RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 KIAA1210Q9ULL0 1709 aa23.5■■□□□ 1.35
SF3A1-209ENST00000496189 BRINP3Q76B58 766 aa23.5■■□□□ 1.35
SF3A1-209ENST00000496189 PRAM1Q96QH2 718 aa23.5■■□□□ 1.35
SF3A1-209ENST00000496189 TONSLQ96HA7 1378 aa23.5■■□□□ 1.35
SF3A1-209ENST00000496189 C1orf167Q5SNV9 1468 aa23.49■■□□□ 1.35
SF3A1-209ENST00000496189 SAFB2Q14151 953 aaKnown RBP eCLIP23.48■■□□□ 1.35
SF3A1-209ENST00000496189 PLEKHH1Q9ULM0 1364 aa23.48■■□□□ 1.35
SF3A1-209ENST00000496189 AHDC1Q5TGY3 1603 aaPredicted RBP23.45■■□□□ 1.34
SF3A1-209ENST00000496189 DISP3Q9P2K9 1392 aa23.45■■□□□ 1.34
SF3A1-209ENST00000496189 JCADQ9P266 1359 aa23.42■■□□□ 1.34
SF3A1-209ENST00000496189 ESCO1Q5FWF5 840 aa23.42■■□□□ 1.34
SF3A1-209ENST00000496189 CLSPNQ9HAW4 1339 aa23.4■■□□□ 1.34
SF3A1-209ENST00000496189 NUTM2FA1L443 756 aa23.4■■□□□ 1.34
SF3A1-209ENST00000496189 COL16A1Q07092 1604 aaPredicted RBP23.4■■□□□ 1.34
SF3A1-209ENST00000496189 EIF3AQ14152 1382 aaKnown RBP23.4■■□□□ 1.34
SF3A1-209ENST00000496189 ORAI2Q96SN7 254 aa23.39■■□□□ 1.33
SF3A1-209ENST00000496189 MED1Q15648 1581 aaPredicted RBP23.39■■□□□ 1.33
SF3A1-209ENST00000496189 FMN2Q9NZ56 1722 aa23.39■■□□□ 1.33
SF3A1-209ENST00000496189 MINK1Q8N4C8 1332 aaPredicted RBP23.38■■□□□ 1.33
SF3A1-209ENST00000496189 NHSL1Q5SYE7 1610 aa23.38■■□□□ 1.33
SF3A1-209ENST00000496189 NBPF1Q3BBV0 1214 aa23.38■■□□□ 1.33
SF3A1-209ENST00000496189 CCER1Q8TC90 406 aaPredicted RBP23.38■■□□□ 1.33
SF3A1-209ENST00000496189 PHF23Q9BUL5 403 aaPredicted RBP23.38■■□□□ 1.33
SF3A1-209ENST00000496189 ARHGEF28Q8N1W1 1705 aaKnown RBP23.38■■□□□ 1.33
SF3A1-209ENST00000496189 LRRC59Q96AG4 307 aaKnown RBP23.37■■□□□ 1.33
SF3A1-209ENST00000496189 ROCK2O75116 1388 aaKnown RBP23.37■■□□□ 1.33
SF3A1-209ENST00000496189 NPHP3Q7Z494 1330 aa23.36■■□□□ 1.33
SF3A1-209ENST00000496189 ADGRB2O60241 1585 aa23.36■■□□□ 1.33
SF3A1-209ENST00000496189 HIRIP3Q9BW71 556 aaPredicted RBP23.36■■□□□ 1.33
SF3A1-209ENST00000496189 TRPM1Q7Z4N2 1603 aa23.34■■□□□ 1.33
SF3A1-209ENST00000496189 SPATA31A6Q5VVP1 1343 aa23.33■■□□□ 1.32
SF3A1-209ENST00000496189 KIF1AQ12756 1690 aa23.32■■□□□ 1.32
SF3A1-209ENST00000496189 ANKARQ7Z5J8 1434 aa23.32■■□□□ 1.32
SF3A1-209ENST00000496189 CENPJQ9HC77 1338 aaPredicted RBP23.32■■□□□ 1.32
SF3A1-209ENST00000496189 WASLO00401 505 aaPredicted RBP23.31■■□□□ 1.32
SF3A1-209ENST00000496189 DDX17Q92841 729 aaKnown RBP23.31■■□□□ 1.32
SF3A1-209ENST00000496189 SHPRHQ149N8 1683 aa23.3■■□□□ 1.32
SF3A1-209ENST00000496189 FOXO3O43524 673 aa23.29■■□□□ 1.32
SF3A1-209ENST00000496189 PHF8Q9UPP1 1060 aa23.29■■□□□ 1.32
SF3A1-209ENST00000496189 MEX3CQ5U5Q3 659 aaKnown RBP23.28■■□□□ 1.32
SF3A1-209ENST00000496189 SOS2Q07890 1332 aaPredicted RBP23.28■■□□□ 1.32
SF3A1-209ENST00000496189 TULP4Q9NRJ4 1543 aa23.28■■□□□ 1.32
SF3A1-209ENST00000496189 PSME1Q06323 249 aa23.26■■□□□ 1.31
SF3A1-209ENST00000496189 NBPF8Q3BBV2 869 aa23.26■■□□□ 1.31
SF3A1-209ENST00000496189 CARD11Q9BXL7 1154 aa23.26■■□□□ 1.31
SF3A1-209ENST00000496189 TIMELESSQ9UNS1 1208 aa23.26■■□□□ 1.31
SF3A1-209ENST00000496189 RALGAPBQ86X10 1494 aa23.24■■□□□ 1.31
SF3A1-209ENST00000496189 RGPD8O14715 1765 aaPredicted RBP23.23■■□□□ 1.31
SF3A1-209ENST00000496189 NUTM2BA6NNL0 878 aaPredicted RBP23.23■■□□□ 1.31
SF3A1-209ENST00000496189 NUTM2EB1AL46 878 aaPredicted RBP23.23■■□□□ 1.31
SF3A1-209ENST00000496189 NUTM2AQ8IVF1 878 aaPredicted RBP23.23■■□□□ 1.31
SF3A1-209ENST00000496189 CDK19Q9BWU1 502 aa23.23■■□□□ 1.31
SF3A1-209ENST00000496189 QRICH2Q9H0J4 1663 aa23.22■■□□□ 1.31
SF3A1-209ENST00000496189 XPCQ01831 940 aaPredicted RBP23.22■■□□□ 1.31
SF3A1-209ENST00000496189 GPRASP1Q5JY77 1395 aa23.22■■□□□ 1.31
SF3A1-209ENST00000496189 PNPLA6Q8IY17 1366 aa23.22■■□□□ 1.31
SF3A1-209ENST00000496189 ITSN1Q15811 1721 aa23.22■■□□□ 1.31
SF3A1-209ENST00000496189 SRPK2P78362 688 aaKnown RBP23.21■■□□□ 1.31
SF3A1-209ENST00000496189 KRT28Q7Z3Y7 464 aa23.21■■□□□ 1.31
SF3A1-209ENST00000496189 PMFBP1Q8TBY8 1022 aa23.21■■□□□ 1.31
SF3A1-209ENST00000496189 PXDNQ92626 1479 aa23.21■■□□□ 1.31
SF3A1-209ENST00000496189 USP32Q8NFA0 1604 aa23.2■■□□□ 1.3
SF3A1-209ENST00000496189 NUDT16Q96DE0 195 aaKnown RBP23.2■■□□□ 1.3
SF3A1-209ENST00000496189 NGDNQ8NEJ9 315 aaKnown RBP23.19■■□□□ 1.3
SF3A1-209ENST00000496189 EVC2Q86UK5 1308 aa23.18■■□□□ 1.3
SF3A1-209ENST00000496189 ATP7BP35670 1465 aa23.17■■□□□ 1.3
SF3A1-209ENST00000496189 PRR36Q9H6K5 1346 aa23.16■■□□□ 1.3
SF3A1-209ENST00000496189 CCDC61Q9Y6R9 512 aa23.15■■□□□ 1.3
SF3A1-209ENST00000496189 LRP6O75581 1613 aa23.15■■□□□ 1.3
SF3A1-209ENST00000496189 LMOD2Q6P5Q4 547 aa23.14■■□□□ 1.29
SF3A1-209ENST00000496189 SPATA31A3Q5VYP0 1347 aa23.13■■□□□ 1.29
SF3A1-209ENST00000496189 TNS3Q68CZ2 1445 aa23.13■■□□□ 1.29
SF3A1-209ENST00000496189 SBNO1A3KN83 1393 aa23.13■■□□□ 1.29
SF3A1-209ENST00000496189 ARHGEF10O15013 1369 aa23.13■■□□□ 1.29
SF3A1-209ENST00000496189 COL22A1Q8NFW1 1626 aaPredicted RBP23.12■■□□□ 1.29
SF3A1-209ENST00000496189 HAP1P54257 671 aaPredicted RBP23.12■■□□□ 1.29
SF3A1-209ENST00000496189 SLC24A1O60721 1099 aa23.1■■□□□ 1.29
SF3A1-209ENST00000496189 ZNF772Q68DY9 489 aaPredicted RBP23.1■■□□□ 1.29
SF3A1-209ENST00000496189 CABP2Q9NPB3 220 aa23.1■■□□□ 1.29
SF3A1-209ENST00000496189 PAK3O75914 559 aaPredicted RBP23.09■■□□□ 1.29
SF3A1-209ENST00000496189 C8orf37Q96NL8 207 aa23.09■■□□□ 1.29
SF3A1-209ENST00000496189 SBNO2Q9Y2G9 1366 aa23.09■■□□□ 1.29
SF3A1-209ENST00000496189 TOPAZ1Q8N9V7 1692 aa23.09■■□□□ 1.29
SF3A1-209ENST00000496189 PPIP5K1Q6PFW1 1433 aa23.08■■□□□ 1.29
SF3A1-209ENST00000496189 ADAMTS2O95450 1211 aa23.08■■□□□ 1.29
SF3A1-209ENST00000496189 PLEKHG3A1L390 1219 aa23.07■■□□□ 1.28
SF3A1-209ENST00000496189 NGLY1Q96IV0 654 aa23.06■■□□□ 1.28
SF3A1-209ENST00000496189 ACEP12821 1306 aa23.06■■□□□ 1.28
SF3A1-209ENST00000496189 ATAD2Q6PL18 1390 aa23.05■■□□□ 1.28
SF3A1-209ENST00000496189 ILDR2Q71H61 639 aa23.05■■□□□ 1.28
SF3A1-209ENST00000496189 POLR3AO14802 1390 aaPredicted RBP23.04■■□□□ 1.28
SF3A1-209ENST00000496189 AFF2P51816 1311 aa23.04■■□□□ 1.28
SF3A1-209ENST00000496189 RGS17Q9UGC6 210 aaPredicted RBP23.03■■□□□ 1.28
SF3A1-209ENST00000496189 PLEKHG5O94827 1062 aa23.02■■□□□ 1.28
SF3A1-209ENST00000496189 TRPM3Q9HCF6 1732 aaPredicted RBP23.02■■□□□ 1.28
SF3A1-209ENST00000496189 CABP1Q9NZU7 370 aa23.01■■□□□ 1.27
SF3A1-209ENST00000496189 ST20-MTHFSA0A0A6YYL1 179 aa23■■□□□ 1.27
SF3A1-209ENST00000496189 BRD4O60885 1362 aaPredicted RBP23■■□□□ 1.27
SF3A1-209ENST00000496189 USP47Q96K76 1375 aa23■■□□□ 1.27
SF3A1-209ENST00000496189 POTEAQ6S8J7 498 aa22.98■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms