RNA–Protein interactions for RNA: ENST00000508319.1

HMGCS1-205, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 3

Gene HMGCS1, Length 591 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-205ENST00000508319 ABCC11Q96J66 1382 aa19.3■□□□□ 0.68
HMGCS1-205ENST00000508319 YTHDC2Q9H6S0 1430 aaKnown RBP19.28■□□□□ 0.68
HMGCS1-205ENST00000508319 NUTM2BA6NNL0 878 aaPredicted RBP19.28■□□□□ 0.68
HMGCS1-205ENST00000508319 NUTM2EB1AL46 878 aaPredicted RBP19.28■□□□□ 0.68
HMGCS1-205ENST00000508319 NUTM2AQ8IVF1 878 aaPredicted RBP19.28■□□□□ 0.68
HMGCS1-205ENST00000508319 PLEKHH1Q9ULM0 1364 aa19.28■□□□□ 0.68
HMGCS1-205ENST00000508319 SOS2Q07890 1332 aaPredicted RBP19.27■□□□□ 0.68
HMGCS1-205ENST00000508319 ZNF772Q68DY9 489 aaPredicted RBP19.27■□□□□ 0.68
HMGCS1-205ENST00000508319 TMEM132EQ6IEE7 984 aa19.27■□□□□ 0.68
HMGCS1-205ENST00000508319 FMN2Q9NZ56 1722 aa19.26■□□□□ 0.67
HMGCS1-205ENST00000508319 STK26Q9P289 416 aa19.26■□□□□ 0.67
HMGCS1-205ENST00000508319 WAPLQ7Z5K2 1190 aa19.25■□□□□ 0.67
HMGCS1-205ENST00000508319 COL22A1Q8NFW1 1626 aaPredicted RBP19.25■□□□□ 0.67
HMGCS1-205ENST00000508319 PXDNQ92626 1479 aa19.24■□□□□ 0.67
HMGCS1-205ENST00000508319 C14orf93Q9H972 538 aaKnown RBP19.23■□□□□ 0.67
HMGCS1-205ENST00000508319 AFF2P51816 1311 aa19.23■□□□□ 0.67
HMGCS1-205ENST00000508319 KIF1AQ12756 1690 aa19.2■□□□□ 0.66
HMGCS1-205ENST00000508319 ADGRB1O14514 1584 aa19.2■□□□□ 0.66
HMGCS1-205ENST00000508319 ESCO1Q5FWF5 840 aa19.2■□□□□ 0.66
HMGCS1-205ENST00000508319 CFAP70Q5T0N1 1121 aa19.2■□□□□ 0.66
HMGCS1-205ENST00000508319 NPHP3Q7Z494 1330 aa19.2■□□□□ 0.66
HMGCS1-205ENST00000508319 MSH5O43196 834 aa19.19■□□□□ 0.66
HMGCS1-205ENST00000508319 C8orf37Q96NL8 207 aa19.19■□□□□ 0.66
HMGCS1-205ENST00000508319 CDK12Q9NYV4 1490 aaPredicted RBP19.19■□□□□ 0.66
HMGCS1-205ENST00000508319 DLC1Q96QB1 1528 aa19.19■□□□□ 0.66
HMGCS1-205ENST00000508319 SIRT1Q96EB6 747 aa19.18■□□□□ 0.66
HMGCS1-205ENST00000508319 DHX57Q6P158 1386 aaKnown RBP19.18■□□□□ 0.66
HMGCS1-205ENST00000508319 RGPD8O14715 1765 aaPredicted RBP19.17■□□□□ 0.66
HMGCS1-205ENST00000508319 NUTM2FA1L443 756 aa19.17■□□□□ 0.66
HMGCS1-205ENST00000508319 HRCP23327 699 aa19.16■□□□□ 0.66
HMGCS1-205ENST00000508319 RXRBP28702 533 aa19.16■□□□□ 0.66
HMGCS1-205ENST00000508319 MARF1Q9Y4F3 1742 aaKnown RBP19.16■□□□□ 0.66
HMGCS1-205ENST00000508319 ADGRB2O60241 1585 aa19.15■□□□□ 0.66
HMGCS1-205ENST00000508319 FOXO3O43524 673 aa19.15■□□□□ 0.66
HMGCS1-205ENST00000508319 ADAMTS2O95450 1211 aa19.15■□□□□ 0.66
HMGCS1-205ENST00000508319 XPCQ01831 940 aaPredicted RBP19.14■□□□□ 0.65
HMGCS1-205ENST00000508319 USP32Q8NFA0 1604 aa19.12■□□□□ 0.65
HMGCS1-205ENST00000508319 RGS12O14924 1447 aa19.12■□□□□ 0.65
HMGCS1-205ENST00000508319 PRAM1Q96QH2 718 aa19.12■□□□□ 0.65
HMGCS1-205ENST00000508319 NGLY1Q96IV0 654 aa19.11■□□□□ 0.65
HMGCS1-205ENST00000508319 QTRT2Q9H974 415 aaKnown RBP19.1■□□□□ 0.65
HMGCS1-205ENST00000508319 SAFB2Q14151 953 aaKnown RBP eCLIP19.09■□□□□ 0.65
HMGCS1-205ENST00000508319 RBM6P78332 1123 aaKnown RBP19.08■□□□□ 0.64
HMGCS1-205ENST00000508319 FNBP4Q8N3X1 1017 aaPredicted RBP19.08■□□□□ 0.64
HMGCS1-205ENST00000508319 DCAF11Q8TEB1 546 aa19.08■□□□□ 0.64
HMGCS1-205ENST00000508319 ARHGEF28Q8N1W1 1705 aaKnown RBP19.08■□□□□ 0.64
HMGCS1-205ENST00000508319 ANKARQ7Z5J8 1434 aa19.08■□□□□ 0.64
HMGCS1-205ENST00000508319 SPATA31A3Q5VYP0 1347 aa19.07■□□□□ 0.64
HMGCS1-205ENST00000508319 UPF1Q92900 1129 aaKnown RBP eCLIP19.07■□□□□ 0.64
HMGCS1-205ENST00000508319 USP21Q9UK80 565 aa19.07■□□□□ 0.64
HMGCS1-205ENST00000508319 KDM2AQ9Y2K7 1162 aa19.07■□□□□ 0.64
HMGCS1-205ENST00000508319 PHF8Q9UPP1 1060 aa19.06■□□□□ 0.64
HMGCS1-205ENST00000508319 ATRNO75882 1429 aa19.06■□□□□ 0.64
HMGCS1-205ENST00000508319 TNS3Q68CZ2 1445 aa19.06■□□□□ 0.64
HMGCS1-205ENST00000508319 ABCA3Q99758 1704 aa19.05■□□□□ 0.64
HMGCS1-205ENST00000508319 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.05■□□□□ 0.64
HMGCS1-205ENST00000508319 BCL9LQ86UU0 1499 aa19.05■□□□□ 0.64
HMGCS1-205ENST00000508319 STAC3Q96MF2 364 aa19.05■□□□□ 0.64
HMGCS1-205ENST00000508319 POGKQ9P215 609 aa19.05■□□□□ 0.64
HMGCS1-205ENST00000508319 TRAK1Q9UPV9 953 aa19.05■□□□□ 0.64
HMGCS1-205ENST00000508319 TULP4Q9NRJ4 1543 aa19.04■□□□□ 0.64
HMGCS1-205ENST00000508319 KRT28Q7Z3Y7 464 aa19.03■□□□□ 0.64
HMGCS1-205ENST00000508319 TRPC5Q9UL62 973 aaPredicted RBP19.03■□□□□ 0.64
HMGCS1-205ENST00000508319 TRPM3Q9HCF6 1732 aaPredicted RBP19.03■□□□□ 0.64
HMGCS1-205ENST00000508319 SBNO1A3KN83 1393 aa19.02■□□□□ 0.64
HMGCS1-205ENST00000508319 KIAA1210Q9ULL0 1709 aa19.02■□□□□ 0.63
HMGCS1-205ENST00000508319 HIRIP3Q9BW71 556 aaPredicted RBP19.01■□□□□ 0.63
HMGCS1-205ENST00000508319 MINK1Q8N4C8 1332 aaPredicted RBP19■□□□□ 0.63
HMGCS1-205ENST00000508319 SLIT2O94813 1529 aa19■□□□□ 0.63
HMGCS1-205ENST00000508319 EP400Q96L91 3159 aa19■□□□□ 0.63
HMGCS1-205ENST00000508319 PRR36Q9H6K5 1346 aa19■□□□□ 0.63
HMGCS1-205ENST00000508319 EIF3AQ14152 1382 aaKnown RBP18.99■□□□□ 0.63
HMGCS1-205ENST00000508319 ALS2Q96Q42 1657 aa18.98■□□□□ 0.63
HMGCS1-205ENST00000508319 PLCH1Q4KWH8 1693 aa18.98■□□□□ 0.63
HMGCS1-205ENST00000508319 ITSN1Q15811 1721 aa18.97■□□□□ 0.63
HMGCS1-205ENST00000508319 ARHGEF10O15013 1369 aa18.97■□□□□ 0.63
HMGCS1-205ENST00000508319 PSME1Q06323 249 aa18.97■□□□□ 0.63
HMGCS1-205ENST00000508319 PMFBP1Q8TBY8 1022 aa18.97■□□□□ 0.63
HMGCS1-205ENST00000508319 GLI3P10071 1580 aa18.97■□□□□ 0.63
HMGCS1-205ENST00000508319 ATP7BP35670 1465 aa18.97■□□□□ 0.63
HMGCS1-205ENST00000508319 WASLO00401 505 aaPredicted RBP18.96■□□□□ 0.63
HMGCS1-205ENST00000508319 NWD2Q9ULI1 1742 aa18.96■□□□□ 0.63
HMGCS1-205ENST00000508319 CABLES1Q8TDN4 633 aa18.94■□□□□ 0.62
HMGCS1-205ENST00000508319 TOPAZ1Q8N9V7 1692 aa18.94■□□□□ 0.62
HMGCS1-205ENST00000508319 CRYBG1Q9Y4K1 1723 aa18.94■□□□□ 0.62
HMGCS1-205ENST00000508319 ATAD2Q6PL18 1390 aa18.93■□□□□ 0.62
HMGCS1-205ENST00000508319 RALGAPBQ86X10 1494 aa18.93■□□□□ 0.62
HMGCS1-205ENST00000508319 UNC5CLQ8IV45 518 aa18.92■□□□□ 0.62
HMGCS1-205ENST00000508319 GJD4Q96KN9 370 aaPredicted RBP18.92■□□□□ 0.62
HMGCS1-205ENST00000508319 GPRASP1Q5JY77 1395 aa18.92■□□□□ 0.62
HMGCS1-205ENST00000508319 LMOD2Q6P5Q4 547 aa18.91■□□□□ 0.62
HMGCS1-205ENST00000508319 HAP1P54257 671 aaPredicted RBP18.9■□□□□ 0.62
HMGCS1-205ENST00000508319 NRAPQ86VF7 1730 aa18.9■□□□□ 0.62
HMGCS1-205ENST00000508319 PLEKHG5O94827 1062 aa18.89■□□□□ 0.61
HMGCS1-205ENST00000508319 NBPF1Q3BBV0 1214 aa18.88■□□□□ 0.61
HMGCS1-205ENST00000508319 BRWD3Q6RI45 1802 aa18.87■□□□□ 0.61
HMGCS1-205ENST00000508319 COL14A1Q05707 1796 aaKnown RBP18.86■□□□□ 0.61
HMGCS1-205ENST00000508319 NGDNQ8NEJ9 315 aaKnown RBP18.86■□□□□ 0.61
HMGCS1-205ENST00000508319 NUDT16Q96DE0 195 aaKnown RBP18.86■□□□□ 0.61
HMGCS1-205ENST00000508319 QRICH2Q9H0J4 1663 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms