RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 STK26Q9P289 416 aa17.17■□□□□ 0.34
HMGCS1-204ENST00000507293 COL22A1Q8NFW1 1626 aaPredicted RBP17.17■□□□□ 0.34
HMGCS1-204ENST00000507293 FMN2Q9NZ56 1722 aa17.16■□□□□ 0.34
HMGCS1-204ENST00000507293 SOS2Q07890 1332 aaPredicted RBP17.16■□□□□ 0.34
HMGCS1-204ENST00000507293 C8orf37Q96NL8 207 aa17.15■□□□□ 0.34
HMGCS1-204ENST00000507293 CDK12Q9NYV4 1490 aaPredicted RBP17.14■□□□□ 0.33
HMGCS1-204ENST00000507293 RXRBP28702 533 aa17.14■□□□□ 0.33
HMGCS1-204ENST00000507293 TMEM132EQ6IEE7 984 aa17.14■□□□□ 0.33
HMGCS1-204ENST00000507293 ACIN1Q9UKV3 1341 aaKnown RBP17.14■□□□□ 0.33
HMGCS1-204ENST00000507293 PLEKHH1Q9ULM0 1364 aa17.14■□□□□ 0.33
HMGCS1-204ENST00000507293 MYOM2P54296 1465 aa17.13■□□□□ 0.33
HMGCS1-204ENST00000507293 WAPLQ7Z5K2 1190 aa17.13■□□□□ 0.33
HMGCS1-204ENST00000507293 ABCC11Q96J66 1382 aa17.13■□□□□ 0.33
HMGCS1-204ENST00000507293 RAB3GAP2Q9H2M9 1393 aa17.13■□□□□ 0.33
HMGCS1-204ENST00000507293 MARF1Q9Y4F3 1742 aaKnown RBP17.13■□□□□ 0.33
HMGCS1-204ENST00000507293 YTHDC2Q9H6S0 1430 aaKnown RBP17.13■□□□□ 0.33
HMGCS1-204ENST00000507293 PXDNQ92626 1479 aa17.12■□□□□ 0.33
HMGCS1-204ENST00000507293 ADAMTS2O95450 1211 aa17.12■□□□□ 0.33
HMGCS1-204ENST00000507293 KIF1AQ12756 1690 aa17.12■□□□□ 0.33
HMGCS1-204ENST00000507293 RGPD8O14715 1765 aaPredicted RBP17.12■□□□□ 0.33
HMGCS1-204ENST00000507293 NRXN1Q9ULB1 1477 aa17.12■□□□□ 0.33
HMGCS1-204ENST00000507293 ESCO1Q5FWF5 840 aa17.11■□□□□ 0.33
HMGCS1-204ENST00000507293 NPHP3Q7Z494 1330 aa17.1■□□□□ 0.33
HMGCS1-204ENST00000507293 NUTM2FA1L443 756 aa17.09■□□□□ 0.33
HMGCS1-204ENST00000507293 RGS12O14924 1447 aa17.09■□□□□ 0.33
HMGCS1-204ENST00000507293 NGLY1Q96IV0 654 aa17.08■□□□□ 0.32
HMGCS1-204ENST00000507293 XPCQ01831 940 aaPredicted RBP17.07■□□□□ 0.32
HMGCS1-204ENST00000507293 UPF1Q92900 1129 aaKnown RBP eCLIP17.07■□□□□ 0.32
HMGCS1-204ENST00000507293 C14orf93Q9H972 538 aaKnown RBP17.07■□□□□ 0.32
HMGCS1-204ENST00000507293 QTRT2Q9H974 415 aaKnown RBP17.07■□□□□ 0.32
HMGCS1-204ENST00000507293 FOXO3O43524 673 aa17.06■□□□□ 0.32
HMGCS1-204ENST00000507293 CFAP70Q5T0N1 1121 aa17.06■□□□□ 0.32
HMGCS1-204ENST00000507293 DHX57Q6P158 1386 aaKnown RBP17.05■□□□□ 0.32
HMGCS1-204ENST00000507293 RBM6P78332 1123 aaKnown RBP17.05■□□□□ 0.32
HMGCS1-204ENST00000507293 SIRT1Q96EB6 747 aa17.04■□□□□ 0.32
HMGCS1-204ENST00000507293 DLC1Q96QB1 1528 aa17.03■□□□□ 0.32
HMGCS1-204ENST00000507293 USP21Q9UK80 565 aa17.03■□□□□ 0.32
HMGCS1-204ENST00000507293 ADGRB1O14514 1584 aa17.02■□□□□ 0.32
HMGCS1-204ENST00000507293 ADGRB2O60241 1585 aa17.02■□□□□ 0.31
HMGCS1-204ENST00000507293 USP32Q8NFA0 1604 aa17.01■□□□□ 0.31
HMGCS1-204ENST00000507293 ATRNO75882 1429 aa17.01■□□□□ 0.31
HMGCS1-204ENST00000507293 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.01■□□□□ 0.31
HMGCS1-204ENST00000507293 FNBP4Q8N3X1 1017 aaPredicted RBP17■□□□□ 0.31
HMGCS1-204ENST00000507293 PRAM1Q96QH2 718 aa17■□□□□ 0.31
HMGCS1-204ENST00000507293 ABCA3Q99758 1704 aa17■□□□□ 0.31
HMGCS1-204ENST00000507293 SAFB2Q14151 953 aaKnown RBP eCLIP16.99■□□□□ 0.31
HMGCS1-204ENST00000507293 TRPC5Q9UL62 973 aaPredicted RBP16.99■□□□□ 0.31
HMGCS1-204ENST00000507293 SPATA31A3Q5VYP0 1347 aa16.98■□□□□ 0.31
HMGCS1-204ENST00000507293 BCL9LQ86UU0 1499 aa16.98■□□□□ 0.31
HMGCS1-204ENST00000507293 KRT28Q7Z3Y7 464 aa16.97■□□□□ 0.31
HMGCS1-204ENST00000507293 PHF8Q9UPP1 1060 aa16.97■□□□□ 0.31
HMGCS1-204ENST00000507293 TNS3Q68CZ2 1445 aa16.96■□□□□ 0.31
HMGCS1-204ENST00000507293 POGKQ9P215 609 aa16.96■□□□□ 0.31
HMGCS1-204ENST00000507293 ARHGEF28Q8N1W1 1705 aaKnown RBP16.96■□□□□ 0.3
HMGCS1-204ENST00000507293 ANKARQ7Z5J8 1434 aa16.96■□□□□ 0.3
HMGCS1-204ENST00000507293 KDM2AQ9Y2K7 1162 aa16.95■□□□□ 0.3
HMGCS1-204ENST00000507293 PLCH1Q4KWH8 1693 aa16.94■□□□□ 0.3
HMGCS1-204ENST00000507293 TRPM3Q9HCF6 1732 aaPredicted RBP16.94■□□□□ 0.3
HMGCS1-204ENST00000507293 DCAF11Q8TEB1 546 aa16.94■□□□□ 0.3
HMGCS1-204ENST00000507293 TRAK1Q9UPV9 953 aa16.94■□□□□ 0.3
HMGCS1-204ENST00000507293 ATAD2Q6PL18 1390 aa16.93■□□□□ 0.3
HMGCS1-204ENST00000507293 SLIT2O94813 1529 aa16.93■□□□□ 0.3
HMGCS1-204ENST00000507293 SBNO1A3KN83 1393 aa16.92■□□□□ 0.3
HMGCS1-204ENST00000507293 HRCP23327 699 aa16.92■□□□□ 0.3
HMGCS1-204ENST00000507293 PSME1Q06323 249 aa16.92■□□□□ 0.3
HMGCS1-204ENST00000507293 GLI3P10071 1580 aa16.92■□□□□ 0.3
HMGCS1-204ENST00000507293 TULP4Q9NRJ4 1543 aa16.91■□□□□ 0.3
HMGCS1-204ENST00000507293 NWD2Q9ULI1 1742 aa16.91■□□□□ 0.3
HMGCS1-204ENST00000507293 HIRIP3Q9BW71 556 aaPredicted RBP16.91■□□□□ 0.3
HMGCS1-204ENST00000507293 MINK1Q8N4C8 1332 aaPredicted RBP16.91■□□□□ 0.3
HMGCS1-204ENST00000507293 ALS2Q96Q42 1657 aa16.91■□□□□ 0.3
HMGCS1-204ENST00000507293 ITSN1Q15811 1721 aa16.9■□□□□ 0.3
HMGCS1-204ENST00000507293 PMFBP1Q8TBY8 1022 aa16.9■□□□□ 0.3
HMGCS1-204ENST00000507293 EIF3AQ14152 1382 aaKnown RBP16.89■□□□□ 0.3
HMGCS1-204ENST00000507293 BRWD3Q6RI45 1802 aa16.89■□□□□ 0.29
HMGCS1-204ENST00000507293 PLEKHG5O94827 1062 aa16.89■□□□□ 0.29
HMGCS1-204ENST00000507293 HAP1P54257 671 aaPredicted RBP16.89■□□□□ 0.29
HMGCS1-204ENST00000507293 CABLES1Q8TDN4 633 aa16.89■□□□□ 0.29
HMGCS1-204ENST00000507293 GJD4Q96KN9 370 aaPredicted RBP16.89■□□□□ 0.29
HMGCS1-204ENST00000507293 ARHGEF10O15013 1369 aa16.89■□□□□ 0.29
HMGCS1-204ENST00000507293 RALGAPBQ86X10 1494 aa16.88■□□□□ 0.29
HMGCS1-204ENST00000507293 KIAA1210Q9ULL0 1709 aa16.88■□□□□ 0.29
HMGCS1-204ENST00000507293 LMOD2Q6P5Q4 547 aa16.88■□□□□ 0.29
HMGCS1-204ENST00000507293 UNC5CLQ8IV45 518 aa16.88■□□□□ 0.29
HMGCS1-204ENST00000507293 STAC3Q96MF2 364 aa16.88■□□□□ 0.29
HMGCS1-204ENST00000507293 PRR36Q9H6K5 1346 aa16.88■□□□□ 0.29
HMGCS1-204ENST00000507293 NRAPQ86VF7 1730 aa16.87■□□□□ 0.29
HMGCS1-204ENST00000507293 CRYBG1Q9Y4K1 1723 aa16.87■□□□□ 0.29
HMGCS1-204ENST00000507293 WASLO00401 505 aaPredicted RBP16.85■□□□□ 0.29
HMGCS1-204ENST00000507293 GPRASP1Q5JY77 1395 aa16.84■□□□□ 0.29
HMGCS1-204ENST00000507293 TOPAZ1Q8N9V7 1692 aa16.84■□□□□ 0.29
HMGCS1-204ENST00000507293 ATP7BP35670 1465 aa16.83■□□□□ 0.28
HMGCS1-204ENST00000507293 COL14A1Q05707 1796 aaKnown RBP16.82■□□□□ 0.28
HMGCS1-204ENST00000507293 VPS72Q15906 364 aa16.8■□□□□ 0.28
HMGCS1-204ENST00000507293 PHRF1Q9P1Y6 1649 aaKnown RBP16.8■□□□□ 0.28
HMGCS1-204ENST00000507293 NGDNQ8NEJ9 315 aaKnown RBP16.79■□□□□ 0.28
HMGCS1-204ENST00000507293 CCDC9Q9Y3X0 531 aaKnown RBP16.79■□□□□ 0.28
HMGCS1-204ENST00000507293 FAM83GA6ND36 823 aa16.78■□□□□ 0.28
HMGCS1-204ENST00000507293 CCDC125Q86Z20 511 aa16.77■□□□□ 0.28
HMGCS1-204ENST00000507293 NUDT16Q96DE0 195 aaKnown RBP16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms