RNA–Protein interactions for RNA: ENST00000506244.5

SNCA-209, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 570 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-209ENST00000506244 AHDC1Q5TGY3 1603 aaPredicted RBP23.97■■□□□ 1.43
SNCA-209ENST00000506244 PHLPP1O60346 1717 aa23.96■■□□□ 1.43
SNCA-209ENST00000506244 ARHGEF28Q8N1W1 1705 aaKnown RBP23.96■■□□□ 1.43
SNCA-209ENST00000506244 C1orf167Q5SNV9 1468 aa23.96■■□□□ 1.43
SNCA-209ENST00000506244 CLSPNQ9HAW4 1339 aa23.96■■□□□ 1.43
SNCA-209ENST00000506244 PRAM1Q96QH2 718 aa23.96■■□□□ 1.43
SNCA-209ENST00000506244 POGKQ9P215 609 aa23.96■■□□□ 1.43
SNCA-209ENST00000506244 TRAK1Q9UPV9 953 aa23.95■■□□□ 1.42
SNCA-209ENST00000506244 TRPM1Q7Z4N2 1603 aa23.95■■□□□ 1.42
SNCA-209ENST00000506244 ADGRB2O60241 1585 aa23.95■■□□□ 1.42
SNCA-209ENST00000506244 BRINP3Q76B58 766 aa23.94■■□□□ 1.42
SNCA-209ENST00000506244 FMN2Q9NZ56 1722 aa23.93■■□□□ 1.42
SNCA-209ENST00000506244 COL16A1Q07092 1604 aaPredicted RBP23.91■■□□□ 1.42
SNCA-209ENST00000506244 NHSL1Q5SYE7 1610 aa23.91■■□□□ 1.42
SNCA-209ENST00000506244 SAFB2Q14151 953 aaKnown RBP eCLIP23.89■■□□□ 1.41
SNCA-209ENST00000506244 EIF3AQ14152 1382 aaKnown RBP23.89■■□□□ 1.41
SNCA-209ENST00000506244 ROCK2O75116 1388 aaKnown RBP23.88■■□□□ 1.41
SNCA-209ENST00000506244 NBPF1Q3BBV0 1214 aa23.87■■□□□ 1.41
SNCA-209ENST00000506244 KIF1AQ12756 1690 aa23.85■■□□□ 1.41
SNCA-209ENST00000506244 JCADQ9P266 1359 aa23.84■■□□□ 1.41
SNCA-209ENST00000506244 ANKARQ7Z5J8 1434 aa23.84■■□□□ 1.41
SNCA-209ENST00000506244 RALGAPBQ86X10 1494 aa23.83■■□□□ 1.41
SNCA-209ENST00000506244 MED1Q15648 1581 aaPredicted RBP23.82■■□□□ 1.4
SNCA-209ENST00000506244 GPRASP1Q5JY77 1395 aa23.82■■□□□ 1.4
SNCA-209ENST00000506244 MINK1Q8N4C8 1332 aaPredicted RBP23.82■■□□□ 1.4
SNCA-209ENST00000506244 TULP4Q9NRJ4 1543 aa23.81■■□□□ 1.4
SNCA-209ENST00000506244 ESCO1Q5FWF5 840 aa23.81■■□□□ 1.4
SNCA-209ENST00000506244 ORAI2Q96SN7 254 aa23.81■■□□□ 1.4
SNCA-209ENST00000506244 SHPRHQ149N8 1683 aa23.8■■□□□ 1.4
SNCA-209ENST00000506244 CCER1Q8TC90 406 aaPredicted RBP23.8■■□□□ 1.4
SNCA-209ENST00000506244 NPHP3Q7Z494 1330 aa23.8■■□□□ 1.4
SNCA-209ENST00000506244 CENPJQ9HC77 1338 aaPredicted RBP23.8■■□□□ 1.4
SNCA-209ENST00000506244 HIRIP3Q9BW71 556 aaPredicted RBP23.79■■□□□ 1.4
SNCA-209ENST00000506244 TIMELESSQ9UNS1 1208 aa23.79■■□□□ 1.4
SNCA-209ENST00000506244 QRICH2Q9H0J4 1663 aa23.79■■□□□ 1.4
SNCA-209ENST00000506244 NUTM2FA1L443 756 aa23.78■■□□□ 1.4
SNCA-209ENST00000506244 NBPF8Q3BBV2 869 aa23.78■■□□□ 1.4
SNCA-209ENST00000506244 WASLO00401 505 aaPredicted RBP23.77■■□□□ 1.4
SNCA-209ENST00000506244 USP32Q8NFA0 1604 aa23.76■■□□□ 1.39
SNCA-209ENST00000506244 LRRC59Q96AG4 307 aaKnown RBP23.75■■□□□ 1.39
SNCA-209ENST00000506244 ITSN1Q15811 1721 aa23.75■■□□□ 1.39
SNCA-209ENST00000506244 DISP3Q9P2K9 1392 aa23.75■■□□□ 1.39
SNCA-209ENST00000506244 SOS2Q07890 1332 aaPredicted RBP23.74■■□□□ 1.39
SNCA-209ENST00000506244 SPATA31A6Q5VVP1 1343 aa23.74■■□□□ 1.39
SNCA-209ENST00000506244 RGPD8O14715 1765 aaPredicted RBP23.73■■□□□ 1.39
SNCA-209ENST00000506244 CARD11Q9BXL7 1154 aa23.73■■□□□ 1.39
SNCA-209ENST00000506244 DDX17Q92841 729 aaKnown RBP23.72■■□□□ 1.39
SNCA-209ENST00000506244 PHF8Q9UPP1 1060 aa23.72■■□□□ 1.39
SNCA-209ENST00000506244 PXDNQ92626 1479 aa23.72■■□□□ 1.39
SNCA-209ENST00000506244 ATP7BP35670 1465 aa23.71■■□□□ 1.39
SNCA-209ENST00000506244 FOXO3O43524 673 aa23.69■■□□□ 1.38
SNCA-209ENST00000506244 PNPLA6Q8IY17 1366 aa23.67■■□□□ 1.38
SNCA-209ENST00000506244 PRR36Q9H6K5 1346 aa23.67■■□□□ 1.38
SNCA-209ENST00000506244 PHF23Q9BUL5 403 aaPredicted RBP23.67■■□□□ 1.38
SNCA-209ENST00000506244 CDK19Q9BWU1 502 aa23.67■■□□□ 1.38
SNCA-209ENST00000506244 TOPAZ1Q8N9V7 1692 aa23.67■■□□□ 1.38
SNCA-209ENST00000506244 SBNO2Q9Y2G9 1366 aa23.66■■□□□ 1.38
SNCA-209ENST00000506244 COL22A1Q8NFW1 1626 aaPredicted RBP23.64■■□□□ 1.38
SNCA-209ENST00000506244 SRPK2P78362 688 aaKnown RBP23.64■■□□□ 1.37
SNCA-209ENST00000506244 PSME1Q06323 249 aa23.64■■□□□ 1.37
SNCA-209ENST00000506244 NUDT16Q96DE0 195 aaKnown RBP23.64■■□□□ 1.37
SNCA-209ENST00000506244 EVC2Q86UK5 1308 aa23.63■■□□□ 1.37
SNCA-209ENST00000506244 XPCQ01831 940 aaPredicted RBP23.62■■□□□ 1.37
SNCA-209ENST00000506244 LRP6O75581 1613 aa23.62■■□□□ 1.37
SNCA-209ENST00000506244 TNS3Q68CZ2 1445 aa23.61■■□□□ 1.37
SNCA-209ENST00000506244 KRT28Q7Z3Y7 464 aa23.61■■□□□ 1.37
SNCA-209ENST00000506244 PMFBP1Q8TBY8 1022 aa23.61■■□□□ 1.37
SNCA-209ENST00000506244 CCDC61Q9Y6R9 512 aa23.61■■□□□ 1.37
SNCA-209ENST00000506244 SBNO1A3KN83 1393 aa23.61■■□□□ 1.37
SNCA-209ENST00000506244 MEX3CQ5U5Q3 659 aaKnown RBP23.6■■□□□ 1.37
SNCA-209ENST00000506244 NGDNQ8NEJ9 315 aaKnown RBP23.59■■□□□ 1.37
SNCA-209ENST00000506244 SPATA31A3Q5VYP0 1347 aa23.59■■□□□ 1.37
SNCA-209ENST00000506244 ARHGEF10O15013 1369 aa23.57■■□□□ 1.36
SNCA-209ENST00000506244 PPIP5K1Q6PFW1 1433 aa23.57■■□□□ 1.36
SNCA-209ENST00000506244 NUTM2BA6NNL0 878 aaPredicted RBP23.56■■□□□ 1.36
SNCA-209ENST00000506244 NUTM2EB1AL46 878 aaPredicted RBP23.56■■□□□ 1.36
SNCA-209ENST00000506244 SLC24A1O60721 1099 aa23.56■■□□□ 1.36
SNCA-209ENST00000506244 NUTM2AQ8IVF1 878 aaPredicted RBP23.56■■□□□ 1.36
SNCA-209ENST00000506244 CABP2Q9NPB3 220 aa23.56■■□□□ 1.36
SNCA-209ENST00000506244 TRPM3Q9HCF6 1732 aaPredicted RBP23.56■■□□□ 1.36
SNCA-209ENST00000506244 POLR3AO14802 1390 aaPredicted RBP23.55■■□□□ 1.36
SNCA-209ENST00000506244 ATAD2Q6PL18 1390 aa23.55■■□□□ 1.36
SNCA-209ENST00000506244 USP47Q96K76 1375 aa23.54■■□□□ 1.36
SNCA-209ENST00000506244 PLEKHG3A1L390 1219 aa23.53■■□□□ 1.36
SNCA-209ENST00000506244 ALS2Q96Q42 1657 aa23.51■■□□□ 1.35
SNCA-209ENST00000506244 ACEP12821 1306 aa23.51■■□□□ 1.35
SNCA-209ENST00000506244 BRD4O60885 1362 aaPredicted RBP23.49■■□□□ 1.35
SNCA-209ENST00000506244 ST20-MTHFSA0A0A6YYL1 179 aa23.48■■□□□ 1.35
SNCA-209ENST00000506244 LMOD2Q6P5Q4 547 aa23.48■■□□□ 1.35
SNCA-209ENST00000506244 ABCA3Q99758 1704 aa23.47■■□□□ 1.35
SNCA-209ENST00000506244 PAK3O75914 559 aaPredicted RBP23.46■■□□□ 1.35
SNCA-209ENST00000506244 HAP1P54257 671 aaPredicted RBP23.46■■□□□ 1.35
SNCA-209ENST00000506244 ZNF772Q68DY9 489 aaPredicted RBP23.46■■□□□ 1.35
SNCA-209ENST00000506244 MARF1Q9Y4F3 1742 aaKnown RBP23.46■■□□□ 1.35
SNCA-209ENST00000506244 ADAMTS2O95450 1211 aa23.45■■□□□ 1.34
SNCA-209ENST00000506244 PUS7Q96PZ0 661 aaKnown RBP23.45■■□□□ 1.34
SNCA-209ENST00000506244 CABP1Q9NZU7 370 aa23.45■■□□□ 1.34
SNCA-209ENST00000506244 C8orf37Q96NL8 207 aa23.44■■□□□ 1.34
SNCA-209ENST00000506244 TESK2Q96S53 571 aa23.44■■□□□ 1.34
SNCA-209ENST00000506244 USP6P35125 1406 aa23.43■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms