RNA–Protein interactions for RNA: ENST00000509552.5

CCHCR1-228, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 1 (best)

Gene CCHCR1, Length 2,304 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-228ENST00000509552 TNNT2P45379 298 aaPredicted RBP23.33■■□□□ 1.33
CCHCR1-228ENST00000509552 USP32Q8NFA0 1604 aa23.33■■□□□ 1.33
CCHCR1-228ENST00000509552 SIGLEC1Q9BZZ2 1709 aa23.33■■□□□ 1.33
CCHCR1-228ENST00000509552 DIP2CQ9Y2E4 1556 aa23.33■■□□□ 1.33
CCHCR1-228ENST00000509552 NBR1Q14596 966 aa23.33■■□□□ 1.33
CCHCR1-228ENST00000509552 WWC1Q8IX03 1113 aa23.32■■□□□ 1.32
CCHCR1-228ENST00000509552 ARHGAP31Q2M1Z3 1444 aa23.32■■□□□ 1.32
CCHCR1-228ENST00000509552 NEXMIFQ5QGS0 1516 aa23.31■■□□□ 1.32
CCHCR1-228ENST00000509552 NUTM2DQ5VT03 806 aaPredicted RBP23.31■■□□□ 1.32
CCHCR1-228ENST00000509552 RUNDC1Q96C34 613 aa23.31■■□□□ 1.32
CCHCR1-228ENST00000509552 CFAP53Q96M91 514 aa23.31■■□□□ 1.32
CCHCR1-228ENST00000509552 BCAR3O75815 825 aa23.31■■□□□ 1.32
CCHCR1-228ENST00000509552 SKAP1Q86WV1 359 aa23.3■■□□□ 1.32
CCHCR1-228ENST00000509552 SHPRHQ149N8 1683 aa23.29■■□□□ 1.32
CCHCR1-228ENST00000509552 DMRT2Q9Y5R5 561 aa23.29■■□□□ 1.32
CCHCR1-228ENST00000509552 ANKRD36BQ8N2N9 1353 aa23.28■■□□□ 1.32
CCHCR1-228ENST00000509552 NSD2O96028 1365 aa23.28■■□□□ 1.32
CCHCR1-228ENST00000509552 SLC52A1Q9NWF4 448 aa23.28■■□□□ 1.32
CCHCR1-228ENST00000509552 ARHGEF28Q8N1W1 1705 aaKnown RBP23.28■■□□□ 1.32
CCHCR1-228ENST00000509552 NINLQ9Y2I6 1382 aa23.27■■□□□ 1.32
CCHCR1-228ENST00000509552 MTHFSP49914 203 aa23.27■■□□□ 1.32
CCHCR1-228ENST00000509552 IDI1Q13907 227 aa23.27■■□□□ 1.32
CCHCR1-228ENST00000509552 TULP4Q9NRJ4 1543 aa23.26■■□□□ 1.31
CCHCR1-228ENST00000509552 PDE3AQ14432 1141 aa23.26■■□□□ 1.31
CCHCR1-228ENST00000509552 ZFYVE9O95405 1425 aa23.25■■□□□ 1.31
CCHCR1-228ENST00000509552 DDRGK1Q96HY6 314 aa23.25■■□□□ 1.31
CCHCR1-228ENST00000509552 RICTORQ6R327 1708 aa23.25■■□□□ 1.31
CCHCR1-228ENST00000509552 CANXP27824 592 aaKnown RBP23.24■■□□□ 1.31
CCHCR1-228ENST00000509552 NEUROD2Q15784 382 aa23.24■■□□□ 1.31
CCHCR1-228ENST00000509552 TCP11L2Q8N4U5 519 aa23.24■■□□□ 1.31
CCHCR1-228ENST00000509552 RTL5Q5HYW3 569 aaPredicted RBP23.24■■□□□ 1.31
CCHCR1-228ENST00000509552 WDR63Q8IWG1 891 aa23.22■■□□□ 1.31
CCHCR1-228ENST00000509552 CABP2Q9NPB3 220 aa23.22■■□□□ 1.31
CCHCR1-228ENST00000509552 IQSEC2Q5JU85 1478 aa23.22■■□□□ 1.31
CCHCR1-228ENST00000509552 FAM161AQ3B820 660 aa23.21■■□□□ 1.31
CCHCR1-228ENST00000509552 RRP7AQ9Y3A4 280 aaKnown RBP23.21■■□□□ 1.31
CCHCR1-228ENST00000509552 DEKP35659 375 aaKnown RBP23.2■■□□□ 1.3
CCHCR1-228ENST00000509552 PHF23Q9BUL5 403 aaPredicted RBP23.2■■□□□ 1.3
CCHCR1-228ENST00000509552 YEATS2Q9ULM3 1422 aa23.19■■□□□ 1.3
CCHCR1-228ENST00000509552 SAFB2Q14151 953 aaKnown RBP eCLIP23.19■■□□□ 1.3
CCHCR1-228ENST00000509552 CCDC27Q2M243 656 aa23.19■■□□□ 1.3
CCHCR1-228ENST00000509552 NCBP3Q53F19 620 aaKnown RBP23.18■■□□□ 1.3
CCHCR1-228ENST00000509552 STK26Q9P289 416 aa23.18■■□□□ 1.3
CCHCR1-228ENST00000509552 SRPK2P78362 688 aaKnown RBP23.17■■□□□ 1.3
CCHCR1-228ENST00000509552 RGS3P49796 1198 aa23.16■■□□□ 1.3
CCHCR1-228ENST00000509552 U2AF1L5P0DN76 240 aaPredicted RBP23.15■■□□□ 1.3
CCHCR1-228ENST00000509552 U2AF1Q01081 240 aaKnown RBP eCLIP23.15■■□□□ 1.3
CCHCR1-228ENST00000509552 PREX1Q8TCU6 1659 aa23.15■■□□□ 1.3
CCHCR1-228ENST00000509552 RARSP54136 660 aaKnown RBP23.15■■□□□ 1.3
CCHCR1-228ENST00000509552 CLUAP1Q96AJ1 413 aa23.15■■□□□ 1.3
CCHCR1-228ENST00000509552 ABCC11Q96J66 1382 aa23.14■■□□□ 1.3
CCHCR1-228ENST00000509552 FRAT1Q92837 279 aaPredicted RBP23.14■■□□□ 1.3
CCHCR1-228ENST00000509552 A0A1W2PP64 1363 aa23.14■■□□□ 1.29
CCHCR1-228ENST00000509552 C8orf34Q49A92 452 aa23.14■■□□□ 1.29
CCHCR1-228ENST00000509552 MYH16Q9H6N6 1097 aa23.14■■□□□ 1.29
CCHCR1-228ENST00000509552 TMEM131LA2VDJ0 1609 aa23.14■■□□□ 1.29
CCHCR1-228ENST00000509552 ATAD2Q6PL18 1390 aa23.13■■□□□ 1.29
CCHCR1-228ENST00000509552 PANK1Q8TE04 598 aa23.13■■□□□ 1.29
CCHCR1-228ENST00000509552 BCL11AQ9H165 835 aa23.13■■□□□ 1.29
CCHCR1-228ENST00000509552 COG6Q9Y2V7 657 aa23.13■■□□□ 1.29
CCHCR1-228ENST00000509552 AAMPQ13685 434 aa23.13■■□□□ 1.29
CCHCR1-228ENST00000509552 TERF2IPQ9NYB0 399 aa23.12■■□□□ 1.29
CCHCR1-228ENST00000509552 POGKQ9P215 609 aa23.12■■□□□ 1.29
CCHCR1-228ENST00000509552 MYO5BQ9ULV0 1848 aa23.12■■□□□ 1.29
CCHCR1-228ENST00000509552 PPM1GO15355 546 aaPredicted RBP23.11■■□□□ 1.29
CCHCR1-228ENST00000509552 IGHDP01880 384 aa23.1■■□□□ 1.29
CCHCR1-228ENST00000509552 PTPRMP28827 1452 aa23.1■■□□□ 1.29
CCHCR1-228ENST00000509552 SENP3Q9H4L4 574 aaPredicted RBP23.1■■□□□ 1.29
CCHCR1-228ENST00000509552 PRAM1Q96QH2 718 aa23.09■■□□□ 1.29
CCHCR1-228ENST00000509552 YTHDC2Q9H6S0 1430 aaKnown RBP23.09■■□□□ 1.29
CCHCR1-228ENST00000509552 LAS1LQ9Y4W2 734 aaKnown RBP23.09■■□□□ 1.29
CCHCR1-228ENST00000509552 MINK1Q8N4C8 1332 aaPredicted RBP23.09■■□□□ 1.29
CCHCR1-228ENST00000509552 DAXXQ9UER7 740 aaPredicted RBP23.08■■□□□ 1.29
CCHCR1-228ENST00000509552 GGNBP2Q9H3C7 697 aa23.07■■□□□ 1.28
CCHCR1-228ENST00000509552 USP35Q9P2H5 1018 aa23.07■■□□□ 1.28
CCHCR1-228ENST00000509552 STAG3Q9UJ98 1225 aa23.07■■□□□ 1.28
CCHCR1-228ENST00000509552 ADGRB2O60241 1585 aa23.06■■□□□ 1.28
CCHCR1-228ENST00000509552 MAPK8IP3Q9UPT6 1336 aa23.06■■□□□ 1.28
CCHCR1-228ENST00000509552 PMFBP1Q8TBY8 1022 aa23.06■■□□□ 1.28
CCHCR1-228ENST00000509552 U2SURPO15042 1029 aaKnown RBP23.05■■□□□ 1.28
CCHCR1-228ENST00000509552 FBXO31Q5XUX0 539 aaPredicted RBP23.05■■□□□ 1.28
CCHCR1-228ENST00000509552 HDGFL2Q7Z4V5 671 aaPredicted RBP23.04■■□□□ 1.28
CCHCR1-228ENST00000509552 MED14O60244 1454 aa23.04■■□□□ 1.28
CCHCR1-228ENST00000509552 CLTCQ00610 1675 aaKnown RBP23.04■■□□□ 1.28
CCHCR1-228ENST00000509552 NEFMP07197 916 aa23.04■■□□□ 1.28
CCHCR1-228ENST00000509552 FYB1O15117 783 aa23.03■■□□□ 1.28
CCHCR1-228ENST00000509552 CT47B1P0C2W7 299 aaPredicted RBP23.03■■□□□ 1.28
CCHCR1-228ENST00000509552 BCL2L13Q9BXK5 485 aa23.02■■□□□ 1.28
CCHCR1-228ENST00000509552 ALKQ9UM73 1620 aa23.02■■□□□ 1.28
CCHCR1-228ENST00000509552 CYB5RLQ6IPT4 315 aa23.02■■□□□ 1.28
CCHCR1-228ENST00000509552 ANKRD26Q9UPS8 1709 aa23.01■■□□□ 1.27
CCHCR1-228ENST00000509552 PLEKHF1Q96S99 279 aa23■■□□□ 1.27
CCHCR1-228ENST00000509552 CDK19Q9BWU1 502 aa23■■□□□ 1.27
CCHCR1-228ENST00000509552 CD163L1Q9NR16 1453 aa23■■□□□ 1.27
CCHCR1-228ENST00000509552 PPP6R1Q9UPN7 881 aa23■■□□□ 1.27
CCHCR1-228ENST00000509552 COL3A1P02461 1466 aaPredicted RBP23■■□□□ 1.27
CCHCR1-228ENST00000509552 RLBP1P12271 317 aa22.99■■□□□ 1.27
CCHCR1-228ENST00000509552 TMPOP42166 694 aaKnown RBP22.99■■□□□ 1.27
CCHCR1-228ENST00000509552 FAM69CQ0P6D2 419 aa22.99■■□□□ 1.27
CCHCR1-228ENST00000509552 PNNQ9H307 717 aaKnown RBP22.99■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms