RNA–Protein interactions for RNA: ENST00000498614.5

COL6A1-206, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL6A1, Length 2,358 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-206ENST00000498614 NPC1L1Q9UHC9 1359 aa21.44■■□□□ 1.02
COL6A1-206ENST00000498614 NRXN1Q9ULB1 1477 aa21.43■■□□□ 1.02
COL6A1-206ENST00000498614 NUTM2DQ5VT03 806 aaPredicted RBP21.43■■□□□ 1.02
COL6A1-206ENST00000498614 CARD14Q9BXL6 1004 aa21.41■■□□□ 1.02
COL6A1-206ENST00000498614 PREX1Q8TCU6 1659 aa21.4■■□□□ 1.02
COL6A1-206ENST00000498614 CCDC146Q8IYE0 955 aa21.4■■□□□ 1.02
COL6A1-206ENST00000498614 DDRGK1Q96HY6 314 aa21.4■■□□□ 1.02
COL6A1-206ENST00000498614 SLC24A1O60721 1099 aa21.4■■□□□ 1.02
COL6A1-206ENST00000498614 MYO3AQ8NEV4 1616 aa21.4■■□□□ 1.02
COL6A1-206ENST00000498614 KDM2BQ8NHM5 1336 aa21.39■■□□□ 1.02
COL6A1-206ENST00000498614 TRAK1Q9UPV9 953 aa21.39■■□□□ 1.01
COL6A1-206ENST00000498614 DUSP27Q5VZP5 1158 aa21.38■■□□□ 1.01
COL6A1-206ENST00000498614 CENPJQ9HC77 1338 aaPredicted RBP21.38■■□□□ 1.01
COL6A1-206ENST00000498614 PPLO60437 1756 aa21.38■■□□□ 1.01
COL6A1-206ENST00000498614 ZNF521Q96K83 1311 aa21.38■■□□□ 1.01
COL6A1-206ENST00000498614 SLC52A1Q9NWF4 448 aa21.37■■□□□ 1.01
COL6A1-206ENST00000498614 GOLGA2Q08379 1002 aa21.36■■□□□ 1.01
COL6A1-206ENST00000498614 STAG3Q9UJ98 1225 aa21.36■■□□□ 1.01
COL6A1-206ENST00000498614 SETBP1Q9Y6X0 1596 aa21.36■■□□□ 1.01
COL6A1-206ENST00000498614 RTN4Q9NQC3 1192 aaKnown RBP21.36■■□□□ 1.01
COL6A1-206ENST00000498614 TMEM132EQ6IEE7 984 aa21.35■■□□□ 1.01
COL6A1-206ENST00000498614 SBNO2Q9Y2G9 1366 aa21.35■■□□□ 1.01
COL6A1-206ENST00000498614 SLC4A3P48751 1232 aa21.34■■□□□ 1.01
COL6A1-206ENST00000498614 FER1L4A9Z1Z3 1794 aa21.34■■□□□ 1.01
COL6A1-206ENST00000498614 ANO8Q9HCE9 1232 aaPredicted RBP21.33■■□□□ 1.01
COL6A1-206ENST00000498614 C14orf93Q9H972 538 aaKnown RBP21.33■■□□□ 1
COL6A1-206ENST00000498614 QRICH2Q9H0J4 1663 aa21.33■■□□□ 1
COL6A1-206ENST00000498614 APAF1O14727 1248 aa21.32■■□□□ 1
COL6A1-206ENST00000498614 CENPQQ7L2Z9 268 aaPredicted RBP21.32■■□□□ 1
COL6A1-206ENST00000498614 PIK3C2BO00750 1634 aa21.31■■□□□ 1
COL6A1-206ENST00000498614 ADGRB1O14514 1584 aa21.31■■□□□ 1
COL6A1-206ENST00000498614 SPATA31D1Q6ZQQ2 1576 aa21.3■■□□□ 1
COL6A1-206ENST00000498614 SLFN5Q08AF3 891 aa21.3■■□□□ 1
COL6A1-206ENST00000498614 NFKBIBQ15653 356 aa21.3■■□□□ 1
COL6A1-206ENST00000498614 NSD3Q9BZ95 1437 aa21.29■■□□□ 1
COL6A1-206ENST00000498614 TNRQ92752 1358 aa21.29■■□□□ 1
COL6A1-206ENST00000498614 C3P01024 1663 aa21.29■■□□□ 1
COL6A1-206ENST00000498614 SLC12A5Q9H2X9 1139 aa21.29■■□□□ 1
COL6A1-206ENST00000498614 SPINK5Q9NQ38 1064 aaPredicted RBP21.29■■□□□ 1
COL6A1-206ENST00000498614 MYO5BQ9ULV0 1848 aa21.28■■□□□ 1
COL6A1-206ENST00000498614 C8orf34Q49A92 452 aa21.28■■□□□ 1
COL6A1-206ENST00000498614 RIMS1Q86UR5 1692 aaKnown RBP21.27■■□□□ 1
COL6A1-206ENST00000498614 FAM161AQ3B820 660 aa21.27■■□□□ 1
COL6A1-206ENST00000498614 RPGRIP1LQ68CZ1 1315 aa21.27■■□□□ 1
COL6A1-206ENST00000498614 TNNT2P45379 298 aaPredicted RBP21.26■□□□□ 0.99
COL6A1-206ENST00000498614 GSE1Q14687 1217 aa21.25■□□□□ 0.99
COL6A1-206ENST00000498614 MORC1Q86VD1 984 aa21.24■□□□□ 0.99
COL6A1-206ENST00000498614 TRMT2AQ8IZ69 625 aaKnown RBP21.24■□□□□ 0.99
COL6A1-206ENST00000498614 TMEM131LA2VDJ0 1609 aa21.24■□□□□ 0.99
COL6A1-206ENST00000498614 DAXXQ9UER7 740 aaPredicted RBP21.24■□□□□ 0.99
COL6A1-206ENST00000498614 ADAMTSL3P82987 1691 aa21.23■□□□□ 0.99
COL6A1-206ENST00000498614 DMRT2Q9Y5R5 561 aa21.23■□□□□ 0.99
COL6A1-206ENST00000498614 POLR3AO14802 1390 aaPredicted RBP21.23■□□□□ 0.99
COL6A1-206ENST00000498614 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.22■□□□□ 0.99
COL6A1-206ENST00000498614 BRPF3Q9ULD4 1205 aa21.22■□□□□ 0.99
COL6A1-206ENST00000498614 NEXMIFQ5QGS0 1516 aa21.21■□□□□ 0.99
COL6A1-206ENST00000498614 NKTRP30414 1462 aaKnown RBP21.21■□□□□ 0.99
COL6A1-206ENST00000498614 RGS3P49796 1198 aa21.21■□□□□ 0.99
COL6A1-206ENST00000498614 A2ML1A8K2U0 1454 aa21.2■□□□□ 0.98
COL6A1-206ENST00000498614 VGFO15240 615 aaPredicted RBP21.19■□□□□ 0.98
COL6A1-206ENST00000498614 SHPRHQ149N8 1683 aa21.19■□□□□ 0.98
COL6A1-206ENST00000498614 E9PSI1 815 aa21.19■□□□□ 0.98
COL6A1-206ENST00000498614 ARHGEF28Q8N1W1 1705 aaKnown RBP21.19■□□□□ 0.98
COL6A1-206ENST00000498614 FRAT1Q92837 279 aaPredicted RBP21.18■□□□□ 0.98
COL6A1-206ENST00000498614 BCAR3O75815 825 aa21.18■□□□□ 0.98
COL6A1-206ENST00000498614 SAFB2Q14151 953 aaKnown RBP eCLIP21.17■□□□□ 0.98
COL6A1-206ENST00000498614 TULP4Q9NRJ4 1543 aa21.17■□□□□ 0.98
COL6A1-206ENST00000498614 EVC2Q86UK5 1308 aa21.16■□□□□ 0.98
COL6A1-206ENST00000498614 NEUROD2Q15784 382 aa21.15■□□□□ 0.98
COL6A1-206ENST00000498614 WWC1Q8IX03 1113 aa21.15■□□□□ 0.98
COL6A1-206ENST00000498614 CGNL1Q0VF96 1302 aa21.14■□□□□ 0.98
COL6A1-206ENST00000498614 CABP2Q9NPB3 220 aa21.14■□□□□ 0.97
COL6A1-206ENST00000498614 USP32Q8NFA0 1604 aa21.14■□□□□ 0.97
COL6A1-206ENST00000498614 KDM4FA0A1W2PPD8 638 aa21.14■□□□□ 0.97
COL6A1-206ENST00000498614 NGEFQ8N5V2 710 aa21.14■□□□□ 0.97
COL6A1-206ENST00000498614 RRP7AQ9Y3A4 280 aaKnown RBP21.14■□□□□ 0.97
COL6A1-206ENST00000498614 MTHFSP49914 203 aa21.13■□□□□ 0.97
COL6A1-206ENST00000498614 RIMS2Q9UQ26 1411 aa21.13■□□□□ 0.97
COL6A1-206ENST00000498614 PTPRMP28827 1452 aa21.13■□□□□ 0.97
COL6A1-206ENST00000498614 STK26Q9P289 416 aa21.12■□□□□ 0.97
COL6A1-206ENST00000498614 FRAT2O75474 233 aaPredicted RBP21.12■□□□□ 0.97
COL6A1-206ENST00000498614 LTKP29376 864 aa21.11■□□□□ 0.97
COL6A1-206ENST00000498614 PRKCSHP14314 528 aaPredicted RBP21.1■□□□□ 0.97
COL6A1-206ENST00000498614 RUNDC1Q96C34 613 aa21.1■□□□□ 0.97
COL6A1-206ENST00000498614 ANKRD36BQ8N2N9 1353 aa21.1■□□□□ 0.97
COL6A1-206ENST00000498614 NLRP1Q9C000 1473 aa21.1■□□□□ 0.97
COL6A1-206ENST00000498614 UBR1Q8IWV7 1749 aa21.1■□□□□ 0.97
COL6A1-206ENST00000498614 IGHDP01880 384 aa21.09■□□□□ 0.97
COL6A1-206ENST00000498614 TCP11L2Q8N4U5 519 aa21.09■□□□□ 0.97
COL6A1-206ENST00000498614 TMEM2Q9UHN6 1383 aa21.08■□□□□ 0.97
COL6A1-206ENST00000498614 TXNDC2Q86VQ3 553 aa21.08■□□□□ 0.96
COL6A1-206ENST00000498614 IQSEC2Q5JU85 1478 aa21.07■□□□□ 0.96
COL6A1-206ENST00000498614 CFAP53Q96M91 514 aa21.07■□□□□ 0.96
COL6A1-206ENST00000498614 PUS7Q96PZ0 661 aaKnown RBP21.07■□□□□ 0.96
COL6A1-206ENST00000498614 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.07■□□□□ 0.96
COL6A1-206ENST00000498614 ZFYVE9O95405 1425 aa21.07■□□□□ 0.96
COL6A1-206ENST00000498614 SRPK2P78362 688 aaKnown RBP21.05■□□□□ 0.96
COL6A1-206ENST00000498614 THEMISQ8N1K5 641 aaPredicted RBP21.05■□□□□ 0.96
COL6A1-206ENST00000498614 USP19O94966 1318 aa21.05■□□□□ 0.96
COL6A1-206ENST00000498614 CANXP27824 592 aaKnown RBP21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms