aaPredicted RBP25.8■■□□□ 1.72
TPM3-220ENST00000509601 HAP1P54257 671 aaPredicted RBP25.79■■□□□ 1.72
TPM3-220ENST00000509601 GJD4Q96KN9 370 aaPredicted RBP25.79■■□□□ 1.72
TPM3-220ENST00000509601 PLEKHG3A1L390 1219 aa25.78■■□□□ 1.72
TPM3-220ENST00000509601 FAM83GA6ND36 823 aa25.78■■□□□ 1.72
TPM3-220ENST00000509601 NBPF8Q3BBV2 869 aa25.78■■□□□ 1.72
TPM3-220ENST00000509601 ACEP12821 1306 aa25.75■■□□□ 1.71
TPM3-220ENST00000509601 PAK3O75914 559 aaPredicted RBP25.75■■□□□ 1.71
TPM3-220ENST00000509601 POLR3AO14802 1390 aaPredicted RBP25.74■■□□□ 1.71
TPM3-220ENST00000509601 CABP2Q9NPB3 220 aa25.74■■□□□ 1.71
TPM3-220ENST00000509601 ALS2Q96Q42 1657 aa25.74■■□□□ 1.71
TPM3-220ENST00000509601 SRPK2P78362 688 aaKnown RBP25.72■■□□□ 1.71
TPM3-220ENST00000509601 TRPM1Q7Z4N2 1603 aa25.72■■□□□ 1.71
TPM3-220ENST00000509601 ITSN1Q15811 1721 aa25.71■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms