RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 ADAMTS2O95450 1211 aa31.31■■■□□ 2.6
SQSTM1-210ENST00000506042 ORAI2Q96SN7 254 aa31.29■■■□□ 2.6
SQSTM1-210ENST00000506042 FOXD1Q16676 465 aa31.28■■■□□ 2.6
SQSTM1-210ENST00000506042 ESCO1Q5FWF5 840 aa31.28■■■□□ 2.6
SQSTM1-210ENST00000506042 RGL3Q3MIN7 710 aa31.25■■■□□ 2.59
SQSTM1-210ENST00000506042 TRPC5Q9UL62 973 aaPredicted RBP31.25■■■□□ 2.59
SQSTM1-210ENST00000506042 USP21Q9UK80 565 aa31.24■■■□□ 2.59
SQSTM1-210ENST00000506042 MPHOSPH9Q99550 1183 aa31.22■■■□□ 2.59
SQSTM1-210ENST00000506042 COL22A1Q8NFW1 1626 aaPredicted RBP31.21■■■□□ 2.59
SQSTM1-210ENST00000506042 TECPR2O15040 1411 aa31.21■■■□□ 2.59
SQSTM1-210ENST00000506042 STK26Q9P289 416 aa31.2■■■□□ 2.59
SQSTM1-210ENST00000506042 RGS12O14924 1447 aa31.2■■■□□ 2.59
SQSTM1-210ENST00000506042 ATAD2Q6PL18 1390 aa31.19■■■□□ 2.58
SQSTM1-210ENST00000506042 KNDC1Q76NI1 1749 aa31.18■■■□□ 2.58
SQSTM1-210ENST00000506042 ADGRF5Q8IZF2 1346 aa31.18■■■□□ 2.58
SQSTM1-210ENST00000506042 IFT172Q9UG01 1749 aa31.18■■■□□ 2.58
SQSTM1-210ENST00000506042 ABCC11Q96J66 1382 aa31.17■■■□□ 2.58
SQSTM1-210ENST00000506042 SPATA31E1Q6ZUB1 1445 aa31.16■■■□□ 2.58
SQSTM1-210ENST00000506042 FNBP4Q8N3X1 1017 aaPredicted RBP31.15■■■□□ 2.58
SQSTM1-210ENST00000506042 KIF1AQ12756 1690 aa31.13■■■□□ 2.57
SQSTM1-210ENST00000506042 FOXO3O43524 673 aa31.13■■■□□ 2.57
SQSTM1-210ENST00000506042 PIK3C2GO75747 1445 aa31.13■■■□□ 2.57
SQSTM1-210ENST00000506042 PXDNQ92626 1479 aa31.1■■■□□ 2.57
SQSTM1-210ENST00000506042 MYOM2P54296 1465 aa31.09■■■□□ 2.57
SQSTM1-210ENST00000506042 YTHDC2Q9H6S0 1430 aaKnown RBP31.09■■■□□ 2.57
SQSTM1-210ENST00000506042 DHX57Q6P158 1386 aaKnown RBP31.09■■■□□ 2.57
SQSTM1-210ENST00000506042 WAPLQ7Z5K2 1190 aa31.09■■■□□ 2.57
SQSTM1-210ENST00000506042 SIRT1Q96EB6 747 aa31.09■■■□□ 2.57
SQSTM1-210ENST00000506042 MARF1Q9Y4F3 1742 aaKnown RBP31.09■■■□□ 2.57
SQSTM1-210ENST00000506042 HAP1P54257 671 aaPredicted RBP31.07■■■□□ 2.56
SQSTM1-210ENST00000506042 FMN2Q9NZ56 1722 aa31.07■■■□□ 2.56
SQSTM1-210ENST00000506042 NUTM2FA1L443 756 aa31.06■■■□□ 2.56
SQSTM1-210ENST00000506042 PSME1Q06323 249 aa31.06■■■□□ 2.56
SQSTM1-210ENST00000506042 TMEM132EQ6IEE7 984 aa31.06■■■□□ 2.56
SQSTM1-210ENST00000506042 ATRNO75882 1429 aa31.06■■■□□ 2.56
SQSTM1-210ENST00000506042 CCDC125Q86Z20 511 aa31.03■■■□□ 2.56
SQSTM1-210ENST00000506042 XPCQ01831 940 aaPredicted RBP31.02■■■□□ 2.56
SQSTM1-210ENST00000506042 C14orf93Q9H972 538 aaKnown RBP31.01■■■□□ 2.55
SQSTM1-210ENST00000506042 SPATA31A3Q5VYP0 1347 aa30.98■■■□□ 2.55
SQSTM1-210ENST00000506042 KRT28Q7Z3Y7 464 aa30.98■■■□□ 2.55
SQSTM1-210ENST00000506042 GJD4Q96KN9 370 aaPredicted RBP30.97■■■□□ 2.55
SQSTM1-210ENST00000506042 TNKS1BP1Q9C0C2 1729 aaKnown RBP30.97■■■□□ 2.55
SQSTM1-210ENST00000506042 PLEKHH1Q9ULM0 1364 aa30.96■■■□□ 2.55
SQSTM1-210ENST00000506042 POGKQ9P215 609 aa30.96■■■□□ 2.55
SQSTM1-210ENST00000506042 PHF8Q9UPP1 1060 aa30.96■■■□□ 2.55
SQSTM1-210ENST00000506042 EIF3AQ14152 1382 aaKnown RBP30.94■■■□□ 2.54
SQSTM1-210ENST00000506042 BCL9LQ86UU0 1499 aa30.94■■■□□ 2.54
SQSTM1-210ENST00000506042 NRXN1Q9ULB1 1477 aa30.94■■■□□ 2.54
SQSTM1-210ENST00000506042 UNC5CLQ8IV45 518 aa30.93■■■□□ 2.54
SQSTM1-210ENST00000506042 ARHGEF10O15013 1369 aa30.92■■■□□ 2.54
SQSTM1-210ENST00000506042 TNS3Q68CZ2 1445 aa30.92■■■□□ 2.54
SQSTM1-210ENST00000506042 ZRANB1Q9UGI0 708 aa30.91■■■□□ 2.54
SQSTM1-210ENST00000506042 CFAP70Q5T0N1 1121 aa30.9■■■□□ 2.54
SQSTM1-210ENST00000506042 STAC3Q96MF2 364 aa30.9■■■□□ 2.54
SQSTM1-210ENST00000506042 PRAM1Q96QH2 718 aa30.9■■■□□ 2.54
SQSTM1-210ENST00000506042 USP32Q8NFA0 1604 aa30.9■■■□□ 2.54
SQSTM1-210ENST00000506042 DLC1Q96QB1 1528 aa30.89■■■□□ 2.54
SQSTM1-210ENST00000506042 LMOD2Q6P5Q4 547 aa30.89■■■□□ 2.54
SQSTM1-210ENST00000506042 ANKARQ7Z5J8 1434 aa30.89■■■□□ 2.53
SQSTM1-210ENST00000506042 SBNO1A3KN83 1393 aa30.88■■■□□ 2.53
SQSTM1-210ENST00000506042 SLIT2O94813 1529 aa30.85■■■□□ 2.53
SQSTM1-210ENST00000506042 SF3B2Q13435 895 aaKnown RBP30.85■■■□□ 2.53
SQSTM1-210ENST00000506042 SAFB2Q14151 953 aaKnown RBP eCLIP30.85■■■□□ 2.53
SQSTM1-210ENST00000506042 RAB3GAP2Q9H2M9 1393 aa30.83■■■□□ 2.53
SQSTM1-210ENST00000506042 CCDC9Q9Y3X0 531 aaKnown RBP30.83■■■□□ 2.53
SQSTM1-210ENST00000506042 RGPD8O14715 1765 aaPredicted RBP30.83■■■□□ 2.53
SQSTM1-210ENST00000506042 GPRASP1Q5JY77 1395 aa30.82■■■□□ 2.52
SQSTM1-210ENST00000506042 RALGAPBQ86X10 1494 aa30.82■■■□□ 2.52
SQSTM1-210ENST00000506042 NWD2Q9ULI1 1742 aa30.81■■■□□ 2.52
SQSTM1-210ENST00000506042 ADGRB2O60241 1585 aa30.8■■■□□ 2.52
SQSTM1-210ENST00000506042 VPS72Q15906 364 aa30.78■■■□□ 2.52
SQSTM1-210ENST00000506042 BLMP54132 1417 aaPredicted RBP30.77■■■□□ 2.52
SQSTM1-210ENST00000506042 TRAK1Q9UPV9 953 aa30.75■■■□□ 2.51
SQSTM1-210ENST00000506042 PLCH1Q4KWH8 1693 aa30.74■■■□□ 2.51
SQSTM1-210ENST00000506042 PMFBP1Q8TBY8 1022 aa30.74■■■□□ 2.51
SQSTM1-210ENST00000506042 DCAF11Q8TEB1 546 aa30.74■■■□□ 2.51
SQSTM1-210ENST00000506042 GLI3P10071 1580 aa30.74■■■□□ 2.51
SQSTM1-210ENST00000506042 A0A0G2JS52 829 aa30.73■■■□□ 2.51
SQSTM1-210ENST00000506042 PLEKHG5O94827 1062 aa30.73■■■□□ 2.51
SQSTM1-210ENST00000506042 MYT1Q01538 1121 aa30.73■■■□□ 2.51
SQSTM1-210ENST00000506042 KDM2AQ9Y2K7 1162 aa30.73■■■□□ 2.51
SQSTM1-210ENST00000506042 CABLES1Q8TDN4 633 aa30.71■■■□□ 2.51
SQSTM1-210ENST00000506042 ABCA3Q99758 1704 aa30.7■■■□□ 2.51
SQSTM1-210ENST00000506042 TULP4Q9NRJ4 1543 aa30.7■■■□□ 2.51
SQSTM1-210ENST00000506042 SEPT12Q8IYM1 358 aa30.7■■■□□ 2.51
SQSTM1-210ENST00000506042 ADGRB1O14514 1584 aa30.7■■■□□ 2.5
SQSTM1-210ENST00000506042 NGDNQ8NEJ9 315 aaKnown RBP30.69■■■□□ 2.5
SQSTM1-210ENST00000506042 MINK1Q8N4C8 1332 aaPredicted RBP30.69■■■□□ 2.5
SQSTM1-210ENST00000506042 HRCP23327 699 aa30.68■■■□□ 2.5
SQSTM1-210ENST00000506042 HIRIP3Q9BW71 556 aaPredicted RBP30.67■■■□□ 2.5
SQSTM1-210ENST00000506042 WASLO00401 505 aaPredicted RBP30.66■■■□□ 2.5
SQSTM1-210ENST00000506042 KRT27Q7Z3Y8 459 aa30.66■■■□□ 2.5
SQSTM1-210ENST00000506042 ITSN1Q15811 1721 aa30.66■■■□□ 2.5
SQSTM1-210ENST00000506042 COL14A1Q05707 1796 aaKnown RBP30.64■■■□□ 2.49
SQSTM1-210ENST00000506042 PAK3O75914 559 aaPredicted RBP30.63■■■□□ 2.49
SQSTM1-210ENST00000506042 BRWD3Q6RI45 1802 aa30.62■■■□□ 2.49
SQSTM1-210ENST00000506042 ONECUT3O60422 494 aaPredicted RBP30.62■■■□□ 2.49
SQSTM1-210ENST00000506042 TRPM3Q9HCF6 1732 aaPredicted RBP30.61■■■□□ 2.49
SQSTM1-210ENST00000506042 FAM83GA6ND36 823 aa30.6■■■□□ 2.49
SQSTM1-210ENST00000506042 BTG4Q9NY30 223 aa30.6■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms