RNA–Protein interactions for RNA: ENST00000505937.2

PCDH1-205, Transcript of protocadherin 1, humanhuman

TSL 5

Gene PCDH1, Length 825 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-205ENST00000505937 DLC1Q96QB1 1528 aa22.26■■□□□ 1.15
PCDH1-205ENST00000505937 C1orf167Q5SNV9 1468 aa22.24■■□□□ 1.15
PCDH1-205ENST00000505937 SAFB2Q14151 953 aaKnown RBP eCLIP22.24■■□□□ 1.15
PCDH1-205ENST00000505937 CDC42BPGQ6DT37 1551 aa22.24■■□□□ 1.15
PCDH1-205ENST00000505937 DISP3Q9P2K9 1392 aa22.23■■□□□ 1.15
PCDH1-205ENST00000505937 TONSLQ96HA7 1378 aa22.22■■□□□ 1.15
PCDH1-205ENST00000505937 AHDC1Q5TGY3 1603 aaPredicted RBP22.2■■□□□ 1.14
PCDH1-205ENST00000505937 PHLPP1O60346 1717 aa22.2■■□□□ 1.14
PCDH1-205ENST00000505937 JCADQ9P266 1359 aa22.19■■□□□ 1.14
PCDH1-205ENST00000505937 KIAA1210Q9ULL0 1709 aa22.18■■□□□ 1.14
PCDH1-205ENST00000505937 ESCO1Q5FWF5 840 aa22.18■■□□□ 1.14
PCDH1-205ENST00000505937 NUTM2FA1L443 756 aa22.17■■□□□ 1.14
PCDH1-205ENST00000505937 NBPF1Q3BBV0 1214 aa22.17■■□□□ 1.14
PCDH1-205ENST00000505937 ORAI2Q96SN7 254 aa22.17■■□□□ 1.14
PCDH1-205ENST00000505937 MINK1Q8N4C8 1332 aaPredicted RBP22.14■■□□□ 1.14
PCDH1-205ENST00000505937 LRRC59Q96AG4 307 aaKnown RBP22.14■■□□□ 1.13
PCDH1-205ENST00000505937 PHF23Q9BUL5 403 aaPredicted RBP22.14■■□□□ 1.13
PCDH1-205ENST00000505937 COL16A1Q07092 1604 aaPredicted RBP22.13■■□□□ 1.13
PCDH1-205ENST00000505937 EIF3AQ14152 1382 aaKnown RBP22.13■■□□□ 1.13
PCDH1-205ENST00000505937 HIRIP3Q9BW71 556 aaPredicted RBP22.13■■□□□ 1.13
PCDH1-205ENST00000505937 MED1Q15648 1581 aaPredicted RBP22.12■■□□□ 1.13
PCDH1-205ENST00000505937 NPHP3Q7Z494 1330 aa22.12■■□□□ 1.13
PCDH1-205ENST00000505937 ROCK2O75116 1388 aaKnown RBP22.12■■□□□ 1.13
PCDH1-205ENST00000505937 DDX17Q92841 729 aaKnown RBP22.11■■□□□ 1.13
PCDH1-205ENST00000505937 CLSPNQ9HAW4 1339 aa22.1■■□□□ 1.13
PCDH1-205ENST00000505937 NHSL1Q5SYE7 1610 aa22.09■■□□□ 1.13
PCDH1-205ENST00000505937 SPATA31A6Q5VVP1 1343 aa22.09■■□□□ 1.13
PCDH1-205ENST00000505937 ADGRB2O60241 1585 aa22.09■■□□□ 1.13
PCDH1-205ENST00000505937 WASLO00401 505 aaPredicted RBP22.09■■□□□ 1.13
PCDH1-205ENST00000505937 FMN2Q9NZ56 1722 aa22.09■■□□□ 1.13
PCDH1-205ENST00000505937 ANKARQ7Z5J8 1434 aa22.08■■□□□ 1.13
PCDH1-205ENST00000505937 FOXO3O43524 673 aa22.08■■□□□ 1.13
PCDH1-205ENST00000505937 SOS2Q07890 1332 aaPredicted RBP22.07■■□□□ 1.12
PCDH1-205ENST00000505937 CENPJQ9HC77 1338 aaPredicted RBP22.07■■□□□ 1.12
PCDH1-205ENST00000505937 ARHGEF28Q8N1W1 1705 aaKnown RBP22.07■■□□□ 1.12
PCDH1-205ENST00000505937 PHF8Q9UPP1 1060 aa22.07■■□□□ 1.12
PCDH1-205ENST00000505937 NBPF8Q3BBV2 869 aa22.06■■□□□ 1.12
PCDH1-205ENST00000505937 TRPM1Q7Z4N2 1603 aa22.04■■□□□ 1.12
PCDH1-205ENST00000505937 MEX3CQ5U5Q3 659 aaKnown RBP22.03■■□□□ 1.12
PCDH1-205ENST00000505937 CCER1Q8TC90 406 aaPredicted RBP22.03■■□□□ 1.12
PCDH1-205ENST00000505937 KIF1AQ12756 1690 aa22.01■■□□□ 1.11
PCDH1-205ENST00000505937 TULP4Q9NRJ4 1543 aa22.01■■□□□ 1.11
PCDH1-205ENST00000505937 XPCQ01831 940 aaPredicted RBP22.01■■□□□ 1.11
PCDH1-205ENST00000505937 PSME1Q06323 249 aa22.01■■□□□ 1.11
PCDH1-205ENST00000505937 CARD11Q9BXL7 1154 aa22.01■■□□□ 1.11
PCDH1-205ENST00000505937 TIMELESSQ9UNS1 1208 aa22.01■■□□□ 1.11
PCDH1-205ENST00000505937 SHPRHQ149N8 1683 aa22.01■■□□□ 1.11
PCDH1-205ENST00000505937 GPRASP1Q5JY77 1395 aa22■■□□□ 1.11
PCDH1-205ENST00000505937 PNPLA6Q8IY17 1366 aa22■■□□□ 1.11
PCDH1-205ENST00000505937 NUTM2BA6NNL0 878 aaPredicted RBP22■■□□□ 1.11
PCDH1-205ENST00000505937 NUTM2EB1AL46 878 aaPredicted RBP22■■□□□ 1.11
PCDH1-205ENST00000505937 NUTM2AQ8IVF1 878 aaPredicted RBP22■■□□□ 1.11
PCDH1-205ENST00000505937 CDK19Q9BWU1 502 aa22■■□□□ 1.11
PCDH1-205ENST00000505937 KRT28Q7Z3Y7 464 aa21.99■■□□□ 1.11
PCDH1-205ENST00000505937 RALGAPBQ86X10 1494 aa21.98■■□□□ 1.11
PCDH1-205ENST00000505937 PMFBP1Q8TBY8 1022 aa21.98■■□□□ 1.11
PCDH1-205ENST00000505937 NUDT16Q96DE0 195 aaKnown RBP21.98■■□□□ 1.11
PCDH1-205ENST00000505937 PRR36Q9H6K5 1346 aa21.98■■□□□ 1.11
PCDH1-205ENST00000505937 PXDNQ92626 1479 aa21.97■■□□□ 1.11
PCDH1-205ENST00000505937 SRPK2P78362 688 aaKnown RBP21.97■■□□□ 1.11
PCDH1-205ENST00000505937 NGDNQ8NEJ9 315 aaKnown RBP21.96■■□□□ 1.11
PCDH1-205ENST00000505937 CCDC61Q9Y6R9 512 aa21.95■■□□□ 1.1
PCDH1-205ENST00000505937 EVC2Q86UK5 1308 aa21.94■■□□□ 1.1
PCDH1-205ENST00000505937 LRP6O75581 1613 aa21.93■■□□□ 1.1
PCDH1-205ENST00000505937 ATP7BP35670 1465 aa21.93■■□□□ 1.1
PCDH1-205ENST00000505937 SPATA31A3Q5VYP0 1347 aa21.93■■□□□ 1.1
PCDH1-205ENST00000505937 USP32Q8NFA0 1604 aa21.93■■□□□ 1.1
PCDH1-205ENST00000505937 RGPD8O14715 1765 aaPredicted RBP21.92■■□□□ 1.1
PCDH1-205ENST00000505937 SBNO1A3KN83 1393 aa21.92■■□□□ 1.1
PCDH1-205ENST00000505937 LMOD2Q6P5Q4 547 aa21.91■■□□□ 1.1
PCDH1-205ENST00000505937 QRICH2Q9H0J4 1663 aa21.91■■□□□ 1.1
PCDH1-205ENST00000505937 TNS3Q68CZ2 1445 aa21.9■■□□□ 1.1
PCDH1-205ENST00000505937 CABP2Q9NPB3 220 aa21.9■■□□□ 1.1
PCDH1-205ENST00000505937 ARHGEF10O15013 1369 aa21.89■■□□□ 1.1
PCDH1-205ENST00000505937 ILDR2Q71H61 639 aa21.89■■□□□ 1.09
PCDH1-205ENST00000505937 ADAMTS2O95450 1211 aa21.88■■□□□ 1.09
PCDH1-205ENST00000505937 ZNF772Q68DY9 489 aaPredicted RBP21.88■■□□□ 1.09
PCDH1-205ENST00000505937 ITSN1Q15811 1721 aa21.88■■□□□ 1.09
PCDH1-205ENST00000505937 C8orf37Q96NL8 207 aa21.87■■□□□ 1.09
PCDH1-205ENST00000505937 RGS17Q9UGC6 210 aaPredicted RBP21.87■■□□□ 1.09
PCDH1-205ENST00000505937 SBNO2Q9Y2G9 1366 aa21.87■■□□□ 1.09
PCDH1-205ENST00000505937 PLEKHG3A1L390 1219 aa21.86■■□□□ 1.09
PCDH1-205ENST00000505937 HAP1P54257 671 aaPredicted RBP21.86■■□□□ 1.09
PCDH1-205ENST00000505937 PAK3O75914 559 aaPredicted RBP21.85■■□□□ 1.09
PCDH1-205ENST00000505937 COL22A1Q8NFW1 1626 aaPredicted RBP21.84■■□□□ 1.09
PCDH1-205ENST00000505937 ACEP12821 1306 aa21.84■■□□□ 1.09
PCDH1-205ENST00000505937 PPIP5K1Q6PFW1 1433 aa21.84■■□□□ 1.09
PCDH1-205ENST00000505937 SLC24A1O60721 1099 aa21.84■■□□□ 1.09
PCDH1-205ENST00000505937 NGLY1Q96IV0 654 aa21.84■■□□□ 1.09
PCDH1-205ENST00000505937 POLR3AO14802 1390 aaPredicted RBP21.83■■□□□ 1.08
PCDH1-205ENST00000505937 AFF2P51816 1311 aa21.82■■□□□ 1.08
PCDH1-205ENST00000505937 ATAD2Q6PL18 1390 aa21.82■■□□□ 1.08
PCDH1-205ENST00000505937 CABP1Q9NZU7 370 aa21.81■■□□□ 1.08
PCDH1-205ENST00000505937 PLEKHG5O94827 1062 aa21.8■■□□□ 1.08
PCDH1-205ENST00000505937 POTEAQ6S8J7 498 aa21.8■■□□□ 1.08
PCDH1-205ENST00000505937 TOPAZ1Q8N9V7 1692 aa21.79■■□□□ 1.08
PCDH1-205ENST00000505937 ST20-MTHFSA0A0A6YYL1 179 aa21.79■■□□□ 1.08
PCDH1-205ENST00000505937 USP47Q96K76 1375 aa21.78■■□□□ 1.08
PCDH1-205ENST00000505937 CABLES1Q8TDN4 633 aa21.77■■□□□ 1.08
PCDH1-205ENST00000505937 BRD4O60885 1362 aaPredicted RBP21.76■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms