RNA–Protein interactions for RNA: ENST00000503547.1

NR1I3-218, Transcript of nuclear receptor subfamily 1 group I member 3, human

TSL 1 (best)

Gene NR1I3, Length 535 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1I3-218	ENST00000503547	SOS2	Q07890	1332 aa	Predicted RBP	13.39	□□□□□ -0.27
NR1I3-218	ENST00000503547	RPGRIP1L	Q68CZ1	1315 aa		13.39	□□□□□ -0.27
NR1I3-218	ENST00000503547	EP400	Q96L91	3159 aa		13.38	□□□□□ -0.27
NR1I3-218	ENST00000503547	PRAG1	Q86YV5	1406 aa		13.38	□□□□□ -0.27
NR1I3-218	ENST00000503547	ATAD2	Q6PL18	1390 aa		13.37	□□□□□ -0.27
NR1I3-218	ENST00000503547	ESCO1	Q5FWF5	840 aa		13.37	□□□□□ -0.27
NR1I3-218	ENST00000503547	TRPC5	Q9UL62	973 aa	Predicted RBP	13.37	□□□□□ -0.27
NR1I3-218	ENST00000503547	KNDC1	Q76NI1	1749 aa		13.36	□□□□□ -0.27
NR1I3-218	ENST00000503547	RGPD8	O14715	1765 aa	Predicted RBP	13.36	□□□□□ -0.27
NR1I3-218	ENST00000503547	SRCAP	Q6ZRS2	3230 aa		13.36	□□□□□ -0.27
NR1I3-218	ENST00000503547	NPHP3	Q7Z494	1330 aa		13.36	□□□□□ -0.27
NR1I3-218	ENST00000503547	CCDC144A	A2RUR9	1427 aa		13.35	□□□□□ -0.27
NR1I3-218	ENST00000503547	FMN2	Q9NZ56	1722 aa		13.34	□□□□□ -0.27
NR1I3-218	ENST00000503547	XPC	Q01831	940 aa	Predicted RBP	13.34	□□□□□ -0.27
NR1I3-218	ENST00000503547	STK26	Q9P289	416 aa		13.34	□□□□□ -0.27
NR1I3-218	ENST00000503547	PXDN	Q92626	1479 aa		13.34	□□□□□ -0.27
NR1I3-218	ENST00000503547	KIF1A	Q12756	1690 aa		13.34	□□□□□ -0.27
NR1I3-218	ENST00000503547	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	13.33	□□□□□ -0.27
NR1I3-218	ENST00000503547	NUTM2F	A1L443	756 aa		13.33	□□□□□ -0.28
NR1I3-218	ENST00000503547	MYOM2	P54296	1465 aa		13.33	□□□□□ -0.28
NR1I3-218	ENST00000503547	ATRN	O75882	1429 aa		13.32	□□□□□ -0.28
NR1I3-218	ENST00000503547	FOXO3	O43524	673 aa		13.32	□□□□□ -0.28
NR1I3-218	ENST00000503547	RGL3	Q3MIN7	710 aa		13.32	□□□□□ -0.28
NR1I3-218	ENST00000503547	ADGRF5	Q8IZF2	1346 aa		13.32	□□□□□ -0.28
NR1I3-218	ENST00000503547	LRPPRC	P42704	1394 aa	Known RBP	13.32	□□□□□ -0.28
NR1I3-218	ENST00000503547	FNBP4	Q8N3X1	1017 aa	Predicted RBP	13.31	□□□□□ -0.28
NR1I3-218	ENST00000503547	BRWD3	Q6RI45	1802 aa		13.3	□□□□□ -0.28
NR1I3-218	ENST00000503547	WAPL	Q7Z5K2	1190 aa		13.3	□□□□□ -0.28
NR1I3-218	ENST00000503547	ANKRD30B	Q9BXX2	1392 aa		13.3	□□□□□ -0.28
NR1I3-218	ENST00000503547	TECPR2	O15040	1411 aa		13.29	□□□□□ -0.28
NR1I3-218	ENST00000503547	USP32	Q8NFA0	1604 aa		13.28	□□□□□ -0.28
NR1I3-218	ENST00000503547	TMEM132E	Q6IEE7	984 aa		13.28	□□□□□ -0.28
NR1I3-218	ENST00000503547	SPATA31E1	Q6ZUB1	1445 aa		13.28	□□□□□ -0.28
NR1I3-218	ENST00000503547	BCL9L	Q86UU0	1499 aa		13.28	□□□□□ -0.28
NR1I3-218	ENST00000503547	PLCH1	Q4KWH8	1693 aa		13.28	□□□□□ -0.28
NR1I3-218	ENST00000503547	HAP1	P54257	671 aa	Predicted RBP	13.27	□□□□□ -0.29
NR1I3-218	ENST00000503547	PLEKHH1	Q9ULM0	1364 aa		13.27	□□□□□ -0.29
NR1I3-218	ENST00000503547	PIK3C2G	O75747	1445 aa		13.27	□□□□□ -0.29
NR1I3-218	ENST00000503547	ABCA3	Q99758	1704 aa		13.27	□□□□□ -0.29
NR1I3-218	ENST00000503547	YTHDC2	Q9H6S0	1430 aa	Known RBP	13.26	□□□□□ -0.29
NR1I3-218	ENST00000503547	ZRANB1	Q9UGI0	708 aa		13.26	□□□□□ -0.29
NR1I3-218	ENST00000503547	NWD2	Q9ULI1	1742 aa		13.25	□□□□□ -0.29
NR1I3-218	ENST00000503547	GLI3	P10071	1580 aa		13.25	□□□□□ -0.29
NR1I3-218	ENST00000503547	ABCC11	Q96J66	1382 aa		13.25	□□□□□ -0.29
NR1I3-218	ENST00000503547	PLEKHG5	O94827	1062 aa		13.25	□□□□□ -0.29
NR1I3-218	ENST00000503547	GJD4	Q96KN9	370 aa	Predicted RBP	13.25	□□□□□ -0.29
NR1I3-218	ENST00000503547	MPHOSPH9	Q99550	1183 aa		13.25	□□□□□ -0.29
NR1I3-218	ENST00000503547	RALGAPB	Q86X10	1494 aa		13.23	□□□□□ -0.29
NR1I3-218	ENST00000503547	SPATA31A3	Q5VYP0	1347 aa		13.23	□□□□□ -0.29
NR1I3-218	ENST00000503547	TNS3	Q68CZ2	1445 aa		13.22	□□□□□ -0.29
NR1I3-218	ENST00000503547	LMOD2	Q6P5Q4	547 aa		13.22	□□□□□ -0.29
NR1I3-218	ENST00000503547	KRT28	Q7Z3Y7	464 aa		13.22	□□□□□ -0.29
NR1I3-218	ENST00000503547	CCDC125	Q86Z20	511 aa		13.22	□□□□□ -0.29
NR1I3-218	ENST00000503547	UNC5CL	Q8IV45	518 aa		13.22	□□□□□ -0.29
NR1I3-218	ENST00000503547	CCDC9	Q9Y3X0	531 aa	Known RBP	13.22	□□□□□ -0.29
NR1I3-218	ENST00000503547	SLIT2	O94813	1529 aa		13.22	□□□□□ -0.29
NR1I3-218	ENST00000503547	SAFB2	Q14151	953 aa	Known RBP eCLIP	13.21	□□□□□ -0.29
NR1I3-218	ENST00000503547	PHF8	Q9UPP1	1060 aa		13.21	□□□□□ -0.29
NR1I3-218	ENST00000503547	DHX57	Q6P158	1386 aa	Known RBP	13.2	□□□□□ -0.3
NR1I3-218	ENST00000503547	PSME1	Q06323	249 aa		13.2	□□□□□ -0.3
NR1I3-218	ENST00000503547	CABLES1	Q8TDN4	633 aa		13.19	□□□□□ -0.3
NR1I3-218	ENST00000503547	BLM	P54132	1417 aa	Predicted RBP	13.19	□□□□□ -0.3
NR1I3-218	ENST00000503547	NRXN1	Q9ULB1	1477 aa		13.18	□□□□□ -0.3
NR1I3-218	ENST00000503547		A0A0G2JS52	829 aa		13.18	□□□□□ -0.3
NR1I3-218	ENST00000503547	MYT1	Q01538	1121 aa		13.18	□□□□□ -0.3
NR1I3-218	ENST00000503547	SF3B2	Q13435	895 aa	Known RBP	13.18	□□□□□ -0.3
NR1I3-218	ENST00000503547	CFAP70	Q5T0N1	1121 aa		13.18	□□□□□ -0.3
NR1I3-218	ENST00000503547	PRAM1	Q96QH2	718 aa		13.18	□□□□□ -0.3
NR1I3-218	ENST00000503547	POGK	Q9P215	609 aa		13.18	□□□□□ -0.3
NR1I3-218	ENST00000503547	C14orf93	Q9H972	538 aa	Known RBP	13.17	□□□□□ -0.3
NR1I3-218	ENST00000503547	ARHGEF10	O15013	1369 aa		13.17	□□□□□ -0.3
NR1I3-218	ENST00000503547	NRAP	Q86VF7	1730 aa		13.16	□□□□□ -0.3
NR1I3-218	ENST00000503547	TRPM3	Q9HCF6	1732 aa	Predicted RBP	13.16	□□□□□ -0.3
NR1I3-218	ENST00000503547	ADGRB2	O60241	1585 aa		13.16	□□□□□ -0.3
NR1I3-218	ENST00000503547	SEPT12	Q8IYM1	358 aa		13.16	□□□□□ -0.3
NR1I3-218	ENST00000503547	SIRT1	Q96EB6	747 aa		13.16	□□□□□ -0.3
NR1I3-218	ENST00000503547	SBNO1	A3KN83	1393 aa		13.16	□□□□□ -0.3
NR1I3-218	ENST00000503547	ALS2	Q96Q42	1657 aa		13.15	□□□□□ -0.3
NR1I3-218	ENST00000503547	DLC1	Q96QB1	1528 aa		13.15	□□□□□ -0.3
NR1I3-218	ENST00000503547	VPS72	Q15906	364 aa		13.15	□□□□□ -0.3
NR1I3-218	ENST00000503547	PMFBP1	Q8TBY8	1022 aa		13.15	□□□□□ -0.3
NR1I3-218	ENST00000503547	ITSN1	Q15811	1721 aa		13.15	□□□□□ -0.3
NR1I3-218	ENST00000503547	COL14A1	Q05707	1796 aa	Known RBP	13.15	□□□□□ -0.31
NR1I3-218	ENST00000503547	ACIN1	Q9UKV3	1341 aa	Known RBP	13.14	□□□□□ -0.31
NR1I3-218	ENST00000503547	ANKAR	Q7Z5J8	1434 aa		13.14	□□□□□ -0.31
NR1I3-218	ENST00000503547	DEFB132	Q7Z7B7	95 aa		13.14	□□□□□ -0.31
NR1I3-218	ENST00000503547	RGPD1	P0DJD0	1748 aa		13.13	□□□□□ -0.31
NR1I3-218	ENST00000503547	GPRASP1	Q5JY77	1395 aa		13.12	□□□□□ -0.31
NR1I3-218	ENST00000503547	KRT27	Q7Z3Y8	459 aa		13.12	□□□□□ -0.31
NR1I3-218	ENST00000503547	HIRIP3	Q9BW71	556 aa	Predicted RBP	13.12	□□□□□ -0.31
NR1I3-218	ENST00000503547	CRYBG1	Q9Y4K1	1723 aa		13.12	□□□□□ -0.31
NR1I3-218	ENST00000503547	MINK1	Q8N4C8	1332 aa	Predicted RBP	13.12	□□□□□ -0.31
NR1I3-218	ENST00000503547	EIF3A	Q14152	1382 aa	Known RBP	13.11	□□□□□ -0.31
NR1I3-218	ENST00000503547	TRAK1	Q9UPV9	953 aa		13.11	□□□□□ -0.31
NR1I3-218	ENST00000503547	TULP4	Q9NRJ4	1543 aa		13.11	□□□□□ -0.31
NR1I3-218	ENST00000503547	ADGRB1	O14514	1584 aa		13.11	□□□□□ -0.31
NR1I3-218	ENST00000503547	ARHGEF28	Q8N1W1	1705 aa	Known RBP	13.1	□□□□□ -0.31
NR1I3-218	ENST00000503547	LRP5	O75197	1615 aa		13.1	□□□□□ -0.31
NR1I3-218	ENST00000503547	FAM83G	A6ND36	823 aa		13.1	□□□□□ -0.31
NR1I3-218	ENST00000503547	FAM98C	Q17RN3	349 aa	Known RBP	13.1	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms