RNA–Protein interactions for RNA: ENST00000504355.5

PDLIM3-205, Transcript of PDZ and LIM domain 3, humanhuman

TSL 3

Gene PDLIM3, Length 510 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-205ENST00000504355 DCAF11Q8TEB1 546 aa23.95■■□□□ 1.42
PDLIM3-205ENST00000504355 C1orf167Q5SNV9 1468 aa23.94■■□□□ 1.42
PDLIM3-205ENST00000504355 DHX57Q6P158 1386 aaKnown RBP23.94■■□□□ 1.42
PDLIM3-205ENST00000504355 YTHDC2Q9H6S0 1430 aaKnown RBP23.93■■□□□ 1.42
PDLIM3-205ENST00000504355 NRXN1Q9ULB1 1477 aa23.93■■□□□ 1.42
PDLIM3-205ENST00000504355 TECPR2O15040 1411 aa23.93■■□□□ 1.42
PDLIM3-205ENST00000504355 RXRBP28702 533 aa23.92■■□□□ 1.42
PDLIM3-205ENST00000504355 DDX17Q92841 729 aaKnown RBP23.92■■□□□ 1.42
PDLIM3-205ENST00000504355 UPF1Q92900 1129 aaKnown RBP eCLIP23.92■■□□□ 1.42
PDLIM3-205ENST00000504355 LRRC59Q96AG4 307 aaKnown RBP23.91■■□□□ 1.42
PDLIM3-205ENST00000504355 ORAI2Q96SN7 254 aa23.91■■□□□ 1.42
PDLIM3-205ENST00000504355 LAMC1P11047 1609 aa23.91■■□□□ 1.42
PDLIM3-205ENST00000504355 NHSL1Q5SYE7 1610 aa23.91■■□□□ 1.42
PDLIM3-205ENST00000504355 KNDC1Q76NI1 1749 aa23.88■■□□□ 1.41
PDLIM3-205ENST00000504355 STAC3Q96MF2 364 aa23.88■■□□□ 1.41
PDLIM3-205ENST00000504355 PLEKHH1Q9ULM0 1364 aa23.88■■□□□ 1.41
PDLIM3-205ENST00000504355 NUTM2FA1L443 756 aa23.87■■□□□ 1.41
PDLIM3-205ENST00000504355 ESCO1Q5FWF5 840 aa23.87■■□□□ 1.41
PDLIM3-205ENST00000504355 SIRT1Q96EB6 747 aa23.87■■□□□ 1.41
PDLIM3-205ENST00000504355 CDC42BPGQ6DT37 1551 aa23.86■■□□□ 1.41
PDLIM3-205ENST00000504355 AFF2P51816 1311 aa23.86■■□□□ 1.41
PDLIM3-205ENST00000504355 CDK12Q9NYV4 1490 aaPredicted RBP23.84■■□□□ 1.41
PDLIM3-205ENST00000504355 SAFB2Q14151 953 aaKnown RBP eCLIP23.84■■□□□ 1.41
PDLIM3-205ENST00000504355 POGKQ9P215 609 aa23.84■■□□□ 1.41
PDLIM3-205ENST00000504355 PRAM1Q96QH2 718 aa23.83■■□□□ 1.41
PDLIM3-205ENST00000504355 TRAK1Q9UPV9 953 aa23.81■■□□□ 1.4
PDLIM3-205ENST00000504355 C8orf37Q96NL8 207 aa23.8■■□□□ 1.4
PDLIM3-205ENST00000504355 SOS2Q07890 1332 aaPredicted RBP23.79■■□□□ 1.4
PDLIM3-205ENST00000504355 NPHP3Q7Z494 1330 aa23.79■■□□□ 1.4
PDLIM3-205ENST00000504355 PNPLA6Q8IY17 1366 aa23.78■■□□□ 1.4
PDLIM3-205ENST00000504355 FOXO3O43524 673 aa23.77■■□□□ 1.4
PDLIM3-205ENST00000504355 DLC1Q96QB1 1528 aa23.76■■□□□ 1.39
PDLIM3-205ENST00000504355 QTRT2Q9H974 415 aaKnown RBP23.76■■□□□ 1.39
PDLIM3-205ENST00000504355 ADGRB1O14514 1584 aa23.75■■□□□ 1.39
PDLIM3-205ENST00000504355 RBM6P78332 1123 aaKnown RBP23.75■■□□□ 1.39
PDLIM3-205ENST00000504355 XPCQ01831 940 aaPredicted RBP23.74■■□□□ 1.39
PDLIM3-205ENST00000504355 FMN2Q9NZ56 1722 aa23.73■■□□□ 1.39
PDLIM3-205ENST00000504355 ADAMTS2O95450 1211 aa23.72■■□□□ 1.39
PDLIM3-205ENST00000504355 NGLY1Q96IV0 654 aa23.72■■□□□ 1.39
PDLIM3-205ENST00000504355 RGS12O14924 1447 aa23.72■■□□□ 1.39
PDLIM3-205ENST00000504355 HIRIP3Q9BW71 556 aaPredicted RBP23.71■■□□□ 1.39
PDLIM3-205ENST00000504355 MINK1Q8N4C8 1332 aaPredicted RBP23.7■■□□□ 1.38
PDLIM3-205ENST00000504355 PHF8Q9UPP1 1060 aa23.68■■□□□ 1.38
PDLIM3-205ENST00000504355 NEUROD1Q13562 356 aa23.67■■□□□ 1.38
PDLIM3-205ENST00000504355 KRT28Q7Z3Y7 464 aa23.67■■□□□ 1.38
PDLIM3-205ENST00000504355 PXDNQ92626 1479 aa23.67■■□□□ 1.38
PDLIM3-205ENST00000504355 SIN3AQ96ST3 1273 aa23.66■■□□□ 1.38
PDLIM3-205ENST00000504355 KIF1AQ12756 1690 aa23.66■■□□□ 1.38
PDLIM3-205ENST00000504355 PSME1Q06323 249 aa23.65■■□□□ 1.38
PDLIM3-205ENST00000504355 USP21Q9UK80 565 aa23.64■■□□□ 1.37
PDLIM3-205ENST00000504355 EIF3AQ14152 1382 aaKnown RBP23.64■■□□□ 1.37
PDLIM3-205ENST00000504355 TRIM26Q12899 539 aaPredicted RBP23.63■■□□□ 1.37
PDLIM3-205ENST00000504355 PMFBP1Q8TBY8 1022 aa23.63■■□□□ 1.37
PDLIM3-205ENST00000504355 ADGRB2O60241 1585 aa23.62■■□□□ 1.37
PDLIM3-205ENST00000504355 ANKARQ7Z5J8 1434 aa23.62■■□□□ 1.37
PDLIM3-205ENST00000504355 WASLO00401 505 aaPredicted RBP23.62■■□□□ 1.37
PDLIM3-205ENST00000504355 L3MBTL2Q969R5 705 aa23.62■■□□□ 1.37
PDLIM3-205ENST00000504355 TRPC5Q9UL62 973 aaPredicted RBP23.61■■□□□ 1.37
PDLIM3-205ENST00000504355 RGPD8O14715 1765 aaPredicted RBP23.6■■□□□ 1.37
PDLIM3-205ENST00000504355 NBPF1Q3BBV0 1214 aa23.6■■□□□ 1.37
PDLIM3-205ENST00000504355 SPATA31A3Q5VYP0 1347 aa23.59■■□□□ 1.37
PDLIM3-205ENST00000504355 COL22A1Q8NFW1 1626 aaPredicted RBP23.59■■□□□ 1.37
PDLIM3-205ENST00000504355 KIAA1210Q9ULL0 1709 aa23.59■■□□□ 1.37
PDLIM3-205ENST00000504355 LMOD2Q6P5Q4 547 aa23.59■■□□□ 1.37
PDLIM3-205ENST00000504355 ATAD2Q6PL18 1390 aa23.59■■□□□ 1.37
PDLIM3-205ENST00000504355 FNBP4Q8N3X1 1017 aaPredicted RBP23.58■■□□□ 1.37
PDLIM3-205ENST00000504355 ARHGEF28Q8N1W1 1705 aaKnown RBP23.58■■□□□ 1.37
PDLIM3-205ENST00000504355 HAP1P54257 671 aaPredicted RBP23.57■■□□□ 1.36
PDLIM3-205ENST00000504355 TULP4Q9NRJ4 1543 aa23.56■■□□□ 1.36
PDLIM3-205ENST00000504355 PLEKHG5O94827 1062 aa23.56■■□□□ 1.36
PDLIM3-205ENST00000504355 USP32Q8NFA0 1604 aa23.55■■□□□ 1.36
PDLIM3-205ENST00000504355 PRR36Q9H6K5 1346 aa23.55■■□□□ 1.36
PDLIM3-205ENST00000504355 MARF1Q9Y4F3 1742 aaKnown RBP23.54■■□□□ 1.36
PDLIM3-205ENST00000504355 TNS3Q68CZ2 1445 aa23.54■■□□□ 1.36
PDLIM3-205ENST00000504355 GPRASP1Q5JY77 1395 aa23.53■■□□□ 1.36
PDLIM3-205ENST00000504355 ATRNO75882 1429 aa23.53■■□□□ 1.36
PDLIM3-205ENST00000504355 NGDNQ8NEJ9 315 aaKnown RBP23.53■■□□□ 1.36
PDLIM3-205ENST00000504355 CDK19Q9BWU1 502 aa23.53■■□□□ 1.36
PDLIM3-205ENST00000504355 SBNO1A3KN83 1393 aa23.52■■□□□ 1.36
PDLIM3-205ENST00000504355 NUDT16Q96DE0 195 aaKnown RBP23.52■■□□□ 1.36
PDLIM3-205ENST00000504355 ARHGEF10O15013 1369 aa23.51■■□□□ 1.35
PDLIM3-205ENST00000504355 CENPJQ9HC77 1338 aaPredicted RBP23.5■■□□□ 1.35
PDLIM3-205ENST00000504355 CABLES1Q8TDN4 633 aa23.48■■□□□ 1.35
PDLIM3-205ENST00000504355 PAK3O75914 559 aaPredicted RBP23.47■■□□□ 1.35
PDLIM3-205ENST00000504355 ROCK2O75116 1388 aaKnown RBP23.46■■□□□ 1.35
PDLIM3-205ENST00000504355 SRPK2P78362 688 aaKnown RBP23.46■■□□□ 1.35
PDLIM3-205ENST00000504355 BCL9LQ86UU0 1499 aa23.46■■□□□ 1.35
PDLIM3-205ENST00000504355 EP400Q96L91 3159 aa23.46■■□□□ 1.35
PDLIM3-205ENST00000504355 ATP7BP35670 1465 aa23.45■■□□□ 1.34
PDLIM3-205ENST00000504355 SRCAPQ6ZRS2 3230 aa23.45■■□□□ 1.34
PDLIM3-205ENST00000504355 TONSLQ96HA7 1378 aa23.44■■□□□ 1.34
PDLIM3-205ENST00000504355 CCDC61Q9Y6R9 512 aa23.44■■□□□ 1.34
PDLIM3-205ENST00000504355 ITSN1Q15811 1721 aa23.44■■□□□ 1.34
PDLIM3-205ENST00000504355 GJD4Q96KN9 370 aaPredicted RBP23.43■■□□□ 1.34
PDLIM3-205ENST00000504355 ZRANB1Q9UGI0 708 aa23.43■■□□□ 1.34
PDLIM3-205ENST00000504355 TRPM1Q7Z4N2 1603 aa23.42■■□□□ 1.34
PDLIM3-205ENST00000504355 CCDC125Q86Z20 511 aa23.42■■□□□ 1.34
PDLIM3-205ENST00000504355 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.42■■□□□ 1.34
PDLIM3-205ENST00000504355 TRPM3Q9HCF6 1732 aaPredicted RBP23.39■■□□□ 1.34
PDLIM3-205ENST00000504355 UNC5CLQ8IV45 518 aa23.39■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms