RNA–Protein interactions for RNA: ENST00000504011.5

PDLIM3-204, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best)

Gene PDLIM3, Length 2,819 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-204ENST00000504011 SLC52A1Q9NWF4 448 aa19.98■□□□□ 0.79
PDLIM3-204ENST00000504011 QRICH2Q9H0J4 1663 aa19.98■□□□□ 0.79
PDLIM3-204ENST00000504011 BCL2L13Q9BXK5 485 aa19.98■□□□□ 0.79
PDLIM3-204ENST00000504011 NPC1L1Q9UHC9 1359 aa19.98■□□□□ 0.79
PDLIM3-204ENST00000504011 CGNL1Q0VF96 1302 aa19.98■□□□□ 0.79
PDLIM3-204ENST00000504011 PAK3O75914 559 aaPredicted RBP19.98■□□□□ 0.79
PDLIM3-204ENST00000504011 U2AF1L5P0DN76 240 aaPredicted RBP19.97■□□□□ 0.79
PDLIM3-204ENST00000504011 U2AF1Q01081 240 aaKnown RBP eCLIP19.97■□□□□ 0.79
PDLIM3-204ENST00000504011 U2SURPO15042 1029 aaKnown RBP19.96■□□□□ 0.79
PDLIM3-204ENST00000504011 RICTORQ6R327 1708 aa19.96■□□□□ 0.79
PDLIM3-204ENST00000504011 SBNO2Q9Y2G9 1366 aa19.96■□□□□ 0.79
PDLIM3-204ENST00000504011 WWC1Q8IX03 1113 aa19.96■□□□□ 0.79
PDLIM3-204ENST00000504011 TCP11L2Q8N4U5 519 aa19.96■□□□□ 0.79
PDLIM3-204ENST00000504011 FRAT1Q92837 279 aaPredicted RBP19.96■□□□□ 0.79
PDLIM3-204ENST00000504011 GLI2P10070 1586 aa19.96■□□□□ 0.79
PDLIM3-204ENST00000504011 NEURL4Q96JN8 1562 aa19.96■□□□□ 0.79
PDLIM3-204ENST00000504011 NEXMIFQ5QGS0 1516 aa19.95■□□□□ 0.78
PDLIM3-204ENST00000504011 PPM1GO15355 546 aaPredicted RBP19.95■□□□□ 0.78
PDLIM3-204ENST00000504011 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.94■□□□□ 0.78
PDLIM3-204ENST00000504011 MYO5BQ9ULV0 1848 aa19.93■□□□□ 0.78
PDLIM3-204ENST00000504011 SETBP1Q9Y6X0 1596 aa19.93■□□□□ 0.78
PDLIM3-204ENST00000504011 CANXP27824 592 aaKnown RBP19.92■□□□□ 0.78
PDLIM3-204ENST00000504011 TULP4Q9NRJ4 1543 aa19.92■□□□□ 0.78
PDLIM3-204ENST00000504011 CABP1Q9NZU7 370 aa19.92■□□□□ 0.78
PDLIM3-204ENST00000504011 PIK3C2BO00750 1634 aa19.92■□□□□ 0.78
PDLIM3-204ENST00000504011 A0A1W2PP64 1363 aa19.91■□□□□ 0.78
PDLIM3-204ENST00000504011 INSRP06213 1382 aa19.9■□□□□ 0.78
PDLIM3-204ENST00000504011 PDE4AP27815 886 aa19.9■□□□□ 0.78
PDLIM3-204ENST00000504011 CDK19Q9BWU1 502 aa19.9■□□□□ 0.78
PDLIM3-204ENST00000504011 E9PSI1 815 aa19.9■□□□□ 0.78
PDLIM3-204ENST00000504011 NBR1Q14596 966 aa19.9■□□□□ 0.78
PDLIM3-204ENST00000504011 PANK1Q8TE04 598 aa19.9■□□□□ 0.78
PDLIM3-204ENST00000504011 ANP32AP39687 249 aaKnown RBP19.89■□□□□ 0.78
PDLIM3-204ENST00000504011 RGS3P49796 1198 aa19.89■□□□□ 0.78
PDLIM3-204ENST00000504011 TNNQ9UQP3 1299 aa19.89■□□□□ 0.78
PDLIM3-204ENST00000504011 RIMBP3CA6NJZ7 1639 aa19.89■□□□□ 0.78
PDLIM3-204ENST00000504011 RIMBP3BA6NNM3 1639 aa19.89■□□□□ 0.78
PDLIM3-204ENST00000504011 RIMBP3Q9UFD9 1639 aa19.89■□□□□ 0.78
PDLIM3-204ENST00000504011 POLR3AO14802 1390 aaPredicted RBP19.89■□□□□ 0.77
PDLIM3-204ENST00000504011 RUNDC1Q96C34 613 aa19.89■□□□□ 0.77
PDLIM3-204ENST00000504011 CFAP53Q96M91 514 aa19.89■□□□□ 0.77
PDLIM3-204ENST00000504011 MYO3AQ8NEV4 1616 aa19.88■□□□□ 0.77
PDLIM3-204ENST00000504011 NCKAP5LQ9HCH0 1330 aa19.88■□□□□ 0.77
PDLIM3-204ENST00000504011 TRMT2AQ8IZ69 625 aaKnown RBP19.87■□□□□ 0.77
PDLIM3-204ENST00000504011 CLUAP1Q96AJ1 413 aa19.87■□□□□ 0.77
PDLIM3-204ENST00000504011 ESF1Q9H501 851 aaKnown RBP19.87■□□□□ 0.77
PDLIM3-204ENST00000504011 COG6Q9Y2V7 657 aa19.87■□□□□ 0.77
PDLIM3-204ENST00000504011 ANKRD36BQ8N2N9 1353 aa19.87■□□□□ 0.77
PDLIM3-204ENST00000504011 NUTM2FA1L443 756 aa19.86■□□□□ 0.77
PDLIM3-204ENST00000504011 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.86■□□□□ 0.77
PDLIM3-204ENST00000504011 FYB1O15117 783 aa19.86■□□□□ 0.77
PDLIM3-204ENST00000504011 ARHGAP31Q2M1Z3 1444 aa19.86■□□□□ 0.77
PDLIM3-204ENST00000504011 NOP58Q9Y2X3 529 aaKnown RBP19.85■□□□□ 0.77
PDLIM3-204ENST00000504011 NKTRP30414 1462 aaKnown RBP19.85■□□□□ 0.77
PDLIM3-204ENST00000504011 MYT1Q01538 1121 aa19.85■□□□□ 0.77
PDLIM3-204ENST00000504011 TXNDC2Q86VQ3 553 aa19.85■□□□□ 0.77
PDLIM3-204ENST00000504011 TSR2Q969E8 191 aaKnown RBP19.85■□□□□ 0.77
PDLIM3-204ENST00000504011 YTHDC2Q9H6S0 1430 aaKnown RBP19.85■□□□□ 0.77
PDLIM3-204ENST00000504011 ARHGEF28Q8N1W1 1705 aaKnown RBP19.85■□□□□ 0.77
PDLIM3-204ENST00000504011 TCERG1O14776 1098 aaKnown RBP19.84■□□□□ 0.77
PDLIM3-204ENST00000504011 ZC3H13Q5T200 1668 aaKnown RBP19.83■□□□□ 0.76
PDLIM3-204ENST00000504011 PREX1Q8TCU6 1659 aa19.83■□□□□ 0.76
PDLIM3-204ENST00000504011 TERF2IPQ9NYB0 399 aa19.81■□□□□ 0.76
PDLIM3-204ENST00000504011 TMEM131LA2VDJ0 1609 aa19.81■□□□□ 0.76
PDLIM3-204ENST00000504011 ZRANB1Q9UGI0 708 aa19.81■□□□□ 0.76
PDLIM3-204ENST00000504011 DIP2BQ9P265 1576 aa19.81■□□□□ 0.76
PDLIM3-204ENST00000504011 BACH2Q9BYV9 841 aa19.8■□□□□ 0.76
PDLIM3-204ENST00000504011 IPO9Q96P70 1041 aaKnown RBP19.8■□□□□ 0.76
PDLIM3-204ENST00000504011 PTPRMP28827 1452 aa19.8■□□□□ 0.76
PDLIM3-204ENST00000504011 IGHDP01880 384 aa19.79■□□□□ 0.76
PDLIM3-204ENST00000504011 HDGFL2Q7Z4V5 671 aaPredicted RBP19.79■□□□□ 0.76
PDLIM3-204ENST00000504011 ZBTB47Q9UFB7 747 aaPredicted RBP19.79■□□□□ 0.76
PDLIM3-204ENST00000504011 CEBPAP49715 358 aaPredicted RBP19.78■□□□□ 0.76
PDLIM3-204ENST00000504011 KDM2BQ8NHM5 1336 aa19.77■□□□□ 0.76
PDLIM3-204ENST00000504011 RLBP1P12271 317 aa19.77■□□□□ 0.76
PDLIM3-204ENST00000504011 CLTCQ00610 1675 aaKnown RBP19.76■□□□□ 0.75
PDLIM3-204ENST00000504011 SHPRHQ149N8 1683 aa19.76■□□□□ 0.75
PDLIM3-204ENST00000504011 HMOX1P09601 288 aa19.76■□□□□ 0.75
PDLIM3-204ENST00000504011 RARSP54136 660 aaKnown RBP19.75■□□□□ 0.75
PDLIM3-204ENST00000504011 LAS1LQ9Y4W2 734 aaKnown RBP19.75■□□□□ 0.75
PDLIM3-204ENST00000504011 ALKQ9UM73 1620 aa19.75■□□□□ 0.75
PDLIM3-204ENST00000504011 CENPQQ7L2Z9 268 aaPredicted RBP19.75■□□□□ 0.75
PDLIM3-204ENST00000504011 ABCC11Q96J66 1382 aa19.75■□□□□ 0.75
PDLIM3-204ENST00000504011 RIMS2Q9UQ26 1411 aa19.74■□□□□ 0.75
PDLIM3-204ENST00000504011 METP08581 1390 aa19.74■□□□□ 0.75
PDLIM3-204ENST00000504011 SLC4A3P48751 1232 aa19.74■□□□□ 0.75
PDLIM3-204ENST00000504011 SOX12O15370 315 aa19.73■□□□□ 0.75
PDLIM3-204ENST00000504011 NME9Q86XW9 330 aa19.73■□□□□ 0.75
PDLIM3-204ENST00000504011 MAPK8IP3Q9UPT6 1336 aa19.73■□□□□ 0.75
PDLIM3-204ENST00000504011 ATAD2Q6PL18 1390 aa19.73■□□□□ 0.75
PDLIM3-204ENST00000504011 ZFYVE9O95405 1425 aa19.73■□□□□ 0.75
PDLIM3-204ENST00000504011 ZMYM3Q14202 1370 aa19.72■□□□□ 0.75
PDLIM3-204ENST00000504011 EMILIN1Q9Y6C2 1016 aa19.72■□□□□ 0.75
PDLIM3-204ENST00000504011 A2ML1A8K2U0 1454 aa19.72■□□□□ 0.75
PDLIM3-204ENST00000504011 RIPK4P57078 832 aa19.71■□□□□ 0.75
PDLIM3-204ENST00000504011 CD163L1Q9NR16 1453 aa19.71■□□□□ 0.75
PDLIM3-204ENST00000504011 DIAPH1O60610 1272 aaKnown RBP19.71■□□□□ 0.75
PDLIM3-204ENST00000504011 TMPOP42166 694 aaKnown RBP19.71■□□□□ 0.75
PDLIM3-204ENST00000504011 EXOSC9Q06265 439 aaKnown RBP19.71■□□□□ 0.75
PDLIM3-204ENST00000504011 THUMPD2Q9BTF0 503 aaKnown RBP19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms