RNA–Protein interactions for RNA: ENST00000505226.1

UBE3D-206, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 3,255 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-206ENST00000505226 NINLQ9Y2I6 1382 aa15.26■□□□□ 0.03
UBE3D-206ENST00000505226 MROH2AA6NES4 1674 aa15.26■□□□□ 0.03
UBE3D-206ENST00000505226 MORC1Q86VD1 984 aa15.26■□□□□ 0.03
UBE3D-206ENST00000505226 RUNDC1Q96C34 613 aa15.26■□□□□ 0.03
UBE3D-206ENST00000505226 PDZRN3Q9UPQ7 1066 aa15.25■□□□□ 0.03
UBE3D-206ENST00000505226 NEURL4Q96JN8 1562 aa15.25■□□□□ 0.03
UBE3D-206ENST00000505226 ATP7AQ04656 1500 aa15.25■□□□□ 0.03
UBE3D-206ENST00000505226 KANK1Q14678 1352 aa15.25■□□□□ 0.03
UBE3D-206ENST00000505226 IFT172Q9UG01 1749 aa15.25■□□□□ 0.03
UBE3D-206ENST00000505226 TRAK1Q9UPV9 953 aa15.25■□□□□ 0.03
UBE3D-206ENST00000505226 NRXN1Q9ULB1 1477 aa15.24■□□□□ 0.03
UBE3D-206ENST00000505226 MYO3AQ8NEV4 1616 aa15.24■□□□□ 0.03
UBE3D-206ENST00000505226 INO80Q9ULG1 1556 aaPredicted RBP15.24■□□□□ 0.03
UBE3D-206ENST00000505226 UHRF1BP1LA0JNW5 1464 aa15.23■□□□□ 0.03
UBE3D-206ENST00000505226 SBNO2Q9Y2G9 1366 aa15.23■□□□□ 0.03
UBE3D-206ENST00000505226 MTHFSP49914 203 aa15.23■□□□□ 0.03
UBE3D-206ENST00000505226 TBC1D32Q96NH3 1257 aa15.23■□□□□ 0.03
UBE3D-206ENST00000505226 NOS1P29475 1434 aa15.22■□□□□ 0.03
UBE3D-206ENST00000505226 TBC1D2Q9BYX2 928 aa15.22■□□□□ 0.03
UBE3D-206ENST00000505226 PMFBP1Q8TBY8 1022 aa15.22■□□□□ 0.03
UBE3D-206ENST00000505226 KIF1BO60333 1816 aa15.22■□□□□ 0.03
UBE3D-206ENST00000505226 TMEM132EQ6IEE7 984 aa15.21■□□□□ 0.03
UBE3D-206ENST00000505226 WDR63Q8IWG1 891 aa15.21■□□□□ 0.03
UBE3D-206ENST00000505226 BECN1Q14457 450 aa15.21■□□□□ 0.02
UBE3D-206ENST00000505226 ARAP3Q8WWN8 1544 aa15.2■□□□□ 0.02
UBE3D-206ENST00000505226 FANCAO15360 1455 aa15.2■□□□□ 0.02
UBE3D-206ENST00000505226 ZNF518AQ6AHZ1 1483 aa15.2■□□□□ 0.02
UBE3D-206ENST00000505226 PPRC1Q5VV67 1664 aaKnown RBP15.19■□□□□ 0.02
UBE3D-206ENST00000505226 EFCAB6Q5THR3 1501 aa15.19■□□□□ 0.02
UBE3D-206ENST00000505226 CHGAP10645 457 aaKnown RBP15.18■□□□□ 0.02
UBE3D-206ENST00000505226 SPRYD3Q8NCJ5 442 aa15.18■□□□□ 0.02
UBE3D-206ENST00000505226 ZC3H13Q5T200 1668 aaKnown RBP15.18■□□□□ 0.02
UBE3D-206ENST00000505226 CCDC27Q2M243 656 aa15.18■□□□□ 0.02
UBE3D-206ENST00000505226 ABCA9Q8IUA7 1624 aa15.17■□□□□ 0.02
UBE3D-206ENST00000505226 TSR2Q969E8 191 aaKnown RBP15.17■□□□□ 0.02
UBE3D-206ENST00000505226 C14orf93Q9H972 538 aaKnown RBP15.17■□□□□ 0.02
UBE3D-206ENST00000505226 QRICH2Q9H0J4 1663 aa15.17■□□□□ 0.02
UBE3D-206ENST00000505226 ADGRB1O14514 1584 aa15.17■□□□□ 0.02
UBE3D-206ENST00000505226 MVPQ14764 893 aaKnown RBP15.16■□□□□ 0.02
UBE3D-206ENST00000505226 FAM43AQ8N2R8 423 aa15.16■□□□□ 0.02
UBE3D-206ENST00000505226 RWDD1Q9H446 243 aaPredicted RBP15.16■□□□□ 0.02
UBE3D-206ENST00000505226 SETBP1Q9Y6X0 1596 aa15.16■□□□□ 0.02
UBE3D-206ENST00000505226 AAMPQ13685 434 aa15.16■□□□□ 0.02
UBE3D-206ENST00000505226 ADGRB3O60242 1522 aa15.15■□□□□ 0.02
UBE3D-206ENST00000505226 CFAP65Q6ZU64 1925 aaKnown RBP15.15■□□□□ 0.02
UBE3D-206ENST00000505226 ADGRL1O94910 1474 aa15.15■□□□□ 0.02
UBE3D-206ENST00000505226 ZMYM3Q14202 1370 aa15.14■□□□□ 0.01
UBE3D-206ENST00000505226 U2AF1L5P0DN76 240 aaPredicted RBP15.14■□□□□ 0.01
UBE3D-206ENST00000505226 U2AF1Q01081 240 aaKnown RBP eCLIP15.14■□□□□ 0.01
UBE3D-206ENST00000505226 UPF2Q9HAU5 1272 aaKnown RBP15.14■□□□□ 0.01
UBE3D-206ENST00000505226 NUTM2DQ5VT03 806 aaPredicted RBP15.12■□□□□ 0.01
UBE3D-206ENST00000505226 RRAGDQ9NQL2 400 aaPredicted RBP15.12■□□□□ 0.01
UBE3D-206ENST00000505226 ZKSCAN2Q63HK3 967 aa15.12■□□□□ 0.01
UBE3D-206ENST00000505226 DZIP1LQ8IYY4 767 aaKnown RBP15.12■□□□□ 0.01
UBE3D-206ENST00000505226 MYH16Q9H6N6 1097 aa15.12■□□□□ 0.01
UBE3D-206ENST00000505226 KIDINS220Q9ULH0 1771 aa15.12■□□□□ 0.01
UBE3D-206ENST00000505226 USP32Q8NFA0 1604 aa15.12■□□□□ 0.01
UBE3D-206ENST00000505226 TRIM27P14373 513 aa15.12■□□□□ 0.01
UBE3D-206ENST00000505226 PPLO60437 1756 aa15.11■□□□□ 0.01
UBE3D-206ENST00000505226 CD109Q6YHK3 1445 aa15.11■□□□□ 0.01
UBE3D-206ENST00000505226 EXOSC9Q06265 439 aaKnown RBP15.11■□□□□ 0.01
UBE3D-206ENST00000505226 CFAP53Q96M91 514 aa15.11■□□□□ 0.01
UBE3D-206ENST00000505226 ARXQ96QS3 562 aa15.11■□□□□ 0.01
UBE3D-206ENST00000505226 NPATQ14207 1427 aa15.11■□□□□ 0.01
UBE3D-206ENST00000505226 ADGRB2O60241 1585 aa15.1■□□□□ 0.01
UBE3D-206ENST00000505226 MFAP1P55081 439 aaKnown RBP15.1■□□□□ 0.01
UBE3D-206ENST00000505226 SSH1Q8WYL5 1049 aa15.1■□□□□ 0.01
UBE3D-206ENST00000505226 PLEKHF1Q96S99 279 aa15.1■□□□□ 0.01
UBE3D-206ENST00000505226 TRIM35Q9UPQ4 493 aa15.1■□□□□ 0.01
UBE3D-206ENST00000505226 FTSJ3Q8IY81 847 aaKnown RBP15.1■□□□□ 0.01
UBE3D-206ENST00000505226 C22orf23Q9BZE7 217 aa15.1■□□□□ 0.01
UBE3D-206ENST00000505226 CABP2Q9NPB3 220 aa15.1■□□□□ 0.01
UBE3D-206ENST00000505226 LMTK2Q8IWU2 1503 aa15.09■□□□□ 0.01
UBE3D-206ENST00000505226 TULP4Q9NRJ4 1543 aa15.09■□□□□ 0.01
UBE3D-206ENST00000505226 XRCC6P12956 609 aaKnown RBP eCLIP15.09■□□□□ 0.01
UBE3D-206ENST00000505226 EIF5BO60841 1220 aaKnown RBP15.09■□□□□ 0.01
UBE3D-206ENST00000505226 MCM4P33991 863 aa15.09■□□□□ 0.01
UBE3D-206ENST00000505226 SMC4Q9NTJ3 1288 aa15.09■□□□□ 0.01
UBE3D-206ENST00000505226 GZF1Q9H116 711 aaPredicted RBP15.08■□□□□ 0
UBE3D-206ENST00000505226 ANKRD36BQ8N2N9 1353 aa15.07■□□□□ 0
UBE3D-206ENST00000505226 FSD2A1L4K1 749 aa15.07■□□□□ 0
UBE3D-206ENST00000505226 HDAC1Q13547 482 aaPredicted RBP15.07■□□□□ 0
UBE3D-206ENST00000505226 SAFB2Q14151 953 aaKnown RBP eCLIP15.07■□□□□ 0
UBE3D-206ENST00000505226 PANK2Q9BZ23 570 aa15.07■□□□□ 0
UBE3D-206ENST00000505226 TMPOP42166 694 aaKnown RBP15.07■□□□□ 0
UBE3D-206ENST00000505226 NCBP3Q53F19 620 aaKnown RBP15.07■□□□□ 0
UBE3D-206ENST00000505226 SENP3Q9H4L4 574 aaPredicted RBP15.07■□□□□ 0
UBE3D-206ENST00000505226 NOB1Q9ULX3 412 aaKnown RBP15.07■□□□□ 0
UBE3D-206ENST00000505226 GGT6Q6P531 493 aa15.06■□□□□ 0
UBE3D-206ENST00000505226 ITPRIPQ8IWB1 547 aa15.06■□□□□ 0
UBE3D-206ENST00000505226 U2SURPO15042 1029 aaKnown RBP15.05■□□□□ 0
UBE3D-206ENST00000505226 ZNF692Q9BU19 519 aaPredicted RBP15.05■□□□□ 0
UBE3D-206ENST00000505226 ATF7IPQ6VMQ6 1270 aa15.05■□□□□ -0
UBE3D-206ENST00000505226 TMEM57Q8N5G2 664 aa15.05■□□□□ -0
UBE3D-206ENST00000505226 GGNBP2Q9H3C7 697 aa15.05■□□□□ -0
UBE3D-206ENST00000505226 GLI2P10070 1586 aa15.05■□□□□ -0
UBE3D-206ENST00000505226 L1TD1Q5T7N2 865 aaKnown RBP15.05■□□□□ -0
UBE3D-206ENST00000505226 SMC5Q8IY18 1101 aa15.05■□□□□ -0
UBE3D-206ENST00000505226 EVC2Q86UK5 1308 aa15.04■□□□□ -0
UBE3D-206ENST00000505226 ZBTB40Q9NUA8 1239 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms