RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 NHSL1Q5SYE7 1610 aa26.36■■□□□ 1.81
SQSTM1-209ENST00000504627 ABCC11Q96J66 1382 aa26.34■■□□□ 1.81
SQSTM1-209ENST00000504627 TECPR2O15040 1411 aa26.34■■□□□ 1.81
SQSTM1-209ENST00000504627 C14orf93Q9H972 538 aaKnown RBP26.33■■□□□ 1.81
SQSTM1-209ENST00000504627 CFAP70Q5T0N1 1121 aa26.32■■□□□ 1.8
SQSTM1-209ENST00000504627 YTHDC2Q9H6S0 1430 aaKnown RBP26.31■■□□□ 1.8
SQSTM1-209ENST00000504627 MYOM2P54296 1465 aa26.31■■□□□ 1.8
SQSTM1-209ENST00000504627 ESCO1Q5FWF5 840 aa26.31■■□□□ 1.8
SQSTM1-209ENST00000504627 ZNF772Q68DY9 489 aaPredicted RBP26.3■■□□□ 1.8
SQSTM1-209ENST00000504627 DHX57Q6P158 1386 aaKnown RBP26.3■■□□□ 1.8
SQSTM1-209ENST00000504627 NRXN1Q9ULB1 1477 aa26.29■■□□□ 1.8
SQSTM1-209ENST00000504627 CDC42BPGQ6DT37 1551 aa26.29■■□□□ 1.8
SQSTM1-209ENST00000504627 NUTM2FA1L443 756 aa26.28■■□□□ 1.8
SQSTM1-209ENST00000504627 PLEKHH1Q9ULM0 1364 aa26.28■■□□□ 1.8
SQSTM1-209ENST00000504627 KDM2AQ9Y2K7 1162 aa26.27■■□□□ 1.8
SQSTM1-209ENST00000504627 PNPLA6Q8IY17 1366 aa26.27■■□□□ 1.8
SQSTM1-209ENST00000504627 KNDC1Q76NI1 1749 aa26.26■■□□□ 1.79
SQSTM1-209ENST00000504627 DCAF11Q8TEB1 546 aa26.26■■□□□ 1.79
SQSTM1-209ENST00000504627 SOS2Q07890 1332 aaPredicted RBP26.25■■□□□ 1.79
SQSTM1-209ENST00000504627 SIRT1Q96EB6 747 aa26.25■■□□□ 1.79
SQSTM1-209ENST00000504627 LAMC1P11047 1609 aa26.24■■□□□ 1.79
SQSTM1-209ENST00000504627 NPHP3Q7Z494 1330 aa26.23■■□□□ 1.79
SQSTM1-209ENST00000504627 FOXO3O43524 673 aa26.21■■□□□ 1.79
SQSTM1-209ENST00000504627 C8orf37Q96NL8 207 aa26.21■■□□□ 1.79
SQSTM1-209ENST00000504627 AFF2P51816 1311 aa26.2■■□□□ 1.79
SQSTM1-209ENST00000504627 SAFB2Q14151 953 aaKnown RBP eCLIP26.2■■□□□ 1.78
SQSTM1-209ENST00000504627 PRAM1Q96QH2 718 aa26.2■■□□□ 1.78
SQSTM1-209ENST00000504627 POGKQ9P215 609 aa26.2■■□□□ 1.78
SQSTM1-209ENST00000504627 STAC3Q96MF2 364 aa26.19■■□□□ 1.78
SQSTM1-209ENST00000504627 ADAMTS2O95450 1211 aa26.18■■□□□ 1.78
SQSTM1-209ENST00000504627 XPCQ01831 940 aaPredicted RBP26.17■■□□□ 1.78
SQSTM1-209ENST00000504627 RXRBP28702 533 aa26.16■■□□□ 1.78
SQSTM1-209ENST00000504627 TRAK1Q9UPV9 953 aa26.15■■□□□ 1.78
SQSTM1-209ENST00000504627 NGLY1Q96IV0 654 aa26.14■■□□□ 1.78
SQSTM1-209ENST00000504627 FMN2Q9NZ56 1722 aa26.12■■□□□ 1.77
SQSTM1-209ENST00000504627 DLC1Q96QB1 1528 aa26.11■■□□□ 1.77
SQSTM1-209ENST00000504627 PXDNQ92626 1479 aa26.11■■□□□ 1.77
SQSTM1-209ENST00000504627 ADGRB1O14514 1584 aa26.1■■□□□ 1.77
SQSTM1-209ENST00000504627 QTRT2Q9H974 415 aaKnown RBP26.09■■□□□ 1.77
SQSTM1-209ENST00000504627 PHF8Q9UPP1 1060 aa26.08■■□□□ 1.77
SQSTM1-209ENST00000504627 KRT28Q7Z3Y7 464 aa26.07■■□□□ 1.76
SQSTM1-209ENST00000504627 HIRIP3Q9BW71 556 aaPredicted RBP26.06■■□□□ 1.76
SQSTM1-209ENST00000504627 KIF1AQ12756 1690 aa26.06■■□□□ 1.76
SQSTM1-209ENST00000504627 MINK1Q8N4C8 1332 aaPredicted RBP26.05■■□□□ 1.76
SQSTM1-209ENST00000504627 COL22A1Q8NFW1 1626 aaPredicted RBP26.04■■□□□ 1.76
SQSTM1-209ENST00000504627 PSME1Q06323 249 aa26.04■■□□□ 1.76
SQSTM1-209ENST00000504627 RBM6P78332 1123 aaKnown RBP26.03■■□□□ 1.76
SQSTM1-209ENST00000504627 USP21Q9UK80 565 aa26.03■■□□□ 1.76
SQSTM1-209ENST00000504627 SPATA31A3Q5VYP0 1347 aa26.02■■□□□ 1.76
SQSTM1-209ENST00000504627 PMFBP1Q8TBY8 1022 aa26.01■■□□□ 1.75
SQSTM1-209ENST00000504627 RGPD8O14715 1765 aaPredicted RBP26■■□□□ 1.75
SQSTM1-209ENST00000504627 ANKARQ7Z5J8 1434 aa25.99■■□□□ 1.75
SQSTM1-209ENST00000504627 FNBP4Q8N3X1 1017 aaPredicted RBP25.99■■□□□ 1.75
SQSTM1-209ENST00000504627 CDK12Q9NYV4 1490 aaPredicted RBP25.98■■□□□ 1.75
SQSTM1-209ENST00000504627 EIF3AQ14152 1382 aaKnown RBP25.98■■□□□ 1.75
SQSTM1-209ENST00000504627 HAP1P54257 671 aaPredicted RBP25.98■■□□□ 1.75
SQSTM1-209ENST00000504627 LMOD2Q6P5Q4 547 aa25.98■■□□□ 1.75
SQSTM1-209ENST00000504627 TRPC5Q9UL62 973 aaPredicted RBP25.98■■□□□ 1.75
SQSTM1-209ENST00000504627 ADGRB2O60241 1585 aa25.98■■□□□ 1.75
SQSTM1-209ENST00000504627 WASLO00401 505 aaPredicted RBP25.97■■□□□ 1.75
SQSTM1-209ENST00000504627 PLEKHG5O94827 1062 aa25.95■■□□□ 1.74
SQSTM1-209ENST00000504627 TNS3Q68CZ2 1445 aa25.95■■□□□ 1.74
SQSTM1-209ENST00000504627 SBNO1A3KN83 1393 aa25.93■■□□□ 1.74
SQSTM1-209ENST00000504627 USP32Q8NFA0 1604 aa25.92■■□□□ 1.74
SQSTM1-209ENST00000504627 RGS12O14924 1447 aa25.91■■□□□ 1.74
SQSTM1-209ENST00000504627 UPF1Q92900 1129 aaKnown RBP eCLIP25.91■■□□□ 1.74
SQSTM1-209ENST00000504627 TULP4Q9NRJ4 1543 aa25.91■■□□□ 1.74
SQSTM1-209ENST00000504627 GPRASP1Q5JY77 1395 aa25.91■■□□□ 1.74
SQSTM1-209ENST00000504627 PRR36Q9H6K5 1346 aa25.9■■□□□ 1.74
SQSTM1-209ENST00000504627 ARHGEF10O15013 1369 aa25.9■■□□□ 1.74
SQSTM1-209ENST00000504627 ARHGEF28Q8N1W1 1705 aaKnown RBP25.89■■□□□ 1.74
SQSTM1-209ENST00000504627 NBPF1Q3BBV0 1214 aa25.89■■□□□ 1.74
SQSTM1-209ENST00000504627 NGDNQ8NEJ9 315 aaKnown RBP25.89■■□□□ 1.74
SQSTM1-209ENST00000504627 CABLES1Q8TDN4 633 aa25.89■■□□□ 1.74
SQSTM1-209ENST00000504627 ATRNO75882 1429 aa25.88■■□□□ 1.73
SQSTM1-209ENST00000504627 KIAA1210Q9ULL0 1709 aa25.87■■□□□ 1.73
SQSTM1-209ENST00000504627 MARF1Q9Y4F3 1742 aaKnown RBP25.87■■□□□ 1.73
SQSTM1-209ENST00000504627 BCL9LQ86UU0 1499 aa25.86■■□□□ 1.73
SQSTM1-209ENST00000504627 NEUROD1Q13562 356 aa25.86■■□□□ 1.73
SQSTM1-209ENST00000504627 L3MBTL2Q969R5 705 aa25.86■■□□□ 1.73
SQSTM1-209ENST00000504627 SIN3AQ96ST3 1273 aa25.86■■□□□ 1.73
SQSTM1-209ENST00000504627 NUDT16Q96DE0 195 aaKnown RBP25.85■■□□□ 1.73
SQSTM1-209ENST00000504627 CDK19Q9BWU1 502 aa25.85■■□□□ 1.73
SQSTM1-209ENST00000504627 UNC5CLQ8IV45 518 aa25.84■■□□□ 1.73
SQSTM1-209ENST00000504627 CCER1Q8TC90 406 aaPredicted RBP25.84■■□□□ 1.73
SQSTM1-209ENST00000504627 PAK3O75914 559 aaPredicted RBP25.83■■□□□ 1.73
SQSTM1-209ENST00000504627 GJD4Q96KN9 370 aaPredicted RBP25.82■■□□□ 1.72
SQSTM1-209ENST00000504627 CLSPNQ9HAW4 1339 aa25.81■■□□□ 1.72
SQSTM1-209ENST00000504627 ATP7BP35670 1465 aa25.79■■□□□ 1.72
SQSTM1-209ENST00000504627 SLIT2O94813 1529 aa25.79■■□□□ 1.72
SQSTM1-209ENST00000504627 CENPJQ9HC77 1338 aaPredicted RBP25.79■■□□□ 1.72
SQSTM1-209ENST00000504627 CCDC61Q9Y6R9 512 aa25.77■■□□□ 1.72
SQSTM1-209ENST00000504627 SRPK2P78362 688 aaKnown RBP25.76■■□□□ 1.71
SQSTM1-209ENST00000504627 ATAD2Q6PL18 1390 aa25.76■■□□□ 1.71
SQSTM1-209ENST00000504627 ITSN1Q15811 1721 aa25.76■■□□□ 1.71
SQSTM1-209ENST00000504627 TRPM3Q9HCF6 1732 aaPredicted RBP25.76■■□□□ 1.71
SQSTM1-209ENST00000504627 CCDC9Q9Y3X0 531 aaKnown RBP25.75■■□□□ 1.71
SQSTM1-209ENST00000504627 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.74■■□□□ 1.71
SQSTM1-209ENST00000504627 FAM83GA6ND36 823 aa25.74■■□□□ 1.71
SQSTM1-209ENST00000504627 RALGAPBQ86X10 1494 aa25.72■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms